Geisha

home

contact

A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

Quick Search

Data Class

Enter Text:

Gene Family QuickSearch

	Transcription Factors
	Growth Factors
	Receptors
	MicroRNAs

Human Disease Gene Search

	Downloads
	Protocols
	About GEISHA
	Contact Us

	Transgenic Birds
	Model Organism Databases
	Gene Expression Databases
	Genomic Resources
	Anatomical Atlases
	Chicken Stage Series

SEMA3E
semaphorin 3E

The human orthologue of this gene is associated
with the following human disease:

CHARGE syndrome

Gene

Official Symbol	SEMA3E
Official Full Name	semaphorin 3E
CGNC ID	6454
also known as	semaphorin-3E, semaphorin-3E\|COLL-5\|collapsin-5\|sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_204242
Polypeptide	NP_989573
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.136

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	9723	ENSG00000170381	MIM:214800	MIM:608166
Mouse	20349	ENSMUSG00000063531	All phenotypic alleles (5):Targeted, knock-out(1) Targeted, other(3) Gene trapped(1)	MGI:1340034
Xenopus	100494277			922951
Zebrafish	565658	ENSDARG00000036571	ZDB-GENE-030131-7864	ZFIN:ZDB-GENE-030131-7864

Gene Ontology

Molecular Function	receptor activity
Biological Process	angiogenesis, cell differentiation, nervous system development
Cellular Component	extracellular region, membrane

Links to other databases

Entrez Gene	374089
Ensembl Gene
KEGG	gga:374089

GEISHA Id	Sema3E.Riley.2010	Data Source	Publication
Complete cDNA Template Probe	show GTGAAGAGAGCAAGATTTTTCATGTTGGGCAGGATGGCATCTGCCCAGGACCTTTTAATTCTGGCACTATGTGGCTTGT TACTAGAGTTACCGGCTGGATATCACGCAACAGATACGAGACAGCCAAGGTTACGTCTGTCACATAAAGAGCTCTGGGA TTTAAACAGGACGTCAGTCTTTCATAGCCCATTTGGGTATCTTGGTCTTCATATAATGCTCCTGGATGAATATCAAGAG CGACTGTTCGTGGGAGGAAGAGACCTCTTGTACTCCCTCAGTTTGGATCGAATCAGCAACAACTATCGAGAGATCCATT GGCCTAGTACACCTCTTCAAGCAGAAGAATGCATAATTAAAGGAAGAGATGCTGATGAATGTGCTAATTATGTCCGTGT CCTTCACCGATACAATAGAACGCATCTTCTGGCTTGTGGAACAGGAGCTTTTGATCCAGTTTGTACGTTTATAAGAGTT GGACATCCATCAGAGGATCATCTGTTTCAACTGGAATCGCACAAATTTGAGAGAGGACGAGGCAGGTGCCCTTTTGACC CTACTTCTTCCTTCACTTCCATCTTAATTGGTGGTGAACTTTTTACTGGTCTCTACAGTGACTACTGGGGAAGAGATGC TGCTGTCTTTCGCACCATGAATCGTATGGCACATCTCCGAACTGAACCTGATAGTGAGCACCTGCTGAAAGAACCGAAG TTTGTTGGTTCATACATGATTCCTGACAATGAAGACCATGACGATAACAAAGTGTATCTCTTTTTTACTGAAAAAGCAT TAGAGGCTGAGACAAGCACTCATGCCATTTACACCAGAGTGGGACGCGTGTGTGTGAATGATATGGGAGGACAGCGGAT CGTTGTGAATAAATGGAGCACTTTCCTCAAAACCAGACTAGTTTGTTCTGTGCCTGGGAGAAATGGAATTGATACGCAT TTTGATGAATTAGAGGATGTGTTTTTGCTGCAAACTCGTGATAACAAAAATCCAGTGATATTTGGCCTCTTCAGCACTA CAAGCAATATATTTAGAGGATATGCTATATGTGTTTACCATATGGCAATCGTCCGAGCAGCTTTCAATGGACCATATGC TCATAAAGAAGGACCAGAATACTACTGGGCTCTGTACGAAGGGAAAGTACCTTATCCTAGGCCTGGTTCATGTGCCAGC AAAGTGAATGGCGGTCTGTACACTACCACCAAAGACTACCCTGATGAAGCTGTCCATTTTGCCAGGAGTCATCCACTAA TGTATCAGCCCATCAAGCCTGTTCATAAAAGACCAATTCTAGTAAAAACAGATGGGAAGTACAACCTTAAGCAAATAGC TGTGGACAGAGTGGAAGCTGAAGACGGGCAATATGATGTGTTGTTCATTGGCACAGATAATGGAATTGTGCTGAAAGTC ATTACAATTTACAATCAAGAGACAGAATCAATGGAAGAAGTGATTCTTGAAGAGCTGCAAGTATTCAAGGTGCCAATTC CTATTCTTTCCATGGAAATCTCTTCAAAAAGGCAACAGCTCTACATTGGAACTGAGTCAGTCATAGCACAAGTGAAGTT TCACCAGTGTGACATGTATGGCACAGCCTGTGCTGACTGCTGCCTGGCTCGAGATCCCTACTGTGCTTGGGATGGCATC TCCTGCTCCCGGTACTACCCCACAGGAATGCAGGCAAAGAGACGCTTCCGCAGACAAGATGTACGACATGGAAATGCAG CTCAGCAGTGCTTTGGCCAGCAGTTCATTGGAGAAGTCCTGGAGAAGACTGAGGAGCGATTGGTTTATGGAATAGAGTA CAATAGCACCCTTCTGGAGTACACCCCTCGGACCTTACAGGCAAAAGTAAACTGGTTTGTACAGCGAGCCCATGAAACT AAGAAGGAAGAGGTGAAGACAGATGAAAGAATAATCAAAATGGACCTCGGCCTCTTATTTCTGAAGCTGCATCGGCTGG ATGCAGGGACTTATTTTTGTCAGACAGTGGAACACAGCATAGTTCACACTGTTAGAAAAATCACCCTGGAAATAGTTGA GGAAGAACGTGTAGATGAAATGTTCAGTAAAGACTATGAGGAGGAGATATCTCACAAAATGCCATGCCCAATGCAGAGC AACATACCTCAGGTATCAAAACCATGGTACAAAGAATTTCTTCAACTGATAGGTTACAGCAACTTCCAGAGAGTGGAGG AGTACTGTGAAAAAGTCTGGTGTACAGATAAGAAGAGAAAAAAGCTGAAAATGTCTCCATCCAAGTGGAAATATGCCAA TCCTCAGGAGAAGAGGCAGGATCAGGAGAAGAAGGCAAGGATCAGGCCAGAGCACTACCGGTTGCCGAGGAACATAGCT GACTCTTGATGGACAAAATCCATCTGCTGTTTCTGGGCAAAATTTTACTTGGACTTCAGTAAGAGGGAAAAATCAGATT GGTTTTGGTAAATGAAACAGGTTTATATGTATAACATTTCAGGACTGAAAACAAATACCCTATGGTAAGTTATCTGTAC ACTCATGACTGTTTAGAAGCATTTTACACAAAATCCTACCTGTTTCTAAGTAGGTCAATACATCAGAGTTTGCTTTGGG AGGACATG
Citation	Riley KL, Gledhill S, Schubert FR. Early expression of axon guidance molecules in the embryonic chick mesencephalon and pretectum. Int J Dev Biol. 2010;54(4):743-53.
Comments	Not expressed in the midbrain, in contrast to other semaphorins.

no images