GEISHA - A Chicken Embryo Gene Expression Database
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SMAD1
SMAD family member 1

Gene
Official SymbolSMAD1
Official Full NameSMAD family member 1
CGNC ID7584
also known asmothers against decapentaplegic homolog 1|BMP pathway effector|BMP signal transducer Smad1|SMAD, mothers against DPP homolog 1, Smad1
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_001201455
PolypeptideNP_001188384
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.1380
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly33529FBgn0011648
Human4086MIM:601595
Mouse17125ENSMUSG00000031681All phenotypic alleles (11):Targeted, knock-out(5) Targeted, other(6) MGI:109452
Xenopus493211, 379664, 3994571018192
Zebrafish30628ENSDARG00000027199ZDB-GENE-991119-8ZFIN:ZDB-GENE-991119-8
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene395680
Ensembl Gene
KEGGgga:395680

Entry 1

GEISHA IdSmad1.Zuzarte.2004Data SourcePublication
Complete cDNA Template Probeshow
GAAGAAGAAAAATGGGCAGAGAAGGCTGTTGATGCACTAGTGAAAAAACTAAAGAAGAAAAAAGGTGCTATGGAGGAGC
TGGAGAAAGCGTTAAGCTGTCCTGGTCAGCCCAGCAACTGTGTCACAATTCCTCGGTCCTTGGATGGCCGGCTTCAGGT
TTCACACCGGAAAGGGCTGCCGCATGTAATTTACTGCAGAGTGTGGCGCTGGCCAGACCTGCAAAGCCATCATGAACTG
AAACCACTGGAATGCTGCGAGTTTCCTTTTGGTTCAAAACAGAAGGAGGTCTGCATCAATCCTTACCACTACAAGCGGG
TAGAAAGTCCTGTTCTACCTCCGGTGCTGGTTCCAAGGCACAGCGAATACAACCCTCAGCACAGCCTCTTGGCTCAGTT
CCGCAACTTGGGACAAAATGAGCCCCACATGCCACACAACGCTACTTTCCCGGACTCTTTTCAGCAACCCAACAGTCAC
CCGTTCCCCCATTCGCCAAACAGCAGCTATCCAAACTCGCCTGGAAGCAGCAGTAGCACCTACCCACATTCTCCAGCCA
GCTCAGACCCAGGAAGCCCTTTTCAGATGCCAGCTGATACTCCTCCTCCTGCTTACCTGCCTCCGGAAGATCAGATGAC
ACACGATACCTCCCAGCCAATGGATACCAACATGATGGCACCCGGAATCCACCCTGACATACACAGAGGAGATGTTCAG
GCTGTTGCTTATGAAGAGCCGAAGCATTGGTGC
CitationZuzarte-Luís V, Montero JA, Rodriguez-León J, Merino R, Rodríguez-Rey JC, Hurlé JM. A new role for BMP5 during limb development acting through the synergic activation of Smad and MAPK pathways. Dev Biol. 2004 Aug 1;272(1):39-52.
CopyrightReprinted from Developmental Biology, Volume 272, Issue 1, V Zuzarte-Luıs, J.A. Montero, J Rodriguez-León, R Merino, J.C Rodrıguez-Rey, and J.M Hurlé, A new role for BMP5 during limb development acting through the synergic activation of Smad and MAPK pathways, Pages 39-52, Copyright 2004, with permission from Elsevier. Copyright © 2004 Elsevier B.V. All rights reserved.
CommentsFragments of chicken Smad1 (744 bp)... ... genes were obtained by RT-PCR. cSmad1, 5′-GARGARGARAARTGGGC-3′ (sense) and 5′-RCACCARTGYTTNGGYTC-3′ (antisense).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25-28
stage 28
Leg Mesenchyme
Wing Mesenchyme
 

Entry 2

GEISHA IdSMAD1.LeDréau.2012Data SourcePublication
Complete cDNA Template Probeshow
ATGAACGTGACAAGTTTATTTTCCTTCACCAGCCCAGCAGTGAAGAGGCTGTTGGGGTGGAAGCAGGGAGATGAAGAAG
AAAAATGGGCAGAGAAGGCTGTTGATGCACTAGTGAAAAAACTAAAGAAGAAAAAAGGTGCTATGGAGGAGCTGGAGAA
AGCGTTAAGCTGTCCTGGTCAGCCCAGCAACTGTGTCACAATTCCTCGGTCCTTGGATGGCCGGCTTCAGGTTTCACAC
CGGAAAGGGCTGCCGCATGTAATTTACTGCAGAGTGTGGCGCTGGCCAGACCTGCAAAGCCATCATGAACTGAAACCAC
TGGAATGCTGCGAGTTTCCTTTTGGTTCAAAACAGAAGGAGGTCTGCATCAATCCTTACCACTACAAGCGGGTAGAAAG
TCCTGTTCTACCTCCGGTGCTGGTTCCAAGGCACAGCGAATACAACCCTCAGCACAGCCTCTTGGCTCAGTTCCGCAAC
TTGGGACAAAATGAGCCCCACATGCCACACAACGCTACTTTCCCGGACTCTTTTCAGCAACCCAACAGTCACCCGTTCC
CCCATTCGCCAAACAGCAGCTATCCAAACTCGCCTGGAAGCAGCAGTAGCACCTACCCACATTCTCCAGCCAGCTCAGA
CCCAGGAAGCCCTTTTCAGATGCCAGCTGATACTCCTCCTCCTGCTTACCTGCCTCCGGAAGATCAGATGACACACGAT
ACCTCCCAGCCAATGGATACCAACATGATGGCACCCGGAATCCACCCTGACATACACAGAGGAGATGTTCAGGCTGTTG
CTTATGAAGAGCCGAAGCATTGGTGCTCCATTGTTTATTACGAGCTGAATAATCGTGTTGGGGAGGCCTTCCATGCCTC
TTCCACCAGCATCCTGGTGGATGGCTTCACTGATCCTTCAAACAACAAAAACAGATTTTGCCTGGGGCTGCTCTCCAAT
GTTAACCGGAATTCCACCATTGAGAATACAAGGAGGCACATTGGAAAAGGTGTTCATCTCTATTATGTTGGTGGAGAAG
TGTACGCTGAATGCCTCAGCGACAGCAGTATTTTTGTGCAAAGTCGAAACTGCAACTACCACCATGGTTTCCATCCAAC
CACAGTGTGCAAAATTCCCAGTGGCTGCAGTTTGAAGATTTTCAATAATCAGGAGTTCGCTCAGCTCTTAGCACAGTCG
GTGAACCATGGCTTTGAGACGGTGTATGAGCTTACCAAGATGTGCACTCTCCGCATGAGTTTTGTAAAGGGTTGGGGAG
CTGAATATCATCGACAAGATGTAACGAGCACTCCATGCTGGATAGAGATACACCTTCACGGTCCCCTTCAGTGGCTGGA
TAAAGTACTTACTCAGATGGGCTCTCCTCATAATCCTATTTCTTCAGTGTCTTAAGGTCCCAAGCTCCTGCATTTTGGA
AACAATTGAGCCTTGCATGTACTTGAAGGACGTATGAGTCAGACACAGTTTTTTTCATTTTCCCCCCCACCCCGAACTG
GCAACAGCTGAATAAGAGCCATGAAAATAATTTACTTCTGTGACCAACTGTTGGATTTGGGGAAAAAAACAACACAACA
AAACAAAAAA
CitationLe Dréau G, Garcia-Campmany L, Rabadán MA, Ferronha T, Tozer S, Briscoe J, Martí E. Canonical BMP7 activity is required for the generation of discrete neuronal populations in the dorsal spinal cord. Development. 2012 Jan;139(2):259-68.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_001201455.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 18
stage 18
Neural Plate/Tube
Spinal Ganglia and Nerves
 
19-24
stage 24
Neural Plate/Tube
Spinal Ganglia and Nerves
 

Entry 3

GEISHA IdSmad1.Gont.2000Data SourcePublication
Complete cDNA Template Probeshow
GAATTCAAGCGCTACTTTCCCGGACTCTTTTCAGCAACCCAACAGTCACCCGTTCCCCCATTCGCCAAACAGCAGCTAT
CCAAACTCGCCTGGAAGCAGCAGTAGCACCTACCCACATTCTCCAGCCAGCTCAGACCCAGGAAGCCCTTTTCAGATGC
CAGCTGATACTCCTCCTCCTGCTTACCTGCCTCCGGAAGATCAGATGACACACGATACCTCCCAGCCAATGGATACCAA
CATGATGGCACCCGGAATCCACCCTGACATACACAGAGGAGATGTTCAGGCTGTTGCTTATGAAGAGCCGAAGCATTGG
TGCTCCATTGTTTATTACGAGCTGAATAATCGTGTTGGGGAGGCCTTCCATGCCTCTTCCACCAGCATCCTGGTGGATG
GCTTCACTGATCCTTCAAACAACAAAAACAGATTTTGCCTGGGGCTGCTCTCCAATGTTAACCGGAATTCCACCATTGA
GAATACAAGGAGGCACATTGGAAAAGGTGTTCATCTCTATTATGTTGGTGGAGAAGTGTACGCTGAATGCCTCAGCGAC
AGCAGTATTTTTGTGCAAAGTCGAAACTGCAACTACCACCATGGTTTCCATCCAACCACAGTGTGCAAAATTCCCAGTG
GCTGCAGTTTGAAGATTTTCAATAATCAGGAGTTCGCTCAGCTCTTAGCACAGTCGGTGAACCATGGCTTTGAGACGGT
GTATGAGCTTACCAAGATGTGCACTCTCCGCATGAGTTTTGTAAAGGGTTGGGGAGCTGAATATCATCGACAAGATGTA
ACGAGCACTCCATGCTGGATAGAGATACACCTTCACGGTCCCCTTCAGTGGCTGGATAAAGTACTTACTCAGATGGGCT
CTCCTCATAATCCTATTTCTTCAGTGTCTTAAGGTCCCAAGCTCCTGCATTTTGGAAACAATTGAGCCTTGCATGTACT
TGAAGGACGTATGAGTCAGACACAGTTTTTTTCATTTTCCCCCCCACCCCGAACTGTCAACAGCTGAATAAGAGCCATG
AAAATAATTTACTTCTGTGACCAACTGTTGGATTTGGGGAAAAAAACAACACAACAAAACAAAAAACCAAAAACAAAAA
ACAACCCCTTTGACATAATACTGTTGGTATCAAGTATCTTAGTTTACATAGTAACATTCTATTGCAAAGTTGATTTACA
GGCCTTGTCATAAAGGAGGCTACTGAGCCAAAACAACAATCTCTTGGACTGAGTTCACGAAGGAGTTTCCTATAGTTGG
CACTCTGAGATTCTCTTCCTTCTTGACATCCAGCACTCACTGCTTTTTTTCCCCCACGTTATCCTCTTGGGCTAAGAGC
TGATGTTGGTGAAGCCTGCTTTTAGCAGGCTTTCTGCAGTATGTTTTAAAACCATTTGTTTAAGCTGATAGTTATTCTT
CTCTTTATAAGACAAAAACCAACCAAACAAACAAAAAAACCAAACACCTAACATATAGTTTTAATATCAATATCTTGTA
ATAATCTTGGAAATTGTGTCCTGACCATACTGCTGTAAGAATGTTAGGTATCTTTTTTGGTAAATGTATTTATGGTGTA
TTTGGAAGCTTAGAAATCCTTTAGACGTAGACCCATAAAGGAATTAGGAGTATCTGAATGGGGGGAAGAGGGAGTGGGA
AGAGATGATGACAACCGAAATGTAGAATATATTGTAAACATAGGTTGTTAGTTTAAACTGAGGTCTGAGTTTTGCTGTG
CATTTCATTTTTATCGTGGCTTCACCTTGTTAATTCTGACTTTTTTTTGCCTCTTCCTTTTTCTCCCAGAGCAATTGCG
CAGTTGGGTAATTCTTTTACCTGTGAAGAGGACGAAATGATTAATTCCTGCAGTTTGAAGGCTGCAGCTCTATGTATTT
CAAGACAAAGTTGTACAGTGTGCTCTTTAACTATTGAGCAGTTTTATACAGTGTATGTAACAGAAATAGGCTTTTAATT
TTGTAAGAGAGTCTTGTTTTGCCAAATCTAGAAACTGTTAATTGTTTGGAGGGCTTCAAAATCCCCATGTGGGTCTGTT
TCAAACTTTTAAAAATATATATATTTTTAATTTTTTTTTACTGCTTGGTTTATTTTCTTCTCTTTGATCTTTTATATTC
ATGTAAGCTGTAGTACTTTAAGTACCTTTATTCCAAACTTAGTGGGTCCTCTTTACTGGAAGTTTCGAATAAAACCTGT
TGTTACTGCTTACATTTGATTAAAAAGCTT
CitationGont L, Lough J. Differential expression of cSmad1 and cSmad5 in the primitive streak during chick embryo gastrulation. Anat Rec. 2000 Sep 1;260(1):102-5.
CopyrightCopyright © 2000 Wiley‐Liss, Inc.
CommentsAuthors indicated that 1781 nt antisense riboprobe was yielded through linearization with EcoRI of AF143239. As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence above was the whole sequence of NCBI acc# AF143239.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
1-3
stage 2
stage 3
Primitive Streak
 
4-6
stage 4
stage 4
stage 5
stage 6
Ectoderm
Epiblast
Mesoderm
Primitive Streak
 
all
 
  
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.1380

Mouse

EmageMGI:109452
EurexpressMGI:109452
MGI GXDMGI:109452

Frog

Xenbase1018192

Fruit Fly

BDGPFBgn0011648

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-991119-8
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