GEISHA - A Chicken Embryo Gene Expression Database
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SOX3
SRY-box 3

The human orthologue of this gene is associated
with the following human diseases:
Gene
Official SymbolSOX3
Official Full NameSRY-box 3
CGNC ID49006
also known asCH3, SRY-related protein CH3|SRY (sex determining region Y)-box 3|cSox3|transcription factor SOX-3|transcription factor SOX3, SRY-related protein CH3, CH03, Sox3
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_204195
PolypeptideNP_989526
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.3795
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human6658ENSG00000134595MIM:313430MIM:313430
Mouse20675ENSMUSG00000045179All phenotypic alleles (3):Targeted, knock-out(1) Targeted, other(2) MGI:98365
Xenopus493228, 399335484814
Zebrafish30529ENSDARG00000053569ZDB-GENE-980526-333ZFIN:ZDB-GENE-980526-333
Gene Ontology
Molecular FunctionDNA binding, RNA polymerase II core promoter sequence-specific DNA binding, more...RNA polymerase II transcription corepressor activity
Biological Processface development, hypothalamus development, negative regulation of neuron differentiation, more...negative regulation of transcription from RNA polymerase II promoter, pituitary gland development, sensory organ development
Cellular Componentnucleus
Links to other databases
Entrez Gene374019
Ensembl Gene
KEGGgga:374019

Entry 1

GEISHA IdSox3.Mikawa.2004Data SourcePublication
Complete cDNA Template Probeshow
TGCGCGTCGCTCAGCGCTGCCCGCGGGAACCTCCGCTGCACCTCGGGGAGCGGCACGGGAAAACTCCTTCCCCCTCCTG
CGGCCGCCGCCCGGACCGGTTCTTTCTTTTACTCTTATTATTTTGAACTTCCTTTCCCCGAGCTGTGCCCGCCCGTCTG
CCACCCTGGCGCATCTCTTACCGGCCCCGGCCATGTACAGCATGCTGGAGACCGAGATCAAGACGCCGCAGCCCACGCC
GGGCAGCGCCGGGGGGAACCCGGCCCCGGGCGGCAACGGCAAAGGCGGCGGCGGGGCCGGCAGCGGAGCGGGTGCCGGG
TCGGACCAGGACCGGGTGAAGCGCCCCATGAACGCCTTCATGGTGTGGTCCCGGGGCCAGCGGCGGAAGATGGCCCAGG
AGAATCCCAAGATGCACAACTCGGAGATCAGCAAGCGCCTCGGGGCCGATTGGAAGCTGCTGAGCGATGCCGAGAAGCG
GCCCTTCATCGACGAGGCCAAGAGGCTGCGGGCCGTGCACATGAAGGAGTACCCGGATTACAAATACCGGCCCCGGAGG
AAGACCAAGACCTTGCTGAAGAAGGACAAATACTCGCTGCCGGGCAACCTGCTGGCCCCCGGAGGGGGCAACGCGGTGA
GCAGCCCCGTCGGGGTGGGCCAGAGGATTGACACTTACGCCCATATGAACGGTTGGACCAACGGGGCTTACTCCCTGAT
GCAAGACCAGCTGGGTTACGGGCAGCACCCGGGCATGAACAGCCCGCAGCTGCAGCAGATGCACCGCTACGACATGCCG
GGCCTGCAGTACAGCCCCATGATGTCCACGGCGCAGACCTACATGAACGCCGCCTCCACCTACAGCATGTCCCCCGCCG
CCTACGGCCAGCAGCCCTCCACGGCCATGAGCCTGGGCTCCATGGGCTCGGTGGTGAAGTCCGAGCCCAGCTCGCCTCC
GCCGGCCATCACCTCGCACTCGCAGAGGGCCTGCCTGGGAGACCTGCGGGATATGATCAGCATGTACCTGCCCCCGGGG
GGCGACGCCACAGACCCTTCGGCCCTGCAGGGCAGCAGGTTGCACAGTGTGCACCAGCACTACCAGAGTGCCGGGACTG
CCGTGAACGGCACCGTACCACTAACTCACATATAAACGAACTGGCCTCCTCCGGACGGCTCCTCATCGCAACCCCAGCG
CCGGGACGTGCGGCTCAGCAGACTCGATACTAACTTGGGAGAAATTTTAAACAGAAAATCCGTTCGTTGTCTTCATTTT
CTTTTTTCTTTTGTACAAAAAAAAAAACGATTTGGGCAATCTGTTCTTTTAACAGAGCGCAACCGCCTCCTAAAGCCCC
GCGAAGTTCTTAAGCCACGGCGACTCTCCCGGTCTCCGCGGGGTTGGGCGTAGTTTTGTTCGCTTCCGAGTCTTAAAGA
TGGTGCATCGCCCCGTTCCATTTTAGCGTTGCAATGACAAAACGAAAAACCGACCCGGCGGGCGTTGTTTTCAAACTCA
GTCGTTCCGTTGTTTACATTTTCGTTGTGGTTACTGAAAGTGTTGTTCTTCCCACCTTGCCGAGCGCCGCTCGGTTCGT
GTCCGCAATTCGTAGAGTTTTTAACTTTAGGGTTTTGTTCCTACGGAAAGGGGGCGGTGGGAGAGAGCTGTGCGGGTCG
CAAACCCTTTCTTTTATTTATAGCAAGTTGTGTGTCTGGGTTTTTCTTAAGCTGTAAACTTATGTAAATCGGTTTGTGA
ATTTTACTGTGAACGATGTTTTGACATATCAGACCAAGAAAAGTTTTAATTTTTTGTTTGTTTGTTTTGTTTACCGGAT
TTCTTCC
CitationMikawa, T, Poh, A, Kelly, K, Ishii, Y, Reese, D. Induction and Patterning of the Primitive Streak, an Organizing Center of Gastrulation in the Amniote. Dev Dyn. 2004 Mar;229(3):422-32.
CopyrightCopyright © 2004 Wiley-Liss, Inc.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
1-3
stage 3
Epiblast
anterolateral epiblast

Entry 2

GEISHA IdSox3.Rex.1997Data SourcePublication
Complete cDNA Template Probeshow
TGCGCGTCGCTCAGCGCTGCCCGCGGGAACCTCCGCTGCACCTCGGGGAGCGGCACGGGAAAACTCCTTCCCCCTCCTG
CGGCCGCCGCCCGGACCGGTTCTTTCTTTTACTCTTATTATTTTGAACTTCCTTTCCCCGAGCTGTGCCCGCCCGTCTG
CCACCCTGGCGCATCTCTTACCGGCCCCGGCCATGTACAGCATGCTGGAGACCGAGATCAAGACGCCGCAGCCCACGCC
GGGCAGCGCCGGGGGGAACCCGGCCCCGGGCGGCAACGGCAAAGGCGGCGGCGGGGCCGGCAGCGGAGCGGGTGCCGGG
TCGGACCAGGACCGGGTGAAGCGCCCCATGAACGCCTTCATGGTGTGGTCCCGGGGCCAGCGGCGGAAGATGGCCCAGG
AGAATCCCAAGATGCACAACTCGGAGATCAGCAAGCGCCTCGGGGCCGATTGGAAGCTGCTGAGCGATGCCGAGAAGCG
GCCCTTCATCGACGAGGCCAAGAGGCTGCGGGCCGTGCACATGAAGGAGTACCCGGATTACAAATACCGGCCCCGGAGG
AAGACCAAGACCTTGCTGAAGAAGGACAAATACTCGCTGCCGGGCAACCTGCTGGCCCCCGGAGGGGGCAACGCGGTGA
GCAGCCCCGTCGGGGTGGGCCAGAGGATTGACACTTACGCCCATATGAACGGTTGGACCAACGGGGCTTACTCCCTGAT
GCAAGACCAGCTGGGTTACGGGCAGCACCCGGGCATGAACAGCCCGCAGCTGCAGCAGATGCACCGCTACGACATGCCG
GGCCTGCAGTACAGCCCCATGATGTCCACGGCGCAGACCTACATGAACGCCGCCTCCACCTACAGCATGTCCCCCGCCG
CCTACGGCCAGCAGCCCTCCACGGCCATGAGCCTGGGCTCCATGGGCTCGGTGGTGAAGTCCGAGCCCAGCTCGCCTCC
GCCGGCCATCACCTCGCACTCGCAGAGGGCCTGCCTGGGAGACCTGCGGGATATGATCAGCATGTACCTGCCCCCGGGG
GGCGACGCCACAGACCCTTCGGCCCTGCAGGGCAGCAGGTTGCACAGTGTGCACCAGCACTACCAGAGTGCCGGGACTG
CCGTGAACGGCACCGTACCACTAACTCACATATAAACAAACTGGCCTCCTCCGGACGGCTCCTCATCGCAACCCCAGCG
CCGGGACGTGCGGCTCAGCAGACTCGATACTAACTTGGGAGAAATTTTAAACAGAAAATCCGTTCGTTGTCTTCATTTT
CTTTTTTCTTTTGTACAAAAAAAAAAACGATTTGGGCAATCTGTTCTTTTAACAGAGTGCAACCGCCTCCTAAAGCCCC
GCGAAGTTCTTAAGCCACGGCGACTCTCCCGGTCTCCGCGGGGTTGGGCGTAGTTTTGTTCGCTTCCGAGTCTTAAAGA
TGGTGCATCGCCCCGTTCCATTTTAGCGTTGCAATGACAAAACGAAAAACCGACCCGGCGGGCGTTGTTTTCAAACTCA
GTCGTTCCGTTGTTTACATTTTCGTTGTGGTTACTGAAAGTGTTGTTCTTCCCACCTTGCCGAGCGCCGCTCGGTTCGT
GTCCGCAATTCGTAGAGTTTTTAACTTTAGGGTTTTGTTCCTACGGAAAGGGGGCGGTGGGAGAGAGCTGTGCGGGTCG
CAAACCCTTTCTTTTATTTATAGCAAGTTGTGTGTCTGGGTTTTTCTTAAGCTGTAAACTTATGTAAATCGGTTTGTGA
ATTTTACTGTGAACGATGTTTTGACATATCAGACGAAGAAAAGTTTTAATTTTTTGTTTGTTTGTTTTGTTTACCGGAT
TTCTTCC
CitationRex M, Orme A, Uwanogho D, Tointon K, Wigmore PM, Sharpe PT, Scotting PJ. Dynamic expression of chicken Sox2 and Sox3 genes in ectoderm induced to form neural tissue. Dev Dyn. 1997 Jul;209(3):323-32.
CopyrightWiley-Liss., Inc. 1997
CommentsInsufficient information in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # U12467).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
1-3
stage 2
stage 3
stage 3
Epiblast
Neural Plate/Tube
 
4-6
stage 4
stage 4
stage 5
stage 5
stage 6
Epiblast
Hensen's Node
Neural Plate/Tube
Blue stain: Sox 3
Red stain: Brachyury
7-8
stage 8
stage 8
stage 8
Neural Plate/Tube
 

Entry 3

GEISHA IdSox3.Barembaum.2007Data SourcePublication
Complete cDNA Template Probeshow
TGCGCGTCGCTCAGCGCTGCCCGCGGGAACCTCCGCTGCACCTCGGGGAGCGGCACGGGAAAACTCCTTCCCCCTCCTG
CGGCCGCCGCCCGGACCGGTTCTTTCTTTTACTCTTATTATTTTGAACTTCCTTTCCCCGAGCTGTGCCCGCCCGTCTG
CCACCCTGGCGCATCTCTTACCGGCCCCGGCCATGTACAGCATGCTGGAGACCGAGATCAAGACGCCGCAGCCCACGCC
GGGCAGCGCCGGGGGGAACCCGGCCCCGGGCGGCAACGGCAAAGGCGGCGGCGGGGCCGGCAGCGGAGCGGGTGCCGGG
TCGGACCAGGACCGGGTGAAGCGCCCCATGAACGCCTTCATGGTGTGGTCCCGGGGCCAGCGGCGGAAGATGGCCCAGG
AGAATCCCAAGATGCACAACTCGGAGATCAGCAAGCGCCTCGGGGCCGATTGGAAGCTGCTGAGCGATGCCGAGAAGCG
GCCCTTCATCGACGAGGCCAAGAGGCTGCGGGCCGTGCACATGAAGGAGTACCCGGATTACAAATACCGGCCCCGGAGG
AAGACCAAGACCTTGCTGAAGAAGGACAAATACTCGCTGCCGGGCAACCTGCTGGCCCCCGGAGGGGGCAACGCGGTGA
GCAGCCCCGTCGGGGTGGGCCAGAGGATTGACACTTACGCCCATATGAACGGTTGGACCAACGGGGCTTACTCCCTGAT
GCAAGACCAGCTGGGTTACGGGCAGCACCCGGGCATGAACAGCCCGCAGCTGCAGCAGATGCACCGCTACGACATGCCG
GGCCTGCAGTACAGCCCCATGATGTCCACGGCGCAGACCTACATGAACGCCGCCTCCACCTACAGCATGTCCCCCGCCG
CCTACGGCCAGCAGCCCTCCACGGCCATGAGCCTGGGCTCCATGGGCTCGGTGGTGAAGTCCGAGCCCAGCTCGCCTCC
GCCGGCCATCACCTCGCACTCGCAGAGGGCCTGCCTGGGAGACCTGCGGGATATGATCAGCATGTACCTGCCCCCGGGG
GGCGACGCCACAGACCCTTCGGCCCTGCAGGGCAGCAGGTTGCACAGTGTGCACCAGCACTACCAGAGTGCCGGGACTG
CCGTGAACGGCACCGTACCACTAACTCACATATAAACGAACTGGCCTCCTCCGGACGGCTCCTCATCGCAACCCCAGCG
CCGGGACGTGCGGCTCAGCAGACTCGATACTAACTTGGGAGAAATTTTAAACAGAAAATCCGTTCGTTGTCTTCATTTT
CTTTTTTCTTTTGTACAAAAAAAAAAACGATTTGGGCAATCTGTTCTTTTAACAGAGCGCAACCGCCTCCTAAAGCCCC
GCGAAGTTCTTAAGCCACGGCGACTCTCCCGGTCTCCGCGGGGTTGGGCGTAGTTTTGTTCGCTTCCGAGTCTTAAAGA
TGGTGCATCGCCCCGTTCCATTTTAGCGTTGCAATGACAAAACGAAAAACCGACCCGGCGGGCGTTGTTTTCAAACTCA
GTCGTTCCGTTGTTTACATTTTCGTTGTGGTTACTGAAAGTGTTGTTCTTCCCACCTTGCCGAGCGCCGCTCGGTTCGT
GTCCGCAATTCGTAGAGTTTTTAACTTTAGGGTTTTGTTCCTACGGAAAGGGGGCGGTGGGAGAGAGCTGTGCGGGTCG
CAAACCCTTTCTTTTATTTATAGCAAGTTGTGTGTCTGGGTTTTTCTTAAGCTGTAAACTTATGTAAATCGGTTTGTGA
ATTTTACTGTGAACGATGTTTTGACATATCAGACCAAGAAAAGTTTTAATTTTTTGTTTGTTTGTTTTGTTTACCGGAT
TTCTTCC
CitationBarembaum M, Bronner-Fraser M. Spalt4 mediates invagination and otic placode gene expression in cranial ectoderm. Development. 2007 Nov;134(21):3805-14.
CopyrightPublished by The Company of Biologists 2007
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204195).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-5
stage 5
stage 5
Neural Plate/Tube
 

Entry 4

GEISHA IdSox3.Abu-Elmagd.2001Data SourcePublication
Complete cDNA Template Probeshow
TGCGCGTCGCTCAGCGCTGCCCGCGGGAACCTCCGCTGCACCTCGGGGAGCGGCACGGGAAAACTCCTTCCCCCTCCTG
CGGCCGCCGCCCGGACCGGTTCTTTCTTTTACTCTTATTATTTTGAACTTCCTTTCCCCGAGCTGTGCCCGCCCGTCTG
CCACCCTGGCGCATCTCTTACCGGCCCCGGCCATGTACAGCATGCTGGAGACCGAGATCAAGACGCCGCAGCCCACGCC
GGGCAGCGCCGGGGGGAACCCGGCCCCGGGCGGCAACGGCAAAGGCGGCGGCGGGGCCGGCAGCGGAGCGGGTGCCGGG
TCGGACCAGGACCGGGTGAAGCGCCCCATGAACGCCTTCATGGTGTGGTCCCGGGGCCAGCGGCGGAAGATGGCCCAGG
AGAATCCCAAGATGCACAACTCGGAGATCAGCAAGCGCCTCGGGGCCGATTGGAAGCTGCTGAGCGATGCCGAGAAGCG
GCCCTTCATCGACGAGGCCAAGAGGCTGCGGGCCGTGCACATGAAGGAGTACCCGGATTACAAATACCGGCCCCGGAGG
AAGACCAAGACCTTGCTGAAGAAGGACAAATACTCGCTGCCGGGCAACCTGCTGGCCCCCGGAGGGGGCAACGCGGTGA
GCAGCCCCGTCGGGGTGGGCCAGAGGATTGACACTTACGCCCATATGAACGGTTGGACCAACGGGGCTTACTCCCTGAT
GCAAGACCAGCTGGGTTACGGGCAGCACCCGGGCATGAACAGCCCGCAGCTGCAGCAGATGCACCGCTACGACATGCCG
GGCCTGCAGTACAGCCCCATGATGTCCACGGCGCAGACCTACATGAACGCCGCCTCCACCTACAGCATGTCCCCCGCCG
CCTACGGCCAGCAGCCCTCCACGGCCATGAGCCTGGGCTCCATGGGCTCGGTGGTGAAGTCCGAGCCCAGCTCGCCTCC
GCCGGCCATCACCTCGCACTCGCAGAGGGCCTGCCTGGGAGACCTGCGGGATATGATCAGCATGTACCTGCCCCCGGGG
GGCGACGCCACAGACCCTTCGGCCCTGCAGGGCAGCAGGTTGCACAGTGTGCACCAGCACTACCAGAGTGCCGGGACTG
CCGTGAACGGCACCGTACCACTAACTCACATATAAACGAACTGGCCTCCTCCGGACGGCTCCTCATCGCAACCCCAGCG
CCGGGACGTGCGGCTCAGCAGACTCGATACTAACTTGGGAGAAATTTTAAACAGAAAATCCGTTCGTTGTCTTCATTTT
CTTTTTTCTTTTGTACAAAAAAAAAAACGATTTGGGCAATCTGTTCTTTTAACAGAGCGCAACCGCCTCCTAAAGCCCC
GCGAAGTTCTTAAGCCACGGCGACTCTCCCGGTCTCCGCGGGGTTGGGCGTAGTTTTGTTCGCTTCCGAGTCTTAAAGA
TGGTGCATCGCCCCGTTCCATTTTAGCGTTGCAATGACAAAACGAAAAACCGACCCGGCGGGCGTTGTTTTCAAACTCA
GTCGTTCCGTTGTTTACATTTTCGTTGTGGTTACTGAAAGTGTTGTTCTTCCCACCTTGCCGAGCGCCGCTCGGTTCGT
GTCCGCAATTCGTAGAGTTTTTAACTTTAGGGTTTTGTTCCTACGGAAAGGGGGCGGTGGGAGAGAGCTGTGCGGGTCG
CAAACCCTTTCTTTTATTTATAGCAAGTTGTGTGTCTGGGTTTTTCTTAAGCTGTAAACTTATGTAAATCGGTTTGTGA
ATTTTACTGTGAACGATGTTTTGACATATCAGACCAAGAAAAGTTTTAATTTTTTGTTTGTTTGTTTTGTTTACCGGAT
TTCTTCC
CitationAbu-Elmagd M, Ishii Y, Cheung M, Rex M, Le Rouëdec D, Scotting PJ. cSox3 expression and neurogenesis in the epibranchial placodes. Dev Biol. 2001 Sep 15;237(2):258-69.
CopyrightCopyright © 2001 Academic Press. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204195).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 10
stage 12
Ectoderm
Neural Plate/Tube
 
13-18
stage 13
stage 15
stage 17
stage 18
stage 18
stage 18
stage 18
stage 18
stage 18
stage 18
Ectoderm
Neural Plate/Tube
Pharyngeal Arches and Clefts
Placcode
First Nodose Placode
Geniculate Placode
Petrosal Placode
Second Nodose Placode

Entry 5

GEISHA IdSox3.Chapman.2008Data SourceDirect Submission
Complete cDNA Template Probeshow
GGGCTCAGCGCTGCCCGCGGGGAACCTCCGCTGCACCTCGGGGAGCGGCACGGGAAAACTCCTTCCCCCTCCTGCGGCC
GCCGCCCGGACCGGTTCTTTCTTTTACTCTTATTATTTTGAACTTCCTTTCCCCGAGCTGTGCCCGCCCGTCTGCCACC
CTGGCGCATCTCTTACCGGCCCCGGCCATGTACAGCATGCTGGAGACCGAGATCAAGACGCCGCAGCCCACGCGGGCAG
CGCGGGGGGAACCCGCCCGGGCGGCAACGGCAAAGGTCGGCGGGGCGGCCGCAGCGGACGGGTGCCGGTCGGACCAGGA
CCGGGTGAAGCGCCCCATGAACGCCTTCATGGTGTGGTCCCGGGGCCAGCGCCGGAAGATGGCCCAGGAGAATCCAAAG
ATGCACAACTCGGAGATCAGCAAGCGCCTCGGGGCCGATTGGAAGCTGCTGAGCGATGCCGAGAAGCGGCCCTTCATCG
ACGAGGCCAAGAGGCTGCGGGCCGTGCACATGAAGGAGTACCCGGATTACAAATACCGGCCCCGGAGGAAGACCAAGAC
CTTGCTGAAGAAGGACAAATACTCGCTGCCGGGCAACCTCTGGCCCCCGGGCAGCGCGGGAGCAGCCGCCGTCGGGGTG
GGCCAGAGGATTGACACTTACGCCCATATGAACGGTTGGACCAACGGGGCTTACTCCCTGATGCAAGACCAGCTGGGTT
ACGGGCAGCACCCGGGCATGAACAGCCCGCAGCTGCAGCAGATGCACCGCTACGACATGCCGGGCCTGCAGTACAGCCC
CATGATGTCCACGGCGCAGACCTACATGAACGCCGGCCTCCACCTACAGCATGTCCCCCGCCCGTACGGCCAGCAGCCC
TCCACGGCCATGAGCCTGGGCTCCATGGGCTCGGTGGTGAAGTCCGAGCCCAGCTCCGCTCCGCCGGCCATCACCTCGC
ACTCGCAGAGGGCCTGCCTGGGAGAGCTGCGGGATATGATCAGCATGTACCTGGGCCCCGGGGGCGACGCCACACACCC
TTCGGCCCTGCAGGGCAGCAGGTTGCACAGTGTGCACCAGCACTACCAGAGTGCCGGGACTCGCGTGAACGGCACCGTA
CCACTAACTCACATATAAACAAACTGGCCTCCTCCGGACGGCTCCTCATCGCAACCCCAGCGCCGGGACGTGCGGCTCA
GCAGACTCGATACTAACTTGGGTAGAAATTTTAAACAGAAAATCCGTTCGTTGTCTTCATTTTCTTTTTTCTTTTGTAC
AAAAAAAAAAAACGATTTGGGCAATCTGTTCTTTTAACAGAGTGCAACCGCCTCCTAAAGCCCCGCGAAGTTCTTAAGC
CACGGCGACTCTCCCCGGTCTCCGCGGGGTTGGGCGTAGTTTTGTTCGCTTCCGAGTCTTAAAGATGGTGCATCGCCCC
GTTCCATTTTAGTCGTTGCAATGACAAAACGAAAAACCGACCCGGCGGGCGTTGTTTTCAAACTCAGTCGTTCCGTTGT
TTACATTTTCGTTGTGGTTACTGAAAGTGTTGTTCTTCCCACCTTGCGAGCGCCGCTCGGTTCGTGTCCGCATTCGTAG
AGTTTTTAACTTTAGGGTTTTGTTCCTACGGAAAGGGGGCGGTGGGAGAGAGCTGTGCGGGTCGCAAACCCTTTCTTTT
ATTTATAGCAAGTTGTGTGTCTGGGTTTTTCTTAAGCTGTAAACTTATGTAAATCGGTTTGTAATTTTACTGTGAACGA
TGTTTTGACATATCAGACGAAGAAAAGTTTTAATTTTTTGTTTGTTTGTTTTGTTTACCGGATTTCTTCC
CommentsImages Provided by Susan Chapman.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4
stage 4
Neural Plate/Tube
 

Entry 6

GEISHA IdSox3.Matsumata.2005Data SourcePublication
Complete cDNA Template Probeshow
TGCGCGTCGCTCAGCGCTGCCCGCGGGAACCTCCGCTGCACCTCGGGGAGCGGCACGGGAAAACTCCTTCCCCCTCCTG
CGGCCGCCGCCCGGACCGGTTCTTTCTTTTACTCTTATTATTTTGAACTTCCTTTCCCCGAGCTGTGCCCGCCCGTCTG
CCACCCTGGCGCATCTCTTACCGGCCCCGGCCATGTACAGCATGCTGGAGACCGAGATCAAGACGCCGCAGCCCACGCC
GGGCAGCGCCGGGGGGAACCCGGCCCCGGGCGGCAACGGCAAAGGCGGCGGCGGGGCCGGCAGCGGAGCGGGTGCCGGG
TCGGACCAGGACCGGGTGAAGCGCCCCATGAACGCCTTCATGGTGTGGTCCCGGGGCCAGCGGCGGAAGATGGCCCAGG
AGAATCCCAAGATGCACAACTCGGAGATCAGCAAGCGCCTCGGGGCCGATTGGAAGCTGCTGAGCGATGCCGAGAAGCG
GCCCTTCATCGACGAGGCCAAGAGGCTGCGGGCCGTGCACATGAAGGAGTACCCGGATTACAAATACCGGCCCCGGAGG
AAGACCAAGACCTTGCTGAAGAAGGACAAATACTCGCTGCCGGGCAACCTGCTGGCCCCCGGAGGGGGCAACGCGGTGA
GCAGCCCCGTCGGGGTGGGCCAGAGGATTGACACTTACGCCCATATGAACGGTTGGACCAACGGGGCTTACTCCCTGAT
GCAAGACCAGCTGGGTTACGGGCAGCACCCGGGCATGAACAGCCCGCAGCTGCAGCAGATGCACCGCTACGACATGCCG
GGCCTGCAGTACAGCCCCATGATGTCCACGGCGCAGACCTACATGAACGCCGCCTCCACCTACAGCATGTCCCCCGCCG
CCTACGGCCAGCAGCCCTCCACGGCCATGAGCCTGGGCTCCATGGGCTCGGTGGTGAAGTCCGAGCCCAGCTCGCCTCC
GCCGGCCATCACCTCGCACTCGCAGAGGGCCTGCCTGGGAGACCTGCGGGATATGATCAGCATGTACCTGCCCCCGGGG
GGCGACGCCACAGACCCTTCGGCCCTGCAGGGCAGCAGGTTGCACAGTGTGCACCAGCACTACCAGAGTGCCGGGACTG
CCGTGAACGGCACCGTACCACTAACTCACATATAAACGAACTGGCCTCCTCCGGACGGCTCCTCATCGCAACCCCAGCG
CCGGGACGTGCGGCTCAGCAGACTCGATACTAACTTGGGAGAAATTTTAAACAGAAAATCCGTTCGTTGTCTTCATTTT
CTTTTTTCTTTTGTACAAAAAAAAAAACGATTTGGGCAATCTGTTCTTTTAACAGAGCGCAACCGCCTCCTAAAGCCCC
GCGAAGTTCTTAAGCCACGGCGACTCTCCCGGTCTCCGCGGGGTTGGGCGTAGTTTTGTTCGCTTCCGAGTCTTAAAGA
TGGTGCATCGCCCCGTTCCATTTTAGCGTTGCAATGACAAAACGAAAAACCGACCCGGCGGGCGTTGTTTTCAAACTCA
GTCGTTCCGTTGTTTACATTTTCGTTGTGGTTACTGAAAGTGTTGTTCTTCCCACCTTGCCGAGCGCCGCTCGGTTCGT
GTCCGCAATTCGTAGAGTTTTTAACTTTAGGGTTTTGTTCCTACGGAAAGGGGGCGGTGGGAGAGAGCTGTGCGGGTCG
CAAACCCTTTCTTTTATTTATAGCAAGTTGTGTGTCTGGGTTTTTCTTAAGCTGTAAACTTATGTAAATCGGTTTGTGA
ATTTTACTGTGAACGATGTTTTGACATATCAGACCAAGAAAAGTTTTAATTTTTTGTTTGTTTGTTTTGTTTACCGGAT
TTCTTCC
CitationMatsumata M, Uchikawa M, Kamachi Y, Kondoh H. Multiple N-cadherin enhancers identified by systematic functional screening indicate its Group B1 SOX-dependent regulation in neural and placodal development. Dev Biol. 2005 Oct 15;286(2):601-17. Epub 2005 Sep 16.
CopyrightCopyright © 2005 Elsevier Inc. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204195).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 12
stage 12
Central Nervous System
Ear/Otic Placcode
Lens
Sensory Organs
 

Entry 7

GEISHA IdSox3.Linker.2004.Data SourcePublication
Complete cDNA Template Probeshow
TGCGCGTCGCTCAGCGCTGCCCGCGGGAACCTCCGCTGCACCTCGGGGAGCGGCACGGGAAAACTCCTTCCCCCTCCTG
CGGCCGCCGCCCGGACCGGTTCTTTCTTTTACTCTTATTATTTTGAACTTCCTTTCCCCGAGCTGTGCCCGCCCGTCTG
CCACCCTGGCGCATCTCTTACCGGCCCCGGCCATGTACAGCATGCTGGAGACCGAGATCAAGACGCCGCAGCCCACGCC
GGGCAGCGCCGGGGGGAACCCGGCCCCGGGCGGCAACGGCAAAGGCGGCGGCGGGGCCGGCAGCGGAGCGGGTGCCGGG
TCGGACCAGGACCGGGTGAAGCGCCCCATGAACGCCTTCATGGTGTGGTCCCGGGGCCAGCGGCGGAAGATGGCCCAGG
AGAATCCCAAGATGCACAACTCGGAGATCAGCAAGCGCCTCGGGGCCGATTGGAAGCTGCTGAGCGATGCCGAGAAGCG
GCCCTTCATCGACGAGGCCAAGAGGCTGCGGGCCGTGCACATGAAGGAGTACCCGGATTACAAATACCGGCCCCGGAGG
AAGACCAAGACCTTGCTGAAGAAGGACAAATACTCGCTGCCGGGCAACCTGCTGGCCCCCGGAGGGGGCAACGCGGTGA
GCAGCCCCGTCGGGGTGGGCCAGAGGATTGACACTTACGCCCATATGAACGGTTGGACCAACGGGGCTTACTCCCTGAT
GCAAGACCAGCTGGGTTACGGGCAGCACCCGGGCATGAACAGCCCGCAGCTGCAGCAGATGCACCGCTACGACATGCCG
GGCCTGCAGTACAGCCCCATGATGTCCACGGCGCAGACCTACATGAACGCCGCCTCCACCTACAGCATGTCCCCCGCCG
CCTACGGCCAGCAGCCCTCCACGGCCATGAGCCTGGGCTCCATGGGCTCGGTGGTGAAGTCCGAGCCCAGCTCGCCTCC
GCCGGCCATCACCTCGCACTCGCAGAGGGCCTGCCTGGGAGACCTGCGGGATATGATCAGCATGTACCTGCCCCCGGGG
GGCGACGCCACAGACCCTTCGGCCCTGCAGGGCAGCAGGTTGCACAGTGTGCACCAGCACTACCAGAGTGCCGGGACTG
CCGTGAACGGCACCGTACCACTAACTCACATATAAACGAACTGGCCTCCTCCGGACGGCTCCTCATCGCAACCCCAGCG
CCGGGACGTGCGGCTCAGCAGACTCGATACTAACTTGGGAGAAATTTTAAACAGAAAATCCGTTCGTTGTCTTCATTTT
CTTTTTTCTTTTGTACAAAAAAAAAAACGATTTGGGCAATCTGTTCTTTTAACAGAGCGCAACCGCCTCCTAAAGCCCC
GCGAAGTTCTTAAGCCACGGCGACTCTCCCGGTCTCCGCGGGGTTGGGCGTAGTTTTGTTCGCTTCCGAGTCTTAAAGA
TGGTGCATCGCCCCGTTCCATTTTAGCGTTGCAATGACAAAACGAAAAACCGACCCGGCGGGCGTTGTTTTCAAACTCA
GTCGTTCCGTTGTTTACATTTTCGTTGTGGTTACTGAAAGTGTTGTTCTTCCCACCTTGCCGAGCGCCGCTCGGTTCGT
GTCCGCAATTCGTAGAGTTTTTAACTTTAGGGTTTTGTTCCTACGGAAAGGGGGCGGTGGGAGAGAGCTGTGCGGGTCG
CAAACCCTTTCTTTTATTTATAGCAAGTTGTGTGTCTGGGTTTTTCTTAAGCTGTAAACTTATGTAAATCGGTTTGTGA
ATTTTACTGTGAACGATGTTTTGACATATCAGACCAAGAAAAGTTTTAATTTTTTGTTTGTTTGTTTTGTTTACCGGAT
TTCTTCC
Citation Linker C, Stern CD (2004). Neural induction requires BMP inhibition only as a late step, and involves signals other than FGF and Wnt antagonists. Development. 2004 Nov;131(22):5671-81.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc #NM_204195).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
1-3
stage 3
Neural Plate/Tube
Stage 3+

Entry 8

GEISHA IdSox3.Streit.1999Data SourcePublication
Complete cDNA Template Probeshow
TGCGCGTCGCTCAGCGCTGCCCGCGGGAACCTCCGCTGCACCTCGGGGAGCGGCACGGGAAAACTCCTTCCCCCTCCTG
CGGCCGCCGCCCGGACCGGTTCTTTCTTTTACTCTTATTATTTTGAACTTCCTTTCCCCGAGCTGTGCCCGCCCGTCTG
CCACCCTGGCGCATCTCTTACCGGCCCCGGCCATGTACAGCATGCTGGAGACCGAGATCAAGACGCCGCAGCCCACGCC
GGGCAGCGCCGGGGGGAACCCGGCCCCGGGCGGCAACGGCAAAGGCGGCGGCGGGGCCGGCAGCGGAGCGGGTGCCGGG
TCGGACCAGGACCGGGTGAAGCGCCCCATGAACGCCTTCATGGTGTGGTCCCGGGGCCAGCGGCGGAAGATGGCCCAGG
AGAATCCCAAGATGCACAACTCGGAGATCAGCAAGCGCCTCGGGGCCGATTGGAAGCTGCTGAGCGATGCCGAGAAGCG
GCCCTTCATCGACGAGGCCAAGAGGCTGCGGGCCGTGCACATGAAGGAGTACCCGGATTACAAATACCGGCCCCGGAGG
AAGACCAAGACCTTGCTGAAGAAGGACAAATACTCGCTGCCGGGCAACCTGCTGGCCCCCGGAGGGGGCAACGCGGTGA
GCAGCCCCGTCGGGGTGGGCCAGAGGATTGACACTTACGCCCATATGAACGGTTGGACCAACGGGGCTTACTCCCTGAT
GCAAGACCAGCTGGGTTACGGGCAGCACCCGGGCATGAACAGCCCGCAGCTGCAGCAGATGCACCGCTACGACATGCCG
GGCCTGCAGTACAGCCCCATGATGTCCACGGCGCAGACCTACATGAACGCCGCCTCCACCTACAGCATGTCCCCCGCCG
CCTACGGCCAGCAGCCCTCCACGGCCATGAGCCTGGGCTCCATGGGCTCGGTGGTGAAGTCCGAGCCCAGCTCGCCTCC
GCCGGCCATCACCTCGCACTCGCAGAGGGCCTGCCTGGGAGACCTGCGGGATATGATCAGCATGTACCTGCCCCCGGGG
GGCGACGCCACAGACCCTTCGGCCCTGCAGGGCAGCAGGTTGCACAGTGTGCACCAGCACTACCAGAGTGCCGGGACTG
CCGTGAACGGCACCGTACCACTAACTCACATATAAACGAACTGGCCTCCTCCGGACGGCTCCTCATCGCAACCCCAGCG
CCGGGACGTGCGGCTCAGCAGACTCGATACTAACTTGGGAGAAATTTTAAACAGAAAATCCGTTCGTTGTCTTCATTTT
CTTTTTTCTTTTGTACAAAAAAAAAAACGATTTGGGCAATCTGTTCTTTTAACAGAGCGCAACCGCCTCCTAAAGCCCC
GCGAAGTTCTTAAGCCACGGCGACTCTCCCGGTCTCCGCGGGGTTGGGCGTAGTTTTGTTCGCTTCCGAGTCTTAAAGA
TGGTGCATCGCCCCGTTCCATTTTAGCGTTGCAATGACAAAACGAAAAACCGACCCGGCGGGCGTTGTTTTCAAACTCA
GTCGTTCCGTTGTTTACATTTTCGTTGTGGTTACTGAAAGTGTTGTTCTTCCCACCTTGCCGAGCGCCGCTCGGTTCGT
GTCCGCAATTCGTAGAGTTTTTAACTTTAGGGTTTTGTTCCTACGGAAAGGGGGCGGTGGGAGAGAGCTGTGCGGGTCG
CAAACCCTTTCTTTTATTTATAGCAAGTTGTGTGTCTGGGTTTTTCTTAAGCTGTAAACTTATGTAAATCGGTTTGTGA
ATTTTACTGTGAACGATGTTTTGACATATCAGACCAAGAAAAGTTTTAATTTTTTGTTTGTTTGTTTTGTTTACCGGAT
TTCTTCC
CitationStreit A, Stern CD. Establishment and maintenance of the border of the neural plate in the chick: involvement of FGF and BMP activity. Mech Dev. 1999 Apr;82(1-2):51-66.
CopyrightCopyright © 1999 Elsevier Science Ireland Ltd. All rights reserved
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204195).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 5
Epiblast
Neural Plate/Tube
 
7-8
stage 8
stage 8
Neural Plate/Tube
 

Entry 9

GEISHA IdSox-3.Groves.2000Data SourcePublication
Complete cDNA Template Probeshow
TGCGCGTCGCTCAGCGCTGCCCGCGGGAACCTCCGCTGCACCTCGGGGAGCGGCACGGGAAAACTCCTTCCCCCTCCTG
CGGCCGCCGCCCGGACCGGTTCTTTCTTTTACTCTTATTATTTTGAACTTCCTTTCCCCGAGCTGTGCCCGCCCGTCTG
CCACCCTGGCGCATCTCTTACCGGCCCCGGCCATGTACAGCATGCTGGAGACCGAGATCAAGACGCCGCAGCCCACGCC
GGGCAGCGCCGGGGGGAACCCGGCCCCGGGCGGCAACGGCAAAGGCGGCGGCGGGGCCGGCAGCGGAGCGGGTGCCGGG
TCGGACCAGGACCGGGTGAAGCGCCCCATGAACGCCTTCATGGTGTGGTCCCGGGGCCAGCGGCGGAAGATGGCCCAGG
AGAATCCCAAGATGCACAACTCGGAGATCAGCAAGCGCCTCGGGGCCGATTGGAAGCTGCTGAGCGATGCCGAGAAGCG
GCCCTTCATCGACGAGGCCAAGAGGCTGCGGGCCGTGCACATGAAGGAGTACCCGGATTACAAATACCGGCCCCGGAGG
AAGACCAAGACCTTGCTGAAGAAGGACAAATACTCGCTGCCGGGCAACCTGCTGGCCCCCGGAGGGGGCAACGCGGTGA
GCAGCCCCGTCGGGGTGGGCCAGAGGATTGACACTTACGCCCATATGAACGGTTGGACCAACGGGGCTTACTCCCTGAT
GCAAGACCAGCTGGGTTACGGGCAGCACCCGGGCATGAACAGCCCGCAGCTGCAGCAGATGCACCGCTACGACATGCCG
GGCCTGCAGTACAGCCCCATGATGTCCACGGCGCAGACCTACATGAACGCCGCCTCCACCTACAGCATGTCCCCCGCCG
CCTACGGCCAGCAGCCCTCCACGGCCATGAGCCTGGGCTCCATGGGCTCGGTGGTGAAGTCCGAGCCCAGCTCGCCTCC
GCCGGCCATCACCTCGCACTCGCAGAGGGCCTGCCTGGGAGACCTGCGGGATATGATCAGCATGTACCTGCCCCCGGGG
GGCGACGCCACAGACCCTTCGGCCCTGCAGGGCAGCAGGTTGCACAGTGTGCACCAGCACTACCAGAGTGCCGGGACTG
CCGTGAACGGCACCGTACCACTAACTCACATATAAACGAACTGGCCTCCTCCGGACGGCTCCTCATCGCAACCCCAGCG
CCGGGACGTGCGGCTCAGCAGACTCGATACTAACTTGGGAGAAATTTTAAACAGAAAATCCGTTCGTTGTCTTCATTTT
CTTTTTTCTTTTGTACAAAAAAAAAAACGATTTGGGCAATCTGTTCTTTTAACAGAGCGCAACCGCCTCCTAAAGCCCC
GCGAAGTTCTTAAGCCACGGCGACTCTCCCGGTCTCCGCGGGGTTGGGCGTAGTTTTGTTCGCTTCCGAGTCTTAAAGA
TGGTGCATCGCCCCGTTCCATTTTAGCGTTGCAATGACAAAACGAAAAACCGACCCGGCGGGCGTTGTTTTCAAACTCA
GTCGTTCCGTTGTTTACATTTTCGTTGTGGTTACTGAAAGTGTTGTTCTTCCCACCTTGCCGAGCGCCGCTCGGTTCGT
GTCCGCAATTCGTAGAGTTTTTAACTTTAGGGTTTTGTTCCTACGGAAAGGGGGCGGTGGGAGAGAGCTGTGCGGGTCG
CAAACCCTTTCTTTTATTTATAGCAAGTTGTGTGTCTGGGTTTTTCTTAAGCTGTAAACTTATGTAAATCGGTTTGTGA
ATTTTACTGTGAACGATGTTTTGACATATCAGACCAAGAAAAGTTTTAATTTTTTGTTTGTTTGTTTTGTTTACCGGAT
TTCTTCC
CitationGroves AK, Bronner-Fraser M. Competence, specification and commitment in otic placode induction. Development. 2000 Aug;127(16):3489-99.
CopyrightThis material is protected by copyright. The Company of Biologists' (publishers of Development) hold an Exclusive License obtained from the authors, who retain copyright.
CommentsUnable to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_204195.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 6
Ear/Otic Placcode
Forebrain
 
7-12
stage 9
stage 11
Ear/Otic Placcode
Forebrain
Hindbrain
Neural Plate/Tube
Spinal Cord
 
13
stage 13
Ear/Otic Placcode
 

Entry 10

GEISHA IdSOX3.Abello.2010Data SourcePublication
Complete cDNA Template Probeshow
TGCGCGTCGCTCAGCGCTGCCCGCGGGAACCTCCGCTGCACCTCGGGGAGCGGCACGGGAAAACTCCTTCCCCCTCCTG
CGGCCGCCGCCCGGACCGGTTCTTTCTTTTACTCTTATTATTTTGAACTTCCTTTCCCCGAGCTGTGCCCGCCCGTCTG
CCACCCTGGCGCATCTCTTACCGGCCCCGGCCATGTACAGCATGCTGGAGACCGAGATCAAGACGCCGCAGCCCACGCC
GGGCAGCGCCGGGGGGAACCCGGCCCCGGGCGGCAACGGCAAAGGCGGCGGCGGGGCCGGCAGCGGAGCGGGTGCCGGG
TCGGACCAGGACCGGGTGAAGCGCCCCATGAACGCCTTCATGGTGTGGTCCCGGGGCCAGCGGCGGAAGATGGCCCAGG
AGAATCCCAAGATGCACAACTCGGAGATCAGCAAGCGCCTCGGGGCCGATTGGAAGCTGCTGAGCGATGCCGAGAAGCG
GCCCTTCATCGACGAGGCCAAGAGGCTGCGGGCCGTGCACATGAAGGAGTACCCGGATTACAAATACCGGCCCCGGAGG
AAGACCAAGACCTTGCTGAAGAAGGACAAATACTCGCTGCCGGGCAACCTGCTGGCCCCCGGAGGGGGCAACGCGGTGA
GCAGCCCCGTCGGGGTGGGCCAGAGGATTGACACTTACGCCCATATGAACGGTTGGACCAACGGGGCTTACTCCCTGAT
GCAAGACCAGCTGGGTTACGGGCAGCACCCGGGCATGAACAGCCCGCAGCTGCAGCAGATGCACCGCTACGACATGCCG
GGCCTGCAGTACAGCCCCATGATGTCCACGGCGCAGACCTACATGAACGCCGCCTCCACCTACAGCATGTCCCCCGCCG
CCTACGGCCAGCAGCCCTCCACGGCCATGAGCCTGGGCTCCATGGGCTCGGTGGTGAAGTCCGAGCCCAGCTCGCCTCC
GCCGGCCATCACCTCGCACTCGCAGAGGGCCTGCCTGGGAGACCTGCGGGATATGATCAGCATGTACCTGCCCCCGGGG
GGCGACGCCACAGACCCTTCGGCCCTGCAGGGCAGCAGGTTGCACAGTGTGCACCAGCACTACCAGAGTGCCGGGACTG
CCGTGAACGGCACCGTACCACTAACTCACATATAAACGAACTGGCCTCCTCCGGACGGCTCCTCATCGCAACCCCAGCG
CCGGGACGTGCGGCTCAGCAGACTCGATACTAACTTGGGAGAAATTTTAAACAGAAAATCCGTTCGTTGTCTTCATTTT
CTTTTTTCTTTTGTACAAAAAAAAAAACGATTTGGGCAATCTGTTCTTTTAACAGAGCGCAACCGCCTCCTAAAGCCCC
GCGAAGTTCTTAAGCCACGGCGACTCTCCCGGTCTCCGCGGGGTTGGGCGTAGTTTTGTTCGCTTCCGAGTCTTAAAGA
TGGTGCATCGCCCCGTTCCATTTTAGCGTTGCAATGACAAAACGAAAAACCGACCCGGCGGGCGTTGTTTTCAAACTCA
GTCGTTCCGTTGTTTACATTTTCGTTGTGGTTACTGAAAGTGTTGTTCTTCCCACCTTGCCGAGCGCCGCTCGGTTCGT
GTCCGCAATTCGTAGAGTTTTTAACTTTAGGGTTTTGTTCCTACGGAAAGGGGGCGGTGGGAGAGAGCTGTGCGGGTCG
CAAACCCTTTCTTTTATTTATAGCAAGTTGTGTGTCTGGGTTTTTCTTAAGCTGTAAACTTATGTAAATCGGTTTGTGA
ATTTTACTGTGAACGATGTTTTGACATATCAGACCAAGAAAAGTTTTAATTTTTTGTTTGTTTGTTTTGTTTACCGGAT
TTCTTCC
CitationAbelló G, Khatri S, Radosevic M, Scotting PJ, Giráldez F, Alsina B., Independent regulation of Sox3 and Lmx1b by FGF and BMP signaling influences the neurogenic and non-neurogenic domains in the chick otic placode. Dev Biol. 2010 Mar 1;339(1):166-78. Epub 2010 Jan 4.
CopyrightCopyright © 2009 Elsevier Inc. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. The sequence below was obtained from NCBI (acc # NM_204195.1)
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-10
stage 8
stage 8
stage 8
stage 9
stage 9
stage 9
stage 9
stage 9
stage 10
stage 10
stage 10
Head Mesenchyme
Neural Plate/Tube
Rhombomeres
HH stage 9+ to 10-
double labeled with Krox20

Entry 11

GEISHA IdSOX3.Acloque.2011Data SourcePublication
Complete cDNA Template Probeshow
TGCGCGTCGCTCAGCGCTGCCCGCGGGAACCTCCGCTGCACCTCGGGGAGCGGCACGGGAAAACTCCTTCCCCCTCCTG
CGGCCGCCGCCCGGACCGGTTCTTTCTTTTACTCTTATTATTTTGAACTTCCTTTCCCCGAGCTGTGCCCGCCCGTCTG
CCACCCTGGCGCATCTCTTACCGGCCCCGGCCATGTACAGCATGCTGGAGACCGAGATCAAGACGCCGCAGCCCACGCC
GGGCAGCGCCGGGGGGAACCCGGCCCCGGGCGGCAACGGCAAAGGCGGCGGCGGGGCCGGCAGCGGAGCGGGTGCCGGG
TCGGACCAGGACCGGGTGAAGCGCCCCATGAACGCCTTCATGGTGTGGTCCCGGGGCCAGCGGCGGAAGATGGCCCAGG
AGAATCCCAAGATGCACAACTCGGAGATCAGCAAGCGCCTCGGGGCCGATTGGAAGCTGCTGAGCGATGCCGAGAAGCG
GCCCTTCATCGACGAGGCCAAGAGGCTGCGGGCCGTGCACATGAAGGAGTACCCGGATTACAAATACCGGCCCCGGAGG
AAGACCAAGACCTTGCTGAAGAAGGACAAATACTCGCTGCCGGGCAACCTGCTGGCCCCCGGAGGGGGCAACGCGGTGA
GCAGCCCCGTCGGGGTGGGCCAGAGGATTGACACTTACGCCCATATGAACGGTTGGACCAACGGGGCTTACTCCCTGAT
GCAAGACCAGCTGGGTTACGGGCAGCACCCGGGCATGAACAGCCCGCAGCTGCAGCAGATGCACCGCTACGACATGCCG
GGCCTGCAGTACAGCCCCATGATGTCCACGGCGCAGACCTACATGAACGCCGCCTCCACCTACAGCATGTCCCCCGCCG
CCTACGGCCAGCAGCCCTCCACGGCCATGAGCCTGGGCTCCATGGGCTCGGTGGTGAAGTCCGAGCCCAGCTCGCCTCC
GCCGGCCATCACCTCGCACTCGCAGAGGGCCTGCCTGGGAGACCTGCGGGATATGATCAGCATGTACCTGCCCCCGGGG
GGCGACGCCACAGACCCTTCGGCCCTGCAGGGCAGCAGGTTGCACAGTGTGCACCAGCACTACCAGAGTGCCGGGACTG
CCGTGAACGGCACCGTACCACTAACTCACATATAAACGAACTGGCCTCCTCCGGACGGCTCCTCATCGCAACCCCAGCG
CCGGGACGTGCGGCTCAGCAGACTCGATACTAACTTGGGAGAAATTTTAAACAGAAAATCCGTTCGTTGTCTTCATTTT
CTTTTTTCTTTTGTACAAAAAAAAAAACGATTTGGGCAATCTGTTCTTTTAACAGAGCGCAACCGCCTCCTAAAGCCCC
GCGAAGTTCTTAAGCCACGGCGACTCTCCCGGTCTCCGCGGGGTTGGGCGTAGTTTTGTTCGCTTCCGAGTCTTAAAGA
TGGTGCATCGCCCCGTTCCATTTTAGCGTTGCAATGACAAAACGAAAAACCGACCCGGCGGGCGTTGTTTTCAAACTCA
GTCGTTCCGTTGTTTACATTTTCGTTGTGGTTACTGAAAGTGTTGTTCTTCCCACCTTGCCGAGCGCCGCTCGGTTCGT
GTCCGCAATTCGTAGAGTTTTTAACTTTAGGGTTTTGTTCCTACGGAAAGGGGGCGGTGGGAGAGAGCTGTGCGGGTCG
CAAACCCTTTCTTTTATTTATAGCAAGTTGTGTGTCTGGGTTTTTCTTAAGCTGTAAACTTATGTAAATCGGTTTGTGA
ATTTTACTGTGAACGATGTTTTGACATATCAGACCAAGAAAAGTTTTAATTTTTTGTTTGTTTGTTTTGTTTACCGGAT
TTCTTCC
CitationHervé Acloque, Oscar H. Ocaña, Ander Matheu, Karine Rizzoti, Clare Wise, Robin Lovell-Badge, M. Angela Nieto Reciprocal Repression between Sox3 and Snail Transcription Factors Defines Embryonic Territories at Gastrulation. Dev Cell. 2011 September 13; 21(3): 546–558.
CopyrightCopyright © 2011 Published by Elsevier Inc.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_204195.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
X-XIV
stage XIV
Area Pellucida
(14)
Eyal-Giladi stage XIV
1-3
stage 2
stage 3
stage 3
Epiblast
 
4
stage 4
stage 4
Epiblast
 

Entry 12

GEISHA IdSOX3.Qiao.2012Data SourcePublication
Complete cDNA Template Probeshow
TGCGCGTCGCTCAGCGCTGCCCGCGGGAACCTCCGCTGCACCTCGGGGAGCGGCACGGGAAAACTCCTTCCCCCTCCTG
CGGCCGCCGCCCGGACCGGTTCTTTCTTTTACTCTTATTATTTTGAACTTCCTTTCCCCGAGCTGTGCCCGCCCGTCTG
CCACCCTGGCGCATCTCTTACCGGCCCCGGCCATGTACAGCATGCTGGAGACCGAGATCAAGACGCCGCAGCCCACGCC
GGGCAGCGCCGGGGGGAACCCGGCCCCGGGCGGCAACGGCAAAGGCGGCGGCGGGGCCGGCAGCGGAGCGGGTGCCGGG
TCGGACCAGGACCGGGTGAAGCGCCCCATGAACGCCTTCATGGTGTGGTCCCGGGGCCAGCGGCGGAAGATGGCCCAGG
AGAATCCCAAGATGCACAACTCGGAGATCAGCAAGCGCCTCGGGGCCGATTGGAAGCTGCTGAGCGATGCCGAGAAGCG
GCCCTTCATCGACGAGGCCAAGAGGCTGCGGGCCGTGCACATGAAGGAGTACCCGGATTACAAATACCGGCCCCGGAGG
AAGACCAAGACCTTGCTGAAGAAGGACAAATACTCGCTGCCGGGCAACCTGCTGGCCCCCGGAGGGGGCAACGCGGTGA
GCAGCCCCGTCGGGGTGGGCCAGAGGATTGACACTTACGCCCATATGAACGGTTGGACCAACGGGGCTTACTCCCTGAT
GCAAGACCAGCTGGGTTACGGGCAGCACCCGGGCATGAACAGCCCGCAGCTGCAGCAGATGCACCGCTACGACATGCCG
GGCCTGCAGTACAGCCCCATGATGTCCACGGCGCAGACCTACATGAACGCCGCCTCCACCTACAGCATGTCCCCCGCCG
CCTACGGCCAGCAGCCCTCCACGGCCATGAGCCTGGGCTCCATGGGCTCGGTGGTGAAGTCCGAGCCCAGCTCGCCTCC
GCCGGCCATCACCTCGCACTCGCAGAGGGCCTGCCTGGGAGACCTGCGGGATATGATCAGCATGTACCTGCCCCCGGGG
GGCGACGCCACAGACCCTTCGGCCCTGCAGGGCAGCAGGTTGCACAGTGTGCACCAGCACTACCAGAGTGCCGGGACTG
CCGTGAACGGCACCGTACCACTAACTCACATATAAACGAACTGGCCTCCTCCGGACGGCTCCTCATCGCAACCCCAGCG
CCGGGACGTGCGGCTCAGCAGACTCGATACTAACTTGGGAGAAATTTTAAACAGAAAATCCGTTCGTTGTCTTCATTTT
CTTTTTTCTTTTGTACAAAAAAAAAAACGATTTGGGCAATCTGTTCTTTTAACAGAGCGCAACCGCCTCCTAAAGCCCC
GCGAAGTTCTTAAGCCACGGCGACTCTCCCGGTCTCCGCGGGGTTGGGCGTAGTTTTGTTCGCTTCCGAGTCTTAAAGA
TGGTGCATCGCCCCGTTCCATTTTAGCGTTGCAATGACAAAACGAAAAACCGACCCGGCGGGCGTTGTTTTCAAACTCA
GTCGTTCCGTTGTTTACATTTTCGTTGTGGTTACTGAAAGTGTTGTTCTTCCCACCTTGCCGAGCGCCGCTCGGTTCGT
GTCCGCAATTCGTAGAGTTTTTAACTTTAGGGTTTTGTTCCTACGGAAAGGGGGCGGTGGGAGAGAGCTGTGCGGGTCG
CAAACCCTTTCTTTTATTTATAGCAAGTTGTGTGTCTGGGTTTTTCTTAAGCTGTAAACTTATGTAAATCGGTTTGTGA
ATTTTACTGTGAACGATGTTTTGACATATCAGACCAAGAAAAGTTTTAATTTTTTGTTTGTTTGTTTTGTTTACCGGAT
TTCTTCC
CitationQiao Y, Zhu Y, Sheng N, Chen J, Tao R, Zhu Q, Zhang T, Qian C, Jing N. AP2γ regulates neural and epidermal development downstream of the BMP pathway at early stages of ectodermal patterning. Cell Res. 2012 Nov;22(11):1546-61.
Copyright© 2012 Shanghai Institutes for Biological Sciences
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (Acc. # NM_204195.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 4
stage 4
stage 4
stage 5
stage 6
Ectoderm
Epiblast
Neural Plate/Tube
Stage HH4
Stage HH4+
Stage HH4-

Entry 13

GEISHA IdSOX3.Christophorou.2009Data SourcePublication
Complete cDNA Template Probeshow
TGCGCGTCGCTCAGCGCTGCCCGCGGGAACCTCCGCTGCACCTCGGGGAGCGGCACGGGAAAACTCCTTCCCCCTCCTG
CGGCCGCCGCCCGGACCGGTTCTTTCTTTTACTCTTATTATTTTGAACTTCCTTTCCCCGAGCTGTGCCCGCCCGTCTG
CCACCCTGGCGCATCTCTTACCGGCCCCGGCCATGTACAGCATGCTGGAGACCGAGATCAAGACGCCGCAGCCCACGCC
GGGCAGCGCCGGGGGGAACCCGGCCCCGGGCGGCAACGGCAAAGGCGGCGGCGGGGCCGGCAGCGGAGCGGGTGCCGGG
TCGGACCAGGACCGGGTGAAGCGCCCCATGAACGCCTTCATGGTGTGGTCCCGGGGCCAGCGGCGGAAGATGGCCCAGG
AGAATCCCAAGATGCACAACTCGGAGATCAGCAAGCGCCTCGGGGCCGATTGGAAGCTGCTGAGCGATGCCGAGAAGCG
GCCCTTCATCGACGAGGCCAAGAGGCTGCGGGCCGTGCACATGAAGGAGTACCCGGATTACAAATACCGGCCCCGGAGG
AAGACCAAGACCTTGCTGAAGAAGGACAAATACTCGCTGCCGGGCAACCTGCTGGCCCCCGGAGGGGGCAACGCGGTGA
GCAGCCCCGTCGGGGTGGGCCAGAGGATTGACACTTACGCCCATATGAACGGTTGGACCAACGGGGCTTACTCCCTGAT
GCAAGACCAGCTGGGTTACGGGCAGCACCCGGGCATGAACAGCCCGCAGCTGCAGCAGATGCACCGCTACGACATGCCG
GGCCTGCAGTACAGCCCCATGATGTCCACGGCGCAGACCTACATGAACGCCGCCTCCACCTACAGCATGTCCCCCGCCG
CCTACGGCCAGCAGCCCTCCACGGCCATGAGCCTGGGCTCCATGGGCTCGGTGGTGAAGTCCGAGCCCAGCTCGCCTCC
GCCGGCCATCACCTCGCACTCGCAGAGGGCCTGCCTGGGAGACCTGCGGGATATGATCAGCATGTACCTGCCCCCGGGG
GGCGACGCCACAGACCCTTCGGCCCTGCAGGGCAGCAGGTTGCACAGTGTGCACCAGCACTACCAGAGTGCCGGGACTG
CCGTGAACGGCACCGTACCACTAACTCACATATAAACGAACTGGCCTCCTCCGGACGGCTCCTCATCGCAACCCCAGCG
CCGGGACGTGCGGCTCAGCAGACTCGATACTAACTTGGGAGAAATTTTAAACAGAAAATCCGTTCGTTGTCTTCATTTT
CTTTTTTCTTTTGTACAAAAAAAAAAACGATTTGGGCAATCTGTTCTTTTAACAGAGCGCAACCGCCTCCTAAAGCCCC
GCGAAGTTCTTAAGCCACGGCGACTCTCCCGGTCTCCGCGGGGTTGGGCGTAGTTTTGTTCGCTTCCGAGTCTTAAAGA
TGGTGCATCGCCCCGTTCCATTTTAGCGTTGCAATGACAAAACGAAAAACCGACCCGGCGGGCGTTGTTTTCAAACTCA
GTCGTTCCGTTGTTTACATTTTCGTTGTGGTTACTGAAAGTGTTGTTCTTCCCACCTTGCCGAGCGCCGCTCGGTTCGT
GTCCGCAATTCGTAGAGTTTTTAACTTTAGGGTTTTGTTCCTACGGAAAGGGGGCGGTGGGAGAGAGCTGTGCGGGTCG
CAAACCCTTTCTTTTATTTATAGCAAGTTGTGTGTCTGGGTTTTTCTTAAGCTGTAAACTTATGTAAATCGGTTTGTGA
ATTTTACTGTGAACGATGTTTTGACATATCAGACCAAGAAAAGTTTTAATTTTTTGTTTGTTTGTTTTGTTTACCGGAT
TTCTTCC
CitationChristophorou NA, Bailey AP, Hanson S, Streit A. Activation of Six1 target genes is required for sensory placode formation. Dev Biol. 2009 Dec 15;336(2):327-36. doi: 10.1016/j.ydbio.2009.09.025. Epub 2009 Sep 23.
CopyrightCopyright © 2013 Elsevier B.V. All rights reserved.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI AB011803.1
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4
stage 4
stage 4
Neural Plate/Tube
 

Entry 14

GEISHA IdSox3.Ishii.2001Data SourcePublication
Complete cDNA Template Probeshow
TGCGCGTCGCTCAGCGCTGCCCGCGGGAACCTCCGCTGCACCTCGGGGAGCGGCACGGGAAAACTCCTTCCCCCTCCTG
CGGCCGCCGCCCGGACCGGTTCTTTCTTTTACTCTTATTATTTTGAACTTCCTTTCCCCGAGCTGTGCCCGCCCGTCTG
CCACCCTGGCGCATCTCTTACCGGCCCCGGCCATGTACAGCATGCTGGAGACCGAGATCAAGACGCCGCAGCCCACGCC
GGGCAGCGCCGGGGGGAACCCGGCCCCGGGCGGCAACGGCAAAGGCGGCGGCGGGGCCGGCAGCGGAGCGGGTGCCGGG
TCGGACCAGGACCGGGTGAAGCGCCCCATGAACGCCTTCATGGTGTGGTCCCGGGGCCAGCGGCGGAAGATGGCCCAGG
AGAATCCCAAGATGCACAACTCGGAGATCAGCAAGCGCCTCGGGGCCGATTGGAAGCTGCTGAGCGATGCCGAGAAGCG
GCCCTTCATCGACGAGGCCAAGAGGCTGCGGGCCGTGCACATGAAGGAGTACCCGGATTACAAATACCGGCCCCGGAGG
AAGACCAAGACCTTGCTGAAGAAGGACAAATACTCGCTGCCGGGCAACCTGCTGGCCCCCGGAGGGGGCAACGCGGTGA
GCAGCCCCGTCGGGGTGGGCCAGAGGATTGACACTTACGCCCATATGAACGGTTGGACCAACGGGGCTTACTCCCTGAT
GCAAGACCAGCTGGGTTACGGGCAGCACCCGGGCATGAACAGCCCGCAGCTGCAGCAGATGCACCGCTACGACATGCCG
GGCCTGCAGTACAGCCCCATGATGTCCACGGCGCAGACCTACATGAACGCCGCCTCCACCTACAGCATGTCCCCCGCCG
CCTACGGCCAGCAGCCCTCCACGGCCATGAGCCTGGGCTCCATGGGCTCGGTGGTGAAGTCCGAGCCCAGCTCGCCTCC
GCCGGCCATCACCTCGCACTCGCAGAGGGCCTGCCTGGGAGACCTGCGGGATATGATCAGCATGTACCTGCCCCCGGGG
GGCGACGCCACAGACCCTTCGGCCCTGCAGGGCAGCAGGTTGCACAGTGTGCACCAGCACTACCAGAGTGCCGGGACTG
CCGTGAACGGCACCGTACCACTAACTCACATATAAACGAACTGGCCTCCTCCGGACGGCTCCTCATCGCAACCCCAGCG
CCGGGACGTGCGGCTCAGCAGACTCGATACTAACTTGGGAGAAATTTTAAACAGAAAATCCGTTCGTTGTCTTCATTTT
CTTTTTTCTTTTGTACAAAAAAAAAAACGATTTGGGCAATCTGTTCTTTTAACAGAGCGCAACCGCCTCCTAAAGCCCC
GCGAAGTTCTTAAGCCACGGCGACTCTCCCGGTCTCCGCGGGGTTGGGCGTAGTTTTGTTCGCTTCCGAGTCTTAAAGA
TGGTGCATCGCCCCGTTCCATTTTAGCGTTGCAATGACAAAACGAAAAACCGACCCGGCGGGCGTTGTTTTCAAACTCA
GTCGTTCCGTTGTTTACATTTTCGTTGTGGTTACTGAAAGTGTTGTTCTTCCCACCTTGCCGAGCGCCGCTCGGTTCGT
GTCCGCAATTCGTAGAGTTTTTAACTTTAGGGTTTTGTTCCTACGGAAAGGGGGCGGTGGGAGAGAGCTGTGCGGGTCG
CAAACCCTTTCTTTTATTTATAGCAAGTTGTGTGTCTGGGTTTTTCTTAAGCTGTAAACTTATGTAAATCGGTTTGTGA
ATTTTACTGTGAACGATGTTTTGACATATCAGACCAAGAAAAGTTTTAATTTTTTGTTTGTTTGTTTTGTTTACCGGAT
TTCTTCC
CitationIshii Y, Abu-Elmagd M, Scotting PJ. Sox3 expression defines a common primordium for the epibranchial placodes in chick. Dev Biol. 2001 Aug 15;236(2):344-53.
CopyrightCopyright © 2001 Academic Press.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence was obtained from NCBI (NM_204195.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 9
stage 10
stage 11
stage 12
stage 12
Ectoderm
geniculate placode
unsegmented placodal primordium, otic-geniculate, Geniculate placode, otic vesicle
13-18
stage 13
stage 13
stage 13
stage 13
stage 14
stage 16
stage 17
stage 17
stage 17
stage 18
Ectoderm
Unlabeled
ectoderm between the petrosal placode and the UPP17
geniculate placode
geniculate placode; petrosal placode
petrosal placode
19-24
stage 19
stage 21
stage 21
Ectoderm
epibranchial placodes
geniculate placode; petrosal placode; first nodose placode; second nodose placode
31-44
stage 44
stage 44
stage 44
stage 44
stage 44
  

Entry 15

GEISHA IdSox3.Vieceli.2013Data SourcePublication
Complete cDNA Template Probeshow
AAGAAGGACAAATACTCGCTGCCGGGCAACCTGCTGGCCCCCGGAGGGGGCAACGCGGTGAGCAGCCCCGTCGGGGTGG
GCCAGAGGATTGACACTTACGCCCATATGAACGGTTGGACCAACGGGGCTTACTCCCTGATGCAAGACCAGCTGGGTTA
CGGGCAGCACCCGGGCATGAACAGCCCGCAGCTGCAGCAGATGCACCGCTACGACATGCCGGGCCTGCAGTACAGCCCC
ATGATGTCCACGGCGCAGACCTACATGAACGCCGCCTCCACCTACAGCATGTCCCCCGCCGCCTACGGCCAGCAGCCCT
CCACGGCCATGAGCCTGGGCTCCATGGGCTCGGTGGTGAAGTCCGAGCCCAGCTCGCCTCCGCCGGCCATCACCTCGCA
CTCGCAGAGGGCCTGCCTGGGAGACCTGCGGGATATGATCAGCATGTACCTGCCCCCGGGGGGCGACGCCACAGACCCT
TCGGCCCTGCAGGGCAGCAGGTTGCACAGTGTGCACCAGCACTACCAGAGTGCCGGGACTGCCGTGAACGGCACCGTAC
CACTAACTCACATATAAACGAACTGGCCTCCTCCGGACGGCTCCTCATCGCAACCCCAGCGCCGGGACGTGCGGCTCAG
CAGACTCGATACTAACTTGGGAGAAATTTTAAACAGAAAATCCGTTCGTTGTCTTCATTTTCTTTTTTCTTTTGTACAA
AAAAAAAAACGATTTGGGCAATCTGTTCTTTTAACAGAGCGCAACCGCCTCCTAAAGCCCCGCGAAGTTCTTAAGCCAC
GGCGACTCT
CitationVieceli FM, Simões-Costa M, Turri JA, Kanno T, Bronner M, Yan CY. The transcription factor chicken Scratch2 is expressed in a subset of early postmitotic neural progenitors. Gene Expr Patterns. 2013 Jun-Jul;13(5-6):189-96. DOI: 10.1016/j.gep.2013.03.004.
CopyrightCopyright © 2013 Elsevier B.V.
CommentsAuthors indicated the probe for Sox3 was synthesized from 572-1370 nucleotides of NCBI sequence NM_204195. Above sequence was extracted from NCBI (NM_204195.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25
stage 25
Spinal Cord
 
all
 
  

Entry 16

GEISHA IdSOX3.Freter.2012Data SourcePublication
Complete cDNA Template Probeshow
TGCGCGTCGCTCAGCGCTGCCCGCGGGAACCTCCGCTGCACCTCGGGGAGCGGCACGGGAAAACTCCTTCCCCCTCCTG
CGGCCGCCGCCCGGACCGGTTCTTTCTTTTACTCTTATTATTTTGAACTTCCTTTCCCCGAGCTGTGCCCGCCCGTCTG
CCACCCTGGCGCATCTCTTACCGGCCCCGGCCATGTACAGCATGCTGGAGACCGAGATCAAGACGCCGCAGCCCACGCC
GGGCAGCGCCGGGGGGAACCCGGCCCCGGGCGGCAACGGCAAAGGCGGCGGCGGGGCCGGCAGCGGAGCGGGTGCCGGG
TCGGACCAGGACCGGGTGAAGCGCCCCATGAACGCCTTCATGGTGTGGTCCCGGGGCCAGCGGCGGAAGATGGCCCAGG
AGAATCCCAAGATGCACAACTCGGAGATCAGCAAGCGCCTCGGGGCCGATTGGAAGCTGCTGAGCGATGCCGAGAAGCG
GCCCTTCATCGACGAGGCCAAGAGGCTGCGGGCCGTGCACATGAAGGAGTACCCGGATTACAAATACCGGCCCCGGAGG
AAGACCAAGACCTTGCTGAAGAAGGACAAATACTCGCTGCCGGGCAACCTGCTGGCCCCCGGAGGGGGCAACGCGGTGA
GCAGCCCCGTCGGGGTGGGCCAGAGGATTGACACTTACGCCCATATGAACGGTTGGACCAACGGGGCTTACTCCCTGAT
GCAAGACCAGCTGGGTTACGGGCAGCACCCGGGCATGAACAGCCCGCAGCTGCAGCAGATGCACCGCTACGACATGCCG
GGCCTGCAGTACAGCCCCATGATGTCCACGGCGCAGACCTACATGAACGCCGCCTCCACCTACAGCATGTCCCCCGCCG
CCTACGGCCAGCAGCCCTCCACGGCCATGAGCCTGGGCTCCATGGGCTCGGTGGTGAAGTCCGAGCCCAGCTCGCCTCC
GCCGGCCATCACCTCGCACTCGCAGAGGGCCTGCCTGGGAGACCTGCGGGATATGATCAGCATGTACCTGCCCCCGGGG
GGCGACGCCACAGACCCTTCGGCCCTGCAGGGCAGCAGGTTGCACAGTGTGCACCAGCACTACCAGAGTGCCGGGACTG
CCGTGAACGGCACCGTACCACTAACTCACATATAAACGAACTGGCCTCCTCCGGACGGCTCCTCATCGCAACCCCAGCG
CCGGGACGTGCGGCTCAGCAGACTCGATACTAACTTGGGAGAAATTTTAAACAGAAAATCCGTTCGTTGTCTTCATTTT
CTTTTTTCTTTTGTACAAAAAAAAAAACGATTTGGGCAATCTGTTCTTTTAACAGAGCGCAACCGCCTCCTAAAGCCCC
GCGAAGTTCTTAAGCCACGGCGACTCTCCCGGTCTCCGCGGGGTTGGGCGTAGTTTTGTTCGCTTCCGAGTCTTAAAGA
TGGTGCATCGCCCCGTTCCATTTTAGCGTTGCAATGACAAAACGAAAAACCGACCCGGCGGGCGTTGTTTTCAAACTCA
GTCGTTCCGTTGTTTACATTTTCGTTGTGGTTACTGAAAGTGTTGTTCTTCCCACCTTGCCGAGCGCCGCTCGGTTCGT
GTCCGCAATTCGTAGAGTTTTTAACTTTAGGGTTTTGTTCCTACGGAAAGGGGGCGGTGGGAGAGAGCTGTGCGGGTCG
CAAACCCTTTCTTTTATTTATAGCAAGTTGTGTGTCTGGGTTTTTCTTAAGCTGTAAACTTATGTAAATCGGTTTGTGA
ATTTTACTGTGAACGATGTTTTGACATATCAGACCAAGAAAAGTTTTAATTTTTTGTTTGTTTGTTTTGTTTACCGGAT
TTCTTCC
CitationFreter S, Muta Y, O'Neill P, Vassilev VS, Kuraku S, Ladher RK. Pax2 modulates proliferation during specification of the otic and epibranchial placodes. Dev Dyn. 2012 Nov;241(11):1716-28
CopyrightCopyright © 2012 Wiley Periodicals, Inc.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence was obtained from NCBI (NM_204195.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-11
stage 10
stage 11
Central Nervous System
Cranial Ganglia
Cranial Nerve
Cranial PNS
 
all
 
 
  

Entry 17

GEISHA IdSOX3.Uchikawa.2011Data SourcePublication
Complete cDNA Template Probeshow
ACGGTTGGACCAACGGGGCTTACTCCCTGATGCAAGACCAGCTGGGTTACGGGCAGCACCCGGGCATGAACAGCCCGCA
GCTGCAGCAGATGCACCGCTACGACATGCCGGGCCTGCAGTACAGCCCCATGATGTCCACGGCGCAGACCTACATGAAC
GCCGCCTCCACCTACAGCATGTCCCCCGCCGCCTACGGCCAGCAGCCCTCCACGGCCATGAGCCTGGGCTCCATGGGCT
CGGTGGTGAAGTCCGAGCCCAGCTCGCCTCCGCCGGCCATCACCTCGCACTCGCAGAGGGCCTGCCTGGGAGACCTGCG
GGATATGATCAGCATGTACCTGCCCCCGGGGGGCGACGCCACAGACCCTTCGGCCCTGCAGGGCAGCAGGTTGCACAGT
GTGCACCAGCACTACCAGAGTGCCGGGACTGCCGTGAACGGCACCGTACCACTAACTCACATATAAACGAACTGGCCTC
CTCCGGACGGCTCCTCATCGCAACCCCAGCGCCGGGACGTGCGGCTCAGCAGACTCGATACTAACTTGGGAGAAATTTT
AAACAGAAAATCCGTTCGTTGTCTTCATTTTCTTTTTTCTTTTGTACAAAAAAAAAAACGATTTGGGCAATCTGTTCTT
TTAACAGAGCGCAACCGCCTCCTAAAGCCCCGCGAAGTTCTTAAGCCACGGCGACTCTCCCGGTCTCCGCGGGGT
CitationUchikawa M,Yoshida M, Iwafuchi-Doi M, Matsuda K, Ishida Y, Takemoto T, Kondoh H. B1 and B2 Sox gene expression during neural plate development in chicken and mouse embryos: universal versus species-dependent features. Cell Growth Differ 2011 Aug;53(6):761-71.. null.
Copyright© 2011 Japanese Society of Developmental Biologists.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
1-3
stage 3
stage 3
 Prospective Neural Plate Epiblast
4-6
stage 4
stage 5
 Neural Ectoderm
7-12
stage 7
stage 8
stage 9
stage 10
stage 11
stage 12
Ear/Otic Placode
Neural Plate/Tube
 
13-18
stage 13
stage 13
Diencephalon
Ear/Otic Placode
Neural Plate/Tube
Rhombomeres
 
19
stage 19
stage 19
stage 19
  
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.3795

Mouse

EmageMGI:98365
EurexpressMGI:98365
MGI GXDMGI:98365

Frog

Xenbase484814

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-980526-333
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