GEISHA - A Chicken Embryo Gene Expression Database
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TAGLN3
transgelin 3

Gene
Official SymbolTAGLN3
Official Full Nametransgelin 3
CGNC ID11455
also known astransgelin-3|neuronal protein
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Sequence Information
Genomic
RNAXM_416634
PolypeptideXP_416634
Gene Expression
In Situ HybridizationGEISHA
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human29114ENSG00000144834MIM:607953
Mouse56370ENSMUSG00000022658All phenotypic alleles (2):Targeted, other(2) MGI:1926784
Xenopus
Zebrafish563096, 797861ENSDARG00000079805, ENSDARG00000058394ZDB-GENE-060531-53, ZDB-GENE-030131-4199ZFIN:ZDB-GENE-060531-53, ZFIN:ZDB-GENE-030131-4199
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene418420
Ensembl Gene
KEGGgga:418420

Entry 1

GEISHA IdTAGLN3.Ratie.2013Data SourcePublication
Complete cDNA Template Probeshow
AAATCAATACACTGTTCTTCAAACCACGATGCTGCAGCGGCAGCAGGGCTTTGTGGCAGCCTCTGTCTCTTAAATCCAT
TGACGCTTTTCAGGTTGCTGAGCTGGATATCCATCCCTGCATCTCTGCTGAAGAAGAACCCGACTGCATCTCAAAAGGA
TTCCCGGAGCTCCCATGTATAACCTTCTTCTTACTGGCAAGCATTAGAGATGGCTAACAGAGGACCAAGCTATGGCTTA
AGCCGAGAAGTTCAGGAAAAGATTGAACAGAAATATGACCCGGAATTAGAGTCCAGGCTGGCGAACTGGATTATCGTGC
AGTGCGAGGAACAGATCGAACCCCCTCCTCCTGGAAGGCAGCATTTCCAGACCTGGCTGATGGATGGAACGCTGTTATG
CAAGTTAATAAACAGTTTACATCCAAAGGGAAACGAACCCATTGCAAAGATCTCTGAATCAAAAATGGCTTTCAAGCAG
ATGGAACAAATTTCTCAGTTCTTAAAAGCTGCTGAAATCTACGGAGTAAGAACAACAGATATTTTCCAGACAGTGGATT
TATGGGAAGGGAAGGACATGGCAGCAGTGCAGAGAACCTTAATGGCTCTAGGCAGTTTGGCAGTCACCAAGGACGATGG
ATGCTACAAAGGGGATCCATCCTGGTTTCACAGGAAAGCACAGCAGAATCGACGAGGATTTTCAGAAGAGCAGCTTCGT
CAGGGACAGAACGTAATAGGCCTTCAGATGGGCAGCAACAAAGGAGCCTCACAGTCGGGTATGACGGGCTACGGGATGC
CAAGGCAGATTATCTAAAAGCACCTCTGTCTGTAGAGAAAACACTCCTGCAGCATGGTCTGTTCAACAACAACAACAGA
AAAAGAAAAAAAAAAAAAAAAAGCTCATTAGTTCTCTTTCTGCCTGGTTTTAATAGTTAGTGCTCTGAGGCGTGGGGTA
TTTTTGGTTTGGTTTGTTTTATTTGCAGCTACAAGAGTTCATCTAGGAACTTGGGTTTTCGTGGTGGTGTGTGTCAGTT
CACAGCACGTGCGCACTGCTGCCTCCTACTTTTCACTTCTGAACTATGCAAAGACAATTATTCTGTATTAATTTATTTG
CGAAGTGTTATCTTCCATATTTGTCTCACACTTCTCTTGTATCTCAACCAGTAACCTCGTTCTTCGATTCCGTGATGAC
ATTGTTTGATCTAAGAATAAAGACATTAAAACACA
CitationLeslie Ratié, Michelle Ware, Frédérique Barloy-Hubler, Hélène Romé, Isabelle Gicquel, Christèle Dubourg, Véronique David and Valérie Dupé. Novel genes upregulated when NOTCH signalling is disrupted during hypothalamic development. Neural Dev. 2013 Dec 23;8:25. doi: 10.1186/1749-8104-8-25.
Copyright© 2013 Ratié et al.; licensee BioMed Central Ltd.
CommentsThe sequence below was obtained from NCBI (acc # XM_416634.4) using the information provided in the publication as described in Ratie et al.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-15
stage 14
stage 14
stage 14
stage 15
stage 15
stage 15
stage 15
Cranial Ganglia
Hypothalamus
Mesencephalon
Peripheral Nervous System
Double Labeled ISH: Tagln3, blue; SHH, red
left embryo = control vehicle, DMSO; right embryo = DAPT-treated

Entry 2

GEISHA IdTAGLN3.Ware.2014Data SourcePublication
Complete cDNA Template Probeshow
AAATCAATACACTGTTCTTCAAACCACGATGCTGCAGCGGCAGCAGGGCTTTGTGGCAGCCTCTGTCTCTTAAATCCAT
TGACGCTTTTCAGGTTGCTGAGCTGGATATCCATCCCTGCATCTCTGCTGAAGAAGAACCCGACTGCATCTCAAAAGGA
TTCCCGGAGCTCCCATGTATAACCTTCTTCTTACTGGCAAGCATTAGAGATGGCTAACAGAGGACCAAGCTATGGCTTA
AGCCGAGAAGTTCAGGAAAAGATTGAACAGAAATATGACCCGGAATTAGAGTCCAGGCTGGCGAACTGGATTATCGTGC
AGTGCGAGGAACAGATCGAACCCCCTCCTCCTGGAAGGCAGCATTTCCAGACCTGGCTGATGGATGGAACGCTGTTATG
CAAGTTAATAAACAGTTTACATCCAAAGGGAAACGAACCCATTGCAAAGATCTCTGAATCAAAAATGGCTTTCAAGCAG
ATGGAACAAATTTCTCAGTTCTTAAAAGCTGCTGAAATCTACGGAGTAAGAACAACAGATATTTTCCAGACAGTGGATT
TATGGGAAGGGAAGGACATGGCAGCAGTGCAGAGAACCTTAATGGCTCTAGGCAGTTTGGCAGTCACCAAGGACGATGG
ATGCTACAAAGGGGATCCATCCTGGTTTCACAGGAAAGCACAGCAGAATCGACGAGGATTTTCAGAAGAGCAGCTTCGT
CAGGGACAGAACGTAATAGGCCTTCAGATGGGCAGCAACAAAGGAGCCTCACAGTCGGGTATGACGGGCTACGGGATGC
CAAGGCAGATTATCTAAAAGCACCTCTGTCTGTAGAGAAAACACTCCTGCAGCATGGTCTGTTCAACAACAACAACAGA
AAAAGAAAAAAAAAAAAAAAAAGCTCATTAGTTCTCTTTCTGCCTGGTTTTAATAGTTAGTGCTCTGAGGCGTGGGGTA
TTTTTGGTTTGGTTTGTTTTATTTGCAGCTACAAGAGTTCATCTAGGAACTTGGGTTTTCGTGGTGGTGTGTGTCAGTT
CACAGCACGTGCGCACTGCTGCCTCCTACTTTTCACTTCTGAACTATGCAAAGACAATTATTCTGTATTAATTTATTTG
CGAAGTGTTATCTTCCATATTTGTCTCACACTTCTCTTGTATCTCAACCAGTAACCTCGTTCTTCGATTCCGTGATGAC
ATTGTTTGATCTAAGAATAAAGACATTAAAACACA
CitationWare M, Hamdi-Rozé H and Dupé V (2014) Notch signaling and proneural genes work together to control the neural building blocks for the initial scaffold in the hypothalamus. Front Neuroanat. 2014 Dec 2;8:140. doi: 10.3389/fnana.2014.00140.
CopyrightCopyright © 2014 Ware, Hamdi-Rozé and Dupé
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. The sequence was obtained from NCBI (Acc. # XM_416634.5).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-15
stage 15
stage 15
Hypothalamus
Double labeled In Situ: Tagln3(Purple), Shh(Red)

Entry 3

GEISHA IdTAGLN3.Ratie.2014Data SourcePublication
Complete cDNA Template Probeshow
AAATCAATACACTGTTCTTCAAACCACGATGCTGCAGCGGCAGCAGGGCTTTGTGGCAGCCTCTGTCTCTTAAATCCAT
TGACGCTTTTCAGGTTGCTGAGCTGGATATCCATCCCTGCATCTCTGCTGAAGAAGAACCCGACTGCATCTCAAAAGGA
TTCCCGGAGCTCCCATGTATAACCTTCTTCTTACTGGCAAGCATTAGAGATGGCTAACAGAGGACCAAGCTATGGCTTA
AGCCGAGAAGTTCAGGAAAAGATTGAACAGAAATATGACCCGGAATTAGAGTCCAGGCTGGCGAACTGGATTATCGTGC
AGTGCGAGGAACAGATCGAACCCCCTCCTCCTGGAAGGCAGCATTTCCAGACCTGGCTGATGGATGGAACGCTGTTATG
CAAGTTAATAAACAGTTTACATCCAAAGGGAAACGAACCCATTGCAAAGATCTCTGAATCAAAAATGGCTTTCAAGCAG
ATGGAACAAATTTCTCAGTTCTTAAAAGCTGCTGAAATCTACGGAGTAAGAACAACAGATATTTTCCAGACAGTGGATT
TATGGGAAGGGAAGGACATGGCAGCAGTGCAGAGAACCTTAATGGCTCTAGGCAGTTTGGCAGTCACCAAGGACGATGG
ATGCTACAAAGGGGATCCATCCTGGTTTCACAGGAAAGCACAGCAGAATCGACGAGGATTTTCAGAAGAGCAGCTTCGT
CAGGGACAGAACGTAATAGGCCTTCAGATGGGCAGCAACAAAGGAGCCTCACAGTCGGGTATGACGGGCTACGGGATGC
CAAGGCAGATTATCTAAAAGCACCTCTGTCTGTAGAGAAAACACTCCTGCAGCATGGTCTGTTCAACAACAACAACAGA
AAAAGAAAAAAAAAAAAAAAAAGCTCATTAGTTCTCTTTCTGCCTGGTTTTAATAGTTAGTGCTCTGAGGCGTGGGGTA
TTTTTGGTTTGGTTTGTTTTATTTGCAGCTACAAGAGTTCATCTAGGAACTTGGGTTTTCGTGGTGGTGTGTGTCAGTT
CACAGCACGTGCGCACTGCTGCCTCCTACTTTTCACTTCTGAACTATGCAAAGACAATTATTCTGTATTAATTTATTTG
CGAAGTGTTATCTTCCATATTTGTCTCACACTTCTCTTGTATCTCAACCAGTAACCTCGTTCTTCGATTCCGTGATGAC
ATTGTTTGATCTAAGAATAAAGACATTAAAACACA
CitationRatié L, Ware M, Jagline H, David V and Dupé V (2014) Dynamic expression of Notch-dependent neurogenic markers in the chick embryonic nervous system. Front. Neuroanat. 8:158. doi: 10.3389/fnana.2014.00158
CopyrightCopyright © 2014 Ratié, Ware, Jagline, David and Dupé.
CommentsThe sequence below was obtained from NCBI (acc # XM_416634.4) using the information provided in the publication as described in Ratie et al.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 10
stage 10
stage 12
Neural Plate/Tube
Rhombomeres
 
13-18
stage 14
stage 14
stage 14
stage 15
stage 16
stage 16
stage 16
stage 17
stage 17
stage 17
stage 18
stage 18
stage 18
stage 18
Cranial PNS
Hypothalamus
Mesencephalon
Peripheral Nervous System
Rhombomeres
Spinal Cord
Double labeled with HuC/D antibody (brown) and mRNA Probe (blue)
control - shows normal expression
19-22
stage 22
stage 22
stage 22
stage 22
stage 22
stage 22
Cranial PNS
Peripheral Nervous System
Rhombomeres
Spinal Cord
Spinal Ganglia and Nerves
Double labeled with HuC/D antibody (brown) and mRNA Probe (blue)

Mouse

EmageMGI:1926784
MGI GXDMGI:1926784

Frog

Xenbase

Fruit Fly

BDGP

Zebra Finch

ZEBrATAGLN3

Zebrafish

ZFINZDB-GENE-060531-53, ZDB-GENE-030131-4199
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