Geisha

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A chicken embryo gene expression database

	Anatomical Location
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	Gene Name
	GEISHA ID
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TBR1
T-box, brain, 1

Gene

Official Symbol	TBR1
Official Full Name	T-box, brain, 1
CGNC ID	53540
also known as	T-box brain protein 1
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI

Sequence Information

Genomic
RNA	XM_003641638
Polypeptide	XP_003641686

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human
Mouse
Xenopus
Zebrafish

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	429029
Ensembl Gene
KEGG	gga:429029

Entry 1

GEISHA Id	TBR1.Abellan.2009	Data Source	Publication
Complete cDNA Template Probe	show CTGGTAGCGAGCAGCCCTCAGCTCCAGGGACGGAAGGGTTATTGCTGCGGTGCAGAGCGATGCAGCTGGAGCATTGTCT TTCTCCCTCTATCATGCTCTCCAAGAAATTTCTCAATGTGAGCAGCAGTTACCCACACGCAGGCGGATCCGAGCTTGCC TTGCATGATCATCCCATTATCTCGACCACTGACAACCTGGAGAGAAGTTCACCTTTGAAAAAAATTACCAGGGGGATGA CGAATCAGTCAGATACAGACAATTTTCCCGACTCCAAGGACACACCAGGGGACGTCCAGAGAAATAAACTCTCTCCCGT CTTGGACGGGGTCTCCGAGCTTCGTCACAGTTTCGATGGATCTGCCGCAGATCGCTATCTGCTCTCTCAGTCCAGCCAG CCCCAGTCTGCTGCCTCCGCGCCCAGTGCCATGTTCCCCTACCCCGGCCAGCACGGACCCGCTCACCCGGCCTTCTCCA TCGCCAGCCCCAGCCGCTACATGGCTCACCACCCCGTCATCACCAACGGCGCCTATAACAGCCTCCTGTCCAACTCCTC GCCGCAGGGCTACCCGGCGCCGGGCTACCCCTACCCCCAGCAGTACGGCCATTCCTACCAGGGCGCCCCGTTCTACCAG TTCTCCTCCGCCCAGCCGGGGCTGGTGCCGGGCAAGGCGCAGGTCTACCTGTGCAACAGGCCGCTCTGGCTGAAATTCC ACCGGCACCAGACGGAGATGATCATCACCAAGCAGGGCAGGTAAGCCGCCGCCGCAGCCGCGCGGAGCCGCCGCGGGAG CCGCCCGCCGCCACCGCCCCGGGGGAGCCGCCGGGACCCGGGCAGCCCCGCGCCCGTCCCCACGCGCAGCGCTGCGCCC CGGGCACGGACCTGCGCCGGGATTCGATTCCCCTCTCGCTGCCGGGAGCTGCGAGGATGGCACAAAAGGACGGCTCCTC CGCGGGCGCGCTAAATCTTAGCGTTCCCTCTGCGACGTCTGCGGGCCCGCCGCCGCGTTATCTCCGCGCCTTAGCGGCG ATCCGACCGCCGGAGCGCGGCTCGGTCCCGTCTGAACGCCGCGGGCGGCAGCGGGGCGGACGTTCCCGCTCTCACGCCG CGCTCTGCTCCCCTTCCCCAGATCACGCAGCTGAAAATCGACCACAACCCCTTCGCCAAAGGCTTCCGGGACAACTACG ACACGATCTACACGGGCTGCGACATGGACCGGCTGACGCCTTCCCCCAACGACTCGCCCCGCTCGCAGATCGTGCCCGG GGCCCGCTACGCCATGGCCGGCTCCTTCCTCCAGGACCAGTTCGTGAGTAACTACGCCAAGTCCCGCTTCCACCCCGGG GCAGGAGCCGGCCCGGGACCCGGCGCCGACCGCAGCGTGCCCCACACCAACGGGCTGCTCTCCCCACAGCAAGCCGAGG ACCCGGGGGCCCCCTCGCCGCAGCGCTGGTTCGTCGCCCCCGCCAACAACCGCCTCGACTTCGCCGCCTCCGCCTACGA CACGGCCACCGACTTCGCCGGCAACGCGGCCACGCTGCTCTCCTACGCGGCGGCCGGCGTCAAGGCGCTGCCTCTGCAG GCGGCCGGCTGCGCGGGGCGGCCGCTGGGCTACTACGCCGACCCGTCGGGCTGGGGGGCCCGCAGCCCCCCGCAGTACT GCAGCAAGTCGGGCTCCGTGCTCTCCTGCTGGCCCAACAGCGCGGCGGCGGCGCGCATGGCGGCCGGCAACCCCTACCT GGGGGAGGAGGCGGAGAGCCTGGCTCCCGAGCGCTCCCCTCTGCCGGGCGCCGAGGACTCCAAGCCCAAAGATTTGTCC GACTCTAGCTGGATCGAGACGCCGTCGTCCATTAAGTCCATCGATTCCACCGATTCTGGGATTTACGAGCAGGCCAAAA GGAGGCGGATCTCTCCCTCGGACACCCCGGTGTCCGAGAGCTCCTCGCCCCTCAAGAGCGAGGTTCTCACCCAGCGGGA CTGCGATAAGACCTGCGCCAAGGACATCGGCTACTACGGCTTCTATTCGCACAGCTAG
Citation	Abellán A, Legaz I, Vernier B, Rétaux S, Medina L. Olfactory and amygdalar structures of the chicken ventral pallium based on the combinatorial expression patterns of LIM and other developmental regulatory genes. J Comp Neurol. 2009 Sep 20;516(3):166-86.
Copyright	Copyright © 2009 Wiley-Liss, Inc.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # XM_003641638.1).

Stage

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Comments (click to highlight)

31-44

stage 44

frontal section

Entry 2

GEISHA Id	TBR1.Alonso.2020	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show GGGCAGCGCGGGGCCGCGGGGCTGCGTTCCAGCCGCGGTCGAAAAAGCGCATAAATGCGGGAAAGGTCACGGAATAACG AGCTCTCACAGCAAACACGCTCTTCCCTTCCCCCTTCGCCATCCTTCTATCTCACAATAAAATCATCTCCTTCAATTTG CCATGATCGTCGCGACCGGGAGCCAGGTGATTATCCTAATTAATGTCTATCTAATTAAATTACTGTCAGCGGTTAACCA ATGGCAGGAGCCGTTTCATCCTCTCCACAAGCAGCGAGATCAAAAGTGAGTCTTTCCTGATTGCTGCATAGTGTCAATT GGCCAATCTCTTCTCCCAGGGAAGAAAAAAAAAAAAAAGAAAAAAAAAAAAAAGTAAATCAAACGTTTGGGAAGCATTT GGTGGATGAAGTGCTTTCTGCCTACCGAGGGTCCCAGGATGTCTCGCTTCTGGTAGCGAGCAGCCCTCAGCTCCAGGGA CGGAAGGGTTATTGCTGCGGTGCAGAGCGATGCAGCTGGAGCATTGTCTTTCTCCCTCTATCATGCTCTCCAAGAAATT TCTCAATGTGAGCAGCAGTTACCCACACGCAGGCGGATCCGAGCTTGCCTTGCATGATCATCCCATTATCTCGACCACT GACAACCTGGAGAGAAGTTCACCTTTGAAAAAAATTACCAGGGGGATGACGAATCAGTCAGATACAGACAATTTTCCCG ACTCCAAGGACACACCAGGGGACGTCCAGAGAAATAAACTCTCTCCCGTCTTGGACGGGGTCTCCGAGCTTCGTCACAG TTTCGATGGATCTGCCGCAGATCGCTATCTGCTCTCTCAGTCCAGCCAGCCCCAGTCTGCTGCCTCCGCGCCCAGTGCC ATGTTCCCCTACCCCGGCCAGCACGGACCCGCTCACCCGGCCTTCTCCATCGCCAGCCCCAGCCGCTACATGGCTCACC ACCCCGTCATCACCAACGGCGCCTATAACAGCCTCCTGTCCAACTCCTCGCCGCAGGGCTACCCGGCGCCGGGCTACCC CTACCCCCAGCAGTACGGCCATTCCTACCAGGGCGCCCCGTTCTACCAGTTCTCCTCCGCCCAGCCGGGGCTGGTGCCG GGCAAGGCGCAGGTCTACCTGTGCAACAGGCCGCTCTGGCTGAAATTCCACCGGCACCAGACGGAGATGATCATCACCA AGCAGGGCAGGCGCATGTTCCCTTTCCTAAGTTTTAATATTTCTGGTCTCGACCCCACGGCTCACTACAATATTTTTGT GGATGTAATTTTGGCGGATCCCAACCACTGGAGATTTCAGGGAGGCAAATGGGTTCCTTGCGGCAAAGCGGACACCAAT GTACAAGGGAACCGCGTGTACATGCACCCCGACTCCCCCAACACGGGAGCGCACTGGATGCGCCAGGAGATCTCCTTCG GGAAGCTCAAACTCACAAACAATAAAGGAGCATCGAACAACAACGGGCAGATGGTCGTCCTGCAGTCCCTGCACAAGTA CCAGCCCCGCCTGCACGTGGTGGAGGTGAACGAGGACGGCACGGAGGACACCAACCAGCCGGGCAGGGTGCAGACCTTC ACCTTCCCCGAGACGCAGTTCATCGCGGTCACCGCCTACCAGAACACCGATATCACGCAGCTGAAAATCGACCACAACC CCTTCGCCAAAGGCTTCCGGGACAACTACGACACGATCTACACGGGCTGCGACATGGACCGGCTGACGCCTTCCCCCAA CGACTCGCCCCGCTCGCAGATCGTGCCCGGGGCCCGCTACGCCATGGCCGGCTCCTTCCTCCAGGACCAGTTCGTGAGT AACTACGCCAAGTCCCGCTTCCACCCCGGGGCAGGAGCCGGCCCGGGACCCGGCGCCGACCGCAGCGTGCCCCACACCA ACGGGCTGCTCTCCCCACAGCAAGCCGAGGACCCGGGGGCCCCCTCGCCGCAGCGCTGGTTCGTCGCCCCCGCCAACAA CCGCCTCGACTTCGCCGCCTCCGCCTACGACACGGCCACCGACTTCGCCGGCAACGCGGCCACGCTGCTCTCCTACGCG GCGGCCGGCGTCAAGGCGCTGCCTCTGCAGGCGGCCGGCTGCGCGGGGCGGCCGCTGGGCTACTACGCCGACCCGTCGG GCTGGGGGGCCCGCAGCCCCCCGCAGTACTGCAGCAAGTCGGGCTCCGTGCTCTCCTGCTGGCCCAACAGCGCGGCGGC GGCGCGCATGGCGGCCGGCAACCCCTACCTGGGGGAGGAGGCGGAGAGCCTGGCTCCCGAGCGCTCCCCTCTGCCGGGC GCCGAGGACTCCAAGCCCAAAGATTTGTCCGACTCTAGCTGGATCGAGACGCCGTCGTCCATTAAGTCCATCGATTCCA CCGATTCTGGGATTTACGAGCAGGCCAAAAGGAGGCGGATCTCTCCCTCGGACACCCCGGTGTCCGAGAGCTCCTCGCC CCTCAAGAGCGAGGTTCTCACCCAGCGGGACTGCGATAAGACCTGCGCCAAGGACATCGGCTACTACGGCTTCTATTCG CACAGCTAGGCGCGGCCCGGCCCGGCCCCGCCGCCGTTTTGCACAAGAACCTCTCCGCGGTTAGCGCACTGACCCCCGC CCCCAGCCGCCCCATCCGCCCCGGCCCGGCCCGGCAGGGAGGGAGGCAGAGCCGCCGCCGCCGCCCCCCTCCCCGCCCG CCCCCGCGAGGCCCCGGGCGGCCCCGCCGCGCCCCACTGTCAGTAGGATGCTCAGACTCCAACCGTACAGCGCTTCCTT CCTCCCACCACGGATGGATACCAGGGGACGATAGTGCTAGTGGGGAAAAAGAGCCTGTGAAACGCCTGTACATAGTACT TAATTTATTACTTTTCTTTAGTTTCGTTTCCTATTCGTTGCGGTTTTTATTTCGTTATCACTGTTAAGTCGTAACCCTT AGATCCTGTTTAAATCTCCCTCTTCTGCCCCCGGCCCTTCCCCGGCCCGCCCCCAGGTGACCGCGAGCGGAGTTCCGTC CGCCTTCCTCCGCAGCTCCTCGCATGAACGAATCCCGCCCTGCCCCGGGCCGACGCGGCTCGGGCGCGACCGAGCTTCC CTCCGGCAGAACAGAAATACGTCTCGTAGGACAGTCGATTAAAGTAGCATGACGCCTTCCCAAAGCAAAATTAACCGCC TCTGTATCTTTCTTTAAAAGGAATAGCTCGACAGCAGCAATATCATTATTTTCGTGATATTCCTCCCGCCCCCCCCTCC TTGCCCCCGAGTGCCAAATCCATTACCGGTCCCTGCAGGTGCCAAACACGCTGACAAACTCTTCTCAAATTTCTTTGCA GTTTCCCCCTCTTTCTTTATATCGCTGTAAATCTTTGTAATGAATAATCTCGAGGAAAAAAAAAAAAAAGACAAAAAAA AAAAAAAAAGCTATAGACGACTGAATTGTTGGTAACCATAGTGTAGTCCAGTGGAGATGAATTGTGAGTTGTATATTTT ACTGCATTTAGTTTTGGAATTGACTTTTTCATCAAGTAGCTGACCGAGCTCTGCCTGCCCGCCCTGCGGACGCCCCGCG AGGGCCGAACGCCCCGCCGCGCACCTCCGGCTGTGCCACGGCGGAGCGGTGCCGTCCCGCGGCTCCTCCCGGCGAAGCA GAACGGCAAAGCCTTCGGATTTCGAGTAGCAAATCCATACGATTAACGCGTTTTTATACGAGAAACGACTACAAACCGA AATATGCATCGGGCTAAGTATTCGGTCTAGGTTACACTCGGCGGGGAAGTTTCCTAATAGAAATTCAGGGTCATAAACG TGTGTATATTTTTGACTCTCATGTAAATCGAATGTTGTGGTTTTTATATTCGTTCTGTTACGTCCGTGGAACTGAATAC TTTATACCAGTACCTGCTCCATTGAGAAATGTTTCGGTTTTTGCCCGTTTGTATCGTCTGTGTATGACAAGTAAAATAA ACCTGGCAAAACGCTCA
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence was obtained from NCBI ( XM_015289715.2).

no images

Entry 3

GEISHA Id	TBR1.Alfonso.2020	Data Source	Publication
Complete cDNA Template Probe	show GGGCAGCGCGGGGCCGCGGGGCTGCGTTCCAGCCGCGGTCGAAAAAGCGCATAAATGCGGGAAAGGTCACGGAATAACG AGCTCTCACAGCAAACACGCTCTTCCCTTCCCCCTTCGCCATCCTTCTATCTCACAATAAAATCATCTCCTTCAATTTG CCATGATCGTCGCGACCGGGAGCCAGGTGATTATCCTAATTAATGTCTATCTAATTAAATTACTGTCAGCGGTTAACCA ATGGCAGGAGCCGTTTCATCCTCTCCACAAGCAGCGAGATCAAAAGTGAGTCTTTCCTGATTGCTGCATAGTGTCAATT GGCCAATCTCTTCTCCCAGGGAAGAAAAAAAAAAAAAAGAAAAAAAAAAAAAAGTAAATCAAACGTTTGGGAAGCATTT GGTGGATGAAGTGCTTTCTGCCTACCGAGGGTCCCAGGATGTCTCGCTTCTGGTAGCGAGCAGCCCTCAGCTCCAGGGA CGGAAGGGTTATTGCTGCGGTGCAGAGCGATGCAGCTGGAGCATTGTCTTTCTCCCTCTATCATGCTCTCCAAGAAATT TCTCAATGTGAGCAGCAGTTACCCACACGCAGGCGGATCCGAGCTTGCCTTGCATGATCATCCCATTATCTCGACCACT GACAACCTGGAGAGAAGTTCACCTTTGAAAAAAATTACCAGGGGGATGACGAATCAGTCAGATACAGACAATTTTCCCG ACTCCAAGGACACACCAGGGGACGTCCAGAGAAATAAACTCTCTCCCGTCTTGGACGGGGTCTCCGAGCTTCGTCACAG TTTCGATGGATCTGCCGCAGATCGCTATCTGCTCTCTCAGTCCAGCCAGCCCCAGTCTGCTGCCTCCGCGCCCAGTGCC ATGTTCCCCTACCCCGGCCAGCACGGACCCGCTCACCCGGCCTTCTCCATCGCCAGCCCCAGCCGCTACATGGCTCACC ACCCCGTCATCACCAACGGCGCCTATAACAGCCTCCTGTCCAACTCCTCGCCGCAGGGCTACCCGGCGCCGGGCTACCC CTACCCCCAGCAGTACGGCCATTCCTACCAGGGCGCCCCGTTCTACCAGTTCTCCTCCGCCCAGCCGGGGCTGGTGCCG GGCAAGGCGCAGGTCTACCTGTGCAACAGGCCGCTCTGGCTGAAATTCCACCGGCACCAGACGGAGATGATCATCACCA AGCAGGGCAGGCGCATGTTCCCTTTCCTAAGTTTTAATATTTCTGGTCTCGACCCCACGGCTCACTACAATATTTTTGT GGATGTAATTTTGGCGGATCCCAACCACTGGAGATTTCAGGGAGGCAAATGGGTTCCTTGCGGCAAAGCGGACACCAAT GTACAAGGGAACCGCGTGTACATGCACCCCGACTCCCCCAACACGGGAGCGCACTGGATGCGCCAGGAGATCTCCTTCG GGAAGCTCAAACTCACAAACAATAAAGGAGCATCGAACAACAACGGGCAGATGGTCGTCCTGCAGTCCCTGCACAAGTA CCAGCCCCGCCTGCACGTGGTGGAGGTGAACGAGGACGGCACGGAGGACACCAACCAGCCGGGCAGGGTGCAGACCTTC ACCTTCCCCGAGACGCAGTTCATCGCGGTCACCGCCTACCAGAACACCGATATCACGCAGCTGAAAATCGACCACAACC CCTTCGCCAAAGGCTTCCGGGACAACTACGACACGATCTACACGGGCTGCGACATGGACCGGCTGACGCCTTCCCCCAA CGACTCGCCCCGCTCGCAGATCGTGCCCGGGGCCCGCTACGCCATGGCCGGCTCCTTCCTCCAGGACCAGTTCGTGAGT AACTACGCCAAGTCCCGCTTCCACCCCGGGGCAGGAGCCGGCCCGGGACCCGGCGCCGACCGCAGCGTGCCCCACACCA ACGGGCTGCTCTCCCCACAGCAAGCCGAGGACCCGGGGGCCCCCTCGCCGCAGCGCTGGTTCGTCGCCCCCGCCAACAA CCGCCTCGACTTCGCCGCCTCCGCCTACGACACGGCCACCGACTTCGCCGGCAACGCGGCCACGCTGCTCTCCTACGCG GCGGCCGGCGTCAAGGCGCTGCCTCTGCAGGCGGCCGGCTGCGCGGGGCGGCCGCTGGGCTACTACGCCGACCCGTCGG GCTGGGGGGCCCGCAGCCCCCCGCAGTACTGCAGCAAGTCGGGCTCCGTGCTCTCCTGCTGGCCCAACAGCGCGGCGGC GGCGCGCATGGCGGCCGGCAACCCCTACCTGGGGGAGGAGGCGGAGAGCCTGGCTCCCGAGCGCTCCCCTCTGCCGGGC GCCGAGGACTCCAAGCCCAAAGATTTGTCCGACTCTAGCTGGATCGAGACGCCGTCGTCCATTAAGTCCATCGATTCCA CCGATTCTGGGATTTACGAGCAGGCCAAAAGGAGGCGGATCTCTCCCTCGGACACCCCGGTGTCCGAGAGCTCCTCGCC CCTCAAGAGCGAGGTTCTCACCCAGCGGGACTGCGATAAGACCTGCGCCAAGGACATCGGCTACTACGGCTTCTATTCG CACAGCTAGGCGCGGCCCGGCCCGGCCCCGCCGCCGTTTTGCACAAGAACCTCTCCGCGGTTAGCGCACTGACCCCCGC CCCCAGCCGCCCCATCCGCCCCGGCCCGGCCCGGCAGGGAGGGAGGCAGAGCCGCCGCCGCCGCCCCCCTCCCCGCCCG CCCCCGCGAGGCCCCGGGCGGCCCCGCCGCGCCCCACTGTCAGTAGGATGCTCAGACTCCAACCGTACAGCGCTTCCTT CCTCCCACCACGGATGGATACCAGGGGACGATAGTGCTAGTGGGGAAAAAGAGCCTGTGAAACGCCTGTACATAGTACT TAATTTATTACTTTTCTTTAGTTTCGTTTCCTATTCGTTGCGGTTTTTATTTCGTTATCACTGTTAAGTCGTAACCCTT AGATCCTGTTTAAATCTCCCTCTTCTGCCCCCGGCCCTTCCCCGGCCCGCCCCCAGGTGACCGCGAGCGGAGTTCCGTC CGCCTTCCTCCGCAGCTCCTCGCATGAACGAATCCCGCCCTGCCCCGGGCCGACGCGGCTCGGGCGCGACCGAGCTTCC CTCCGGCAGAACAGAAATACGTCTCGTAGGACAGTCGATTAAAGTAGCATGACGCCTTCCCAAAGCAAAATTAACCGCC TCTGTATCTTTCTTTAAAAGGAATAGCTCGACAGCAGCAATATCATTATTTTCGTGATATTCCTCCCGCCCCCCCCTCC TTGCCCCCGAGTGCCAAATCCATTACCGGTCCCTGCAGGTGCCAAACACGCTGACAAACTCTTCTCAAATTTCTTTGCA GTTTCCCCCTCTTTCTTTATATCGCTGTAAATCTTTGTAATGAATAATCTCGAGGAAAAAAAAAAAAAAGACAAAAAAA AAAAAAAAAGCTATAGACGACTGAATTGTTGGTAACCATAGTGTAGTCCAGTGGAGATGAATTGTGAGTTGTATATTTT ACTGCATTTAGTTTTGGAATTGACTTTTTCATCAAGTAGCTGACCGAGCTCTGCCTGCCCGCCCTGCGGACGCCCCGCG AGGGCCGAACGCCCCGCCGCGCACCTCCGGCTGTGCCACGGCGGAGCGGTGCCGTCCCGCGGCTCCTCCCGGCGAAGCA GAACGGCAAAGCCTTCGGATTTCGAGTAGCAAATCCATACGATTAACGCGTTTTTATACGAGAAACGACTACAAACCGA AATATGCATCGGGCTAAGTATTCGGTCTAGGTTACACTCGGCGGGGAAGTTTCCTAATAGAAATTCAGGGTCATAAACG TGTGTATATTTTTGACTCTCATGTAAATCGAATGTTGTGGTTTTTATATTCGTTCTGTTACGTCCGTGGAACTGAATAC TTTATACCAGTACCTGCTCCATTGAGAAATGTTTCGGTTTTTGCCCGTTTGTATCGTCTGTGTATGACAAGTAAAATAA ACCTGGCAAAACGCTCA
Citation	Alonso A, Trujillo CM, Puelles L. Longitudinal developmental analysis of prethalamic eminence derivatives in the chick by mapping of Tbr1 in situ expression. Brain Struct Funct. 2020 Mar;225(2):481-510. Epub 2020 Jan 4. DOI: 10.1007/s00429-019-02015-3.
Copyright	© Springer-Verlag GmbH Germany
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence was obtained from NCBI (XM_015289715.2).