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 | SIM1 SIM bHLH transcription factor 1 | The human orthologue of this gene is associated with the following human disease: |
| Gene | | Official Symbol | SIM1 | | Official Full Name | SIM bHLH transcription factor 1 | | CGNC ID | 49663 | | also known as | single-minded homolog 1|single-minded family bHLH transcription factor 1, SIM1 , single-minded homolog 1 | | gene type | protein-coding |
| | Genomic Map | | | Sequence Information | | | Gene Expression | | | Orthology | | | Gene Ontology | | Molecular Function | | | Biological Process | | | Cellular Component | |
| | Links to other databases | |
Entry 1| GEISHA Id | SIM1.UApcr | Data Source | GEISHA ISH Analysis | | Forward cDNA Template Primer | GCGGGGGCTACAAGGTCATCC | | Reverse cDNA Template Primer | AATTAACCCTCACTAAAGGGGGAGAGGCTGTGTCGGTGAGG | cDNA Template Length | 719 | | Forward cDNA Template Probe | show NCCCGGAGAGGCGGAGGGCTCACCCCCTGGCTCTCAGGTCAGATTCAGATCTCTCAGTGTGAAATCCGGAACACTGTGG GTATGGTGATGTCCTTGATTTTGACTTTGTGCTCGAGAGGCGAGATTTGCTTCCCTTTCTATTATCCGTTATGGTCGGA GTTGAATTTGCGTATGAGAATGCCGGCTTGGTAGCTGTGACCTGATCCAAGGAGAGCTGTAGTCCTTTATATTCAGTAT CCGTAAGGACGTAGTTAACGCTGACGATGCAGTGCGGGCGTGACGAGCGGCTGTTGTGCACGATGGTGGCATAGCTCTG CACCCACACCCAGCCGCCGTGCTTGGCCAGGAAGCGGTAGTACTTGGTGGTCACCTGGCCCTTCACCAGCAACAAGTGA TGCGCGCATCGCAGGTGGAAGGTGTCACAGCCGTGTACGTGATGGTAAAGGGTCTTCTCGATCAGGTCCTGGGGCTCGT ACCCGGTGAGCTCGGCCACCCTGGAGTCTAGGAAGATGAGCTTCATGTCCAGGCTAGCCCGGAACATGAACATGTTGCT GTGCAGCTTGATCTCTGTCACTGCGCTGGGAGGCAACGAGTGGCCCACGGCGACCAAACCGACGTTTTGGTAGCAGCCG TCGAAAGGGGACATGTCCAGGCTGTACTGGCGGATCTTCAGGTAGCCGCTGCAGTGGATGACCTTGTAGCCCCCGCAAA A |
Entry 2| GEISHA Id | Sim1.Ahmed.2006 | Data Source | Publication | | Complete cDNA Template Probe | show ATGAAAGAGAAGTCCAAAAATGCTGCCCGGACTAGGCGGGAGAAAGAAAACAGCGAGTTTTATGAACTGGCTAAATTAC TGCCCCTGCCCTCGGCCATCACCTCCCAGCTGGACAAAGCATCCATAATCAGGCTCACCACCAGCTACCTCAAGATGCG GGTGGTTTTCCCAGAAGGACTGGGAGAAGCCTGGGGCCACTCCAGCCGCACCAGCCCGCTGGATAACGTCGGACGGGAG CTGGGATCGCATCTTTTGCAGACGCTGGACGGTTTCATATTCGTGGTGGCTCCGGATGGGAAGATCATGTACATCTCGG AGACCGCCTCGGTGCACCTGGGCCTGTCTCAGGTAGAGCTGACCGGCAACAGCATTTACGAGTACATCCACCCCGCCGA CCACGACGAGATGACGGCGGTGCTTACAGCCCACCAGCCCTACCACTCCCACTTCGTGCAGGAGTATGAGATCGAGCGG TCCTTTTTCCTGCGGATGAAATGCGTACTGGCCAAGAGGAACGCGGGGCTGACCTGCGGGGGCTACAAGGTCATCCACT GCAGCGGCTACCTGAAGATCCGCCAGTACAGCCTGGACATGTCCCCTTTCGACGGCTGCTACCAAAACGTCGGTTTGGT CGCCGTGGGCCACTCGTTGCCTCCCAGCGCAGTGACAGAGATCAAGCTGCACAGCAACATGTTCATGTTCCGGGCTAGC CTGGACATGAAGCTCATCTTCCTAGACTCCAGGGTGGCCGAGCTCACCGGGTACGAGCCCCAGGACCTGATCGAGAAGA CCCTTTACCATCACGTACACGGCTGTGACACCTTCCACCTGCGATGCGCGCATCACTTGTTGCTGGTGAAGGGCCAGGT GACCACCAAGTACTACCGCTTCCTGGCCAAGCACGGCGGCTGGGTGTGGGTGCAGAGCTATGCCACCATCGTGCACAAC AGCCGCTCGTCACGCCCGCACTGCATCGTCAGCGTTAACTACGTCCTTACGGATACTGAATATAAAGGACTACAGCTCT CCTTGGATCAGGTCACAGCTACCAAGCCGGCATTCTCATACGCAAATTCAACTCCGACCATAACGGATAATAGAAAGGG AAGCAAATCTCGCCTCTCGAGCACAAAGTCAAAATCAAGGACATCACCATACCCACAGTATTCCGGATTTCACACTGAG AGATCTGAATCTGACCATGAGAGCCAGTGGGGTGGGAGCCCCCTCACCGACACAGCCTCTCCCCAGCTGTTGGAGCCCA CAGACAGGCCGAGCTCCCAGCATCACGATGTCTCCTGTGCCTACAGACAGTACTCGGACCGCAGTGCTCTCTGCTATGG TTTTGCACTAGACCACTCCAGGCTGGGCGATGACAGACATTTCCATACTCAGGCCTGTGAGGGAGGCAGATGTGAAGCT GGCAGATATTTCCTTGGCACACCACAGCCGGGGAGGGAAGGCTGGTGGGGCTCCCGATCAGCCTTGCCCCTGACTAAGT CATCCCCTGAAAGCAGAGAGGCGTATGAAAACAGTATGCCCCACATAACTTCAGTGCACAGGATTCACGGGAGAGGACA CTGGGATGAGGACAGTGTTGTTAGCTCTCCTGATCCTGGCTCTGCCAGTGAATCTGGTGACCGATACCGTGCTGAACAG TATCAGAGCAGCCCACATGAGCCCAGCAAAATTGAAACTCTAATAAGAGCCACCCAGCAAATGATCAAAGAGGAAGAAA ACAGGCTACAGCTACGGAAAACAACCCCTGATCCACTGATCTCCATTAATGGCACAGGGAAGAAACACACAATTTGTTT TGCAAACTACCCCCAGCAACAGTTGGCAGGGGATATCTGCCGCGTTCCGACGGTTGCCAACACTCCTCCTTGTGAACAC ATCCAGCAACGGGATGGAAAAATTATGAGCCCTCATGAAAATGACTATGACAACAGTCCCACAACATTGTCTAGGATAA GCAGTCCCAATTCTGACCGAATATCAAAATCTAGCTTGGTACTAGCTAAAGACTACCTGAATACAGACATGTCCCCTCA TCAAACTCCAGGTGATCATCCAGCAGCTTCTCCAAATTATTACAACTCCCACAGGCAGTACTTTGATAAGCATGCTTAC ACGCTAACTGGGTATGCCCTGGAGCATCTATACGACACTGAAGCCATTAGAAACTATTCACTAGGCTGCAATGGATCAC ACTTTGATGTGACTTCTCACTTAAGGATGCAGCAAGATCCAGCACAAGGACACAAAGGGACATCCGTTATAATAACCAA TGGAAGCTGA | | Citation | Ahmed MU, Cheng L, Dietrich S. Establishment of the epaxial-hypaxial boundary in the avian myotome. Dev Dyn. 2006 Jul;235(7):1884-94. | | Copyright | Copyright © 2006 Wiley-Liss, Inc. | | Comments | Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (XM_419817). |
| Stage | Image (click image to view full size) | Location (click to highlight) | Comments (click to highlight) | | 19-24 |  | | stage 22 |  | | stage 22 |  | | stage 24 | | Dermatome Myotome
| | 25 |  | | stage 25 | | Dermatome Myotome
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Entry 3| GEISHA Id | Sim1.Bothe.2007 | Data Source | Publication | | Complete cDNA Template Probe | show ATGAAAGAGAAGTCCAAAAATGCTGCCCGGACTAGGCGGGAGAAAGAAAACAGCGAGTTTTATGAACTGGCTAAATTAC TGCCCCTGCCCTCGGCCATCACCTCCCAGCTGGACAAAGCATCCATAATCAGGCTCACCACCAGCTACCTCAAGATGCG GGTGGTTTTCCCAGAAGGACTGGGAGAAGCCTGGGGCCACTCCAGCCGCACCAGCCCGCTGGATAACGTCGGACGGGAG CTGGGATCGCATCTTTTGCAGACGCTGGACGGTTTCATATTCGTGGTGGCTCCGGATGGGAAGATCATGTACATCTCGG AGACCGCCTCGGTGCACCTGGGCCTGTCTCAGGTAGAGCTGACCGGCAACAGCATTTACGAGTACATCCACCCCGCCGA CCACGACGAGATGACGGCGGTGCTTACAGCCCACCAGCCCTACCACTCCCACTTCGTGCAGGAGTATGAGATCGAGCGG TCCTTTTTCCTGCGGATGAAATGCGTACTGGCCAAGAGGAACGCGGGGCTGACCTGCGGGGGCTACAAGGTCATCCACT GCAGCGGCTACCTGAAGATCCGCCAGTACAGCCTGGACATGTCCCCTTTCGACGGCTGCTACCAAAACGTCGGTTTGGT CGCCGTGGGCCACTCGTTGCCTCCCAGCGCAGTGACAGAGATCAAGCTGCACAGCAACATGTTCATGTTCCGGGCTAGC CTGGACATGAAGCTCATCTTCCTAGACTCCAGGGTGGCCGAGCTCACCGGGTACGAGCCCCAGGACCTGATCGAGAAGA CCCTTTACCATCACGTACACGGCTGTGACACCTTCCACCTGCGATGCGCGCATCACTTGTTGCTGGTGAAGGGCCAGGT GACCACCAAGTACTACCGCTTCCTGGCCAAGCACGGCGGCTGGGTGTGGGTGCAGAGCTATGCCACCATCGTGCACAAC AGCCGCTCGTCACGCCCGCACTGCATCGTCAGCGTTAACTACGTCCTTACGGATACTGAATATAAAGGACTACAGCTCT CCTTGGATCAGGTCACAGCTACCAAGCCGGCATTCTCATACGCAAATTCAACTCCGACCATAACGGATAATAGAAAGGG AAGCAAATCTCGCCTCTCGAGCACAAAGTCAAAATCAAGGACATCACCATACCCACAGTATTCCGGATTTCACACTGAG AGATCTGAATCTGACCATGAGAGCCAGTGGGGTGGGAGCCCCCTCACCGACACAGCCTCTCCCCAGCTGTTGGAGCCCA CAGACAGGCCGAGCTCCCAGCATCACGATGTCTCCTGTGCCTACAGACAGTACTCGGACCGCAGTGCTCTCTGCTATGG TTTTGCACTAGACCACTCCAGGCTGGGCGATGACAGACATTTCCATACTCAGGCCTGTGAGGGAGGCAGATGTGAAGCT GGCAGATATTTCCTTGGCACACCACAGCCGGGGAGGGAAGGCTGGTGGGGCTCCCGATCAGCCTTGCCCCTGACTAAGT CATCCCCTGAAAGCAGAGAGGCGTATGAAAACAGTATGCCCCACATAACTTCAGTGCACAGGATTCACGGGAGAGGACA CTGGGATGAGGACAGTGTTGTTAGCTCTCCTGATCCTGGCTCTGCCAGTGAATCTGGTGACCGATACCGTGCTGAACAG TATCAGAGCAGCCCACATGAGCCCAGCAAAATTGAAACTCTAATAAGAGCCACCCAGCAAATGATCAAAGAGGAAGAAA ACAGGCTACAGCTACGGAAAACAACCCCTGATCCACTGATCTCCATTAATGGCACAGGGAAGAAACACACAATTTGTTT TGCAAACTACCCCCAGCAACAGTTGGCAGGGGATATCTGCCGCGTTCCGACGGTTGCCAACACTCCTCCTTGTGAACAC ATCCAGCAACGGGATGGAAAAATTATGAGCCCTCATGAAAATGACTATGACAACAGTCCCACAACATTGTCTAGGATAA GCAGTCCCAATTCTGACCGAATATCAAAATCTAGCTTGGTACTAGCTAAAGACTACCTGAATACAGACATGTCCCCTCA TCAAACTCCAGGTGATCATCCAGCAGCTTCTCCAAATTATTACAACTCCCACAGGCAGTACTTTGATAAGCATGCTTAC ACGCTAACTGGGTATGCCCTGGAGCATCTATACGACACTGAAGCCATTAGAAACTATTCACTAGGCTGCAATGGATCAC ACTTTGATGTGACTTCTCACTTAAGGATGCAGCAAGATCCAGCACAAGGACACAAAGGGACATCCGTTATAATAACCAA TGGAAGCTGA | | Citation | Bothe I, Ahmed MU, Winterbottom FL, von Scheven G, Dietrich S. Extrinsic versus intrinsic cues in avian paraxial mesoderm patterning and differentiation. Dev Dyn. 2007 Sep;236(9):2397-409. | | Copyright | Copyright © 2007 Wiley-Liss, Inc. | | Comments | Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (XM_419817). |
| Stage | Image (click image to view full size) | Location (click to highlight) | Comments (click to highlight) | | 13-18 |  | | stage 15 | | Sclerotome Somites
| | 19-24 |  | | stage 24 |  | | stage 24 | | Somites
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Entry 4| GEISHA Id | Sim1.Cheng.2004 | Data Source | Publication | | Complete cDNA Template Probe | show ATGAAAGAGAAGTCCAAAAATGCTGCCCGGACTAGGCGGGAGAAAGAAAACAGCGAGTTTTATGAACTGGCTAAATTAC TGCCCCTGCCCTCGGCCATCACCTCCCAGCTGGACAAAGCATCCATAATCAGGCTCACCACCAGCTACCTCAAGATGCG GGTGGTTTTCCCAGAAGGACTGGGAGAAGCCTGGGGCCACTCCAGCCGCACCAGCCCGCTGGATAACGTCGGACGGGAG CTGGGATCGCATCTTTTGCAGACGCTGGACGGTTTCATATTCGTGGTGGCTCCGGATGGGAAGATCATGTACATCTCGG AGACCGCCTCGGTGCACCTGGGCCTGTCTCAGGTAGAGCTGACCGGCAACAGCATTTACGAGTACATCCACCCCGCCGA CCACGACGAGATGACGGCGGTGCTTACAGCCCACCAGCCCTACCACTCCCACTTCGTGCAGGAGTATGAGATCGAGCGG TCCTTTTTCCTGCGGATGAAATGCGTACTGGCCAAGAGGAACGCGGGGCTGACCTGCGGGGGCTACAAGGTCATCCACT GCAGCGGCTACCTGAAGATCCGCCAGTACAGCCTGGACATGTCCCCT | | Citation | Cheng L, Alvares LE, Ahmed MU, El-Hanfy AS, Dietrich S. The epaxial-hypaxial subdivision of the avian somite. Dev Biol. 2004 Oct 15;274(2):348-69. | | Copyright | Reprinted from Developmental Biology, Volume 274, Issue 2, Louise Cheng, Lúcia E. Alvares, Mohi U. Ahmend, Amira S. El-Hanfy, and Susanne Dietrich, The epaxial-hypaxial subdivision of the avian somite, Pages 348-369, Copyright 2004, with permission from Elsevier.
Copyright © 2004 Elsevier B.V. All rights reserved. | | Comments | Authors indicate the probe is from Pourquie et al., 1996 who said they cloned a 600bp fragment with an upstream primer MKEKSKN and 3'RACE. The 5' end fragment is Acc# U40058. The 600 bp sequence here was extracted from XM_419817 using this information. |
| Stage | Image (click image to view full size) | Location (click to highlight) | Comments (click to highlight) | | 19-20 |  | | stage 20 | | |
Entry 5| GEISHA Id | Sim1.Agarwala.2005 | Data Source | Publication | | Complete cDNA Template Probe | show ATGAAAGAGAAGTCCAAAAATGCTGCCCGGACTAGGCGGGAGAAAGAAAACAGCGAGTTTTATGAACTGGCTAAATTAC TGCCCCTGCCCTCGGCCATCACCTCCCAGCTGGACAAAGCATCCATAATCAGGCTCACCACCAGCTACCTCAAGATGCG GGTGGTTTTCCCAGAAGGACTGGGAGAAGCCTGGGGCCACTCCAGCCGCACCAGCCCGCTGGATAACGTCGGACGGGAG CTGGGATCGCATCTTTTGCAGACGCTGGACGGTTTCATATTCGTGGTGGCTCCGGATGGGAAGATCATGTACATCTCGG AGACCGCCTCGGTGCACCTGGGCCTGTCTCAGGTAGAGCTGACCGGCAACAGCATTTACGAGTACATCCACCCCGCCGA CCACGACGAGATGACGGCGGTGCTTACAGCCCACCAGCCCTACCACTCCCACTTCGTGCAGGAGTATGAGATCGAGCGG TCCTTTTTCCTGCGGATGAAATGCGTACTGGCCAAGAGGAACGCGGGGCTGACCTGCGGGGGCTACAAGGTCATCCACT GCAGCGGCTACCTGAAGATCCGCCAGTACAGCCTGGACATGTCCCCTTTCGACGGCTGCTACCAAAACGTCGGTTTGGT CGCCGTGGGCCACTCGTTGCCTCCCAGCGCAGTGACAGAGATCAAGCTGCACAGCAACATGTTCATGTTCCGGGCTAGC CTGGACATGAAGCTCATCTTCCTAGACTCCAGGGTGGCCGAGCTCACCGGGTACGAGCCCCAGGACCTGATCGAGAAGA CCCTTTACCATCACGTACACGGCTGTGACACCTTCCACCTGCGATGCGCGCATCACTTGTTGCTGGTGAAGGGCCAGGT GACCACCAAGTACTACCGCTTCCTGGCCAAGCACGGCGGCTGGGTGTGGGTGCAGAGCTATGCCACCATCGTGCACAAC AGCCGCTCGTCACGCCCGCACTGCATCGTCAGCGTTAACTACGTCCTTACGGATACTGAATATAAAGGACTACAGCTCT CCTTGGATCAGGTCACAGCTACCAAGCCGGCATTCTCATACGCAAATTCAACTCCGACCATAACGGATAATAGAAAGGG AAGCAAATCTCGCCTCTCGAGCACAAAGTCAAAATCAAGGACATCACCATACCCACAGTATTCCGGATTTCACACTGAG AGATCTGAATCTGACCATGAGAGCCAGTGGGGTGGGAGCCCCCTCACCGACACAGCCTCTCCCCAGCTGTTGGAGCCCA CAGACAGGCCGAGCTCCCAGCATCACGATGTCTCCTGTGCCTACAGACAGTACTCGGACCGCAGTGCTCTCTGCTATGG TTTTGCACTAGACCACTCCAGGCTGGGCGATGACAGACATTTCCATACTCAGGCCTGTGAGGGAGGCAGATGTGAAGCT GGCAGATATTTCCTTGGCACACCACAGCCGGGGAGGGAAGGCTGGTGGGGCTCCCGATCAGCCTTGCCCCTGACTAAGT CATCCCCTGAAAGCAGAGAGGCGTATGAAAACAGTATGCCCCACATAACTTCAGTGCACAGGATTCACGGGAGAGGACA CTGGGATGAGGACAGTGTTGTTAGCTCTCCTGATCCTGGCTCTGCCAGTGAATCTGGTGACCGATACCGTGCTGAACAG TATCAGAGCAGCCCACATGAGCCCAGCAAAATTGAAACTCTAATAAGAGCCACCCAGCAAATGATCAAAGAGGAAGAAA ACAGGCTACAGCTACGGAAAACAACCCCTGATCCACTGATCTCCATTAATGGCACAGGGAAGAAACACACAATTTGTTT TGCAAACTACCCCCAGCAACAGTTGGCAGGGGATATCTGCCGCGTTCCGACGGTTGCCAACACTCCTCCTTGTGAACAC ATCCAGCAACGGGATGGAAAAATTATGAGCCCTCATGAAAATGACTATGACAACAGTCCCACAACATTGTCTAGGATAA GCAGTCCCAATTCTGACCGAATATCAAAATCTAGCTTGGTACTAGCTAAAGACTACCTGAATACAGACATGTCCCCTCA TCAAACTCCAGGTGATCATCCAGCAGCTTCTCCAAATTATTACAACTCCCACAGGCAGTACTTTGATAAGCATGCTTAC ACGCTAACTGGGTATGCCCTGGAGCATCTATACGACACTGAAGCCATTAGAAACTATTCACTAGGCTGCAATGGATCAC ACTTTGATGTGACTTCTCACTTAAGGATGCAGCAAGATCCAGCACAAGGACACAAAGGGACATCCGTTATAATAACCAA TGGAAGCTGA | | Citation | Agarwala S, Aglyamova GV, Marma AK, Fallon JF, Ragsdale CW. Differential susceptibility of midbrain and spinal cord patterning to floor plate defects in the talpid2 mutant. Dev Biol. 2005 Dec 1;288(1):206-20. Epub 2005 Oct 21. | | Copyright | Copyright © 2005 Elsevier Inc. All rights reserved. | | Comments | According to the authors, "Digoxigenin
(DIG)- and fluorescein-labeled riboprobes were synthesized from chick cDNA plasmids..." As information provided was insufficient to verify exact sequence used to synthesize probe,the sequence below was obtained from NCBI (XM_419817). |
| Stage | Image (click image to view full size) | Location (click to highlight) | Comments (click to highlight) | | 25-26 |  | | stage 26 | | Neural Plate/Tube Spinal Cord
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Entry 6
MouseFrogFruit FlyZebra FinchZebrafish
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