GEISHA - A Chicken Embryo Gene Expression Database
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SHOX
short stature homeobox

Gene
Official SymbolSHOX
Official Full Nameshort stature homeobox
CGNC ID50824
also known asshort stature homeobox protein
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_001079724
PolypeptideNP_001073192
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.56387
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human
Mouse
Xenopus
Zebrafish
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene418669
Ensembl Gene
KEGGgga:418669

Entry 1

GEISHA IdChEST927p1Data SourceGEISHA ISH Analysis
Forward cDNA Template Probeshow
GGGATCCAGCGCGGCCGAGGCCGGGGGATCCGTGTGGATAGCAGCGCGGGCAGCCATGGAAGAACTCACGGCTTTTGTA
TCCAAATCTTTCGACCAGAAAAGCAAAGAGAGCGGCGGCGGCGGCGGCGGCGGCAACAAGAAGGAGACCATCACGTACC
GGGAAGTTTTGGAGAGTGGGTTGGCTCGCTCCAGGGAGCTTGGGAACTCCGATTCGGCGCTGCCGGACATGACCGAGGG
CAGCAATCATTGCCCCGTGCACCTTTTCAAGGACCACGTAGAAAGCGACAAGGACAAGCTGAAGGAGTTCGCGGCGGGC
AGGACGGCGGAAGGGATCTACGAGTGCAAGGAGAAGCGGGAGGACGTGAAGTCGGAGGACGAGGACGGCCAGACCAAGC
TGAAACAAAGGAGAAGCAGAACCAATTTCACACTAGAGCAGCTGAACGAGCTGGAAAGACTTTTTGATGAGACTCACTA
CCCGGATGCCTTCATGCGGGAGGAACTAAGCCAGAGGCTGGGACTGTCTGAAGCTAGGGTGCAGGTAAGAGAAAGGCTC
TATGTCTGGAAGCGTCACTGCTCGCTGCCGGCGTATCCCAGCGCGGTGCCTCCTCCGTCCCGAGCGGGAGGCGGAGGAG
ACGAGTGCGGTACCGTCCTGACACCCTGCCCTGTCCGAGGGCAGCTACTCGCTCCTTGCGTTGCCTAGGAACGCGATTT
AATTATTTTTTTTAAATTATTATTATTATTATTGACTGGGGGAGTGGTGGTGACGATGTGTCTGTAACTGTGCGATCGG
CTTTATTATTATTATTGAATTTATCATCCTACTTTCCCTTGCATAAAAAAAAATTCAA
CommentsNo specific expression detected stages 6-18.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-21
stage 21
Eye
Leg
Pharyngeal Arches and Clefts
Wing
 

Entry 2

GEISHA IdShox2.Tiecke.2006Data SourcePublication
Complete cDNA Template Probeshow
CGAAGCCTCTGTGTNTTNCATGAACCTACTTAATGGGGTCCAANCTGGNTAAGTAAACNACCGGTGCGCGCCTCGATGT
TCAGTCAGTGTCCGACTAAAGCCAGAGATCAAGCTGAACAGGCAACGAATAGCACGAGACGACGATTCACTGACACTAC
GACTGAAGCTCGACAACATACCGACGCTCATGCGGAGACTGACAGTGGCTTGTCGAACGGTGCGTGGTCAAACAAGCAA
TTCGAGCAGAACACTGCAAGGATGCTCATCGGGCGCAGCAGTTCGAAGCTGCCGGGTGGCCCCTTACGTCAACGTGGGA
AGCGCTGCGGATGCCCTTCCAGCAGGTTCAGGCGCAGCTACAGCTGGACAGCGCCGTGGCCCACGCGCACCACCACCTC
CACCCGCACCTGGCCCACGCGCCCTACATGATGTTCCCCGCTCCGCCCTTCGGGCTCCCGCTCGCCACTTTGGCCGAAT
CCGCCTCCGCCGCCTCCGTGGTGGCCGCCGCCGCCGCCGCTAAGACCACCAGCAAGAACTCGAGCATCGCCGACCTGCG
GCTGAAGGCCAAGAAGCACGCGGCGCCTGGGGCTGTGACCGCCGCAGCGCTGCGCGGTCC
CitationTiecke E, Bangs F, Blaschke R, Farrell ER, Rappold G, Tickle C. Expression of the short stature homeobox gene Shox is restricted by proximal and distal signals in chick limb buds and affects the length of skeletal elements. Dev Biol. 2006 Oct 15;298(2):585-96. Epub 2006 Jul 12.
CopyrightReprinted from Developmental Biology, 298, Eva Tiecke, Fiona Bangs, Rudiger Blaschke, Elizabeth R. Farrell, Gudrun Rappold, and Cheryll Tickie, Expression of the short stature homebox gene Shox is restricted by proximal and distal signals in chick limb buds and affects the length of skeletal elements, 585-596, 2006, with permission from Elsevier. Copyright © 2006 Elsevier B.V. All rights reserved.
CommentsAuthors said: "Shox2 (EST 603126448F1 from ARK-Genomics) which is listed in NCBI as Acc# BU111844.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 19
stage 21
stage 23
stage 23
stage 23
stage 23
Atria
Limb Buds
Sinus Venosus
Spinal Cord
Spinal Ganglia and Nerves
Valves
Wing Mesenchyme
dorsal root ganglia
25-30
stage 25
stage 27
stage 30
Atria
Leg Mesenchyme
Limb Buds
Sinus Venosus
Wing Mesenchyme
 
31-35
stage 35
Wing
Wing Mesenchyme
 

Entry 3

GEISHA IdSHOX.Decker.2011Data SourcePublication
Complete cDNA Template Probeshow
GAGCTTGGGAACTCCGATTCGGCGCTGCCGGACATGACCGAGGGCAGCAATCATTGCCCCGTGCACCTTTTCAAGGACC
ACGTAGAAAGCGACAAGGACAAGCTGAAGGAGTTCGCGGCGGGCAGGACGGCGGAAGGGATCTACGAGTGCAAGGAGAA
GCGGGAGGACGTGAAGTCGGAGGACGAGGACGGCCAGACCAAGCTGAAACAAAGGAGAAGCAGAACCAATTTCACACTA
GAGCAGCTGAACGAGCTGGAAAGACTTTTTGATGAGACTCACTACCCGGATGCCTTCATGCGGGAGGAACTAAGCCAGA
GGCTGGGACTGTCTGAA
CitationDecker E, Durand C, Bender S, Rödelsperger C, Glaser A, Hecht J, Schneider KU, Rappold G. FGFR3 is a target of the homeobox transcription factor SHOX in limb development. Hum Mol Genet. 2011 Apr 15;20(8):1524-35.
CommentsThe cDNA template used to generate the probe was obtained by PCR as described.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 21
stage 21
Pharyngeal Arches and Clefts
Wing
 
25-30
stage 26
stage 28
stage 28
stage 28
stage 30
Leg Bones
Limb Buds
 

Entry 4

GEISHA IdSHOX.Durand.2012Data SourceGEISHA ISH Analysis
Complete cDNA Template Probeshow
GAGCTTGGGAACTCCGATTCGGCGCTGCCGGACATGACCGAGGGCAGCAATCATTGCCCCGTGCACCTTTTCAAGGACC
ACGTAGAAAGCGACAAGGACAAGCTGAAGGAGTTCGCGGCGGGCAGGACGGCGGAAGGGATCTACGAGTGCAAGGAGAA
GCGGGAGGACGTGAAGTCGGAGGACGAGGACGGCCAGACCAAGCTGAAACAAAGGAGAAGCAGAACCAATTTCACACTA
GAGCAGCTGAACGAGCTGGAAAGACTTTTTGATGAGACTCACTACCCGGATGCCTTCATGCGGGAGGAACTAAGCCAGA
GGCTGGGACTGTCTGAA
CommentsThe sequence below was obtained from NCBI (acc # NM_001079724.1) using the information provided in the publication as described in Durand et al. 2012.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 18
stage 18
Pharyngeal Arches and Clefts
 
19-24
stage 19
stage 19
stage 23
Limb Buds
Pharyngeal Arches and Clefts
 
25-30
stage 26
stage 29
Wing
 
31
stage 31
Wing
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.56387

Mouse

Emage
Eurexpress
MGI GXD

Frog

Xenbase

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFIN
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