GEISHA - A Chicken Embryo Gene Expression Database
Browse By
- Anatomical Location
- Stage
- Gene Name
- GEISHA ID
- Multiple Parameters
Search
- Quick Search
Data Class
Enter Text:
go
- Gene Family QuickSearch
Transcription Factors
Growth Factors
Receptors
MicroRNAs
- Human Disease Gene Search
Documents
- Downloads
- Protocols
- About GEISHA
- Contact Us
Resources
- Transgenic Birds
- Model Organism Databases
- Gene Expression Databases
- Genomic Resources
- Anatomical Atlases
- Chicken Stage Series
_

TUBB1
tubulin beta 1 class VI

The human orthologue of this gene is associated
with the following human disease:
Gene
Official SymbolTUBB1
Official Full Nametubulin beta 1 class VI
CGNC ID49797
also known astubulin beta-6 chain|beta-tubulin class-VI|tubulin, beta 3, Tubulin beta-6 chain , Beta-tubulin class-VI
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_205445
PolypeptideNP_990776
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.819
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human81027ENSG00000101162MIM:613112MIM:612901
Mouse545486All phenotypic alleles (3):Targeted, knock-out(1) Targeted, other(2) MGI:107814
Xenopus
Zebrafish558552ENSDARG00000053066ZDB-GENE-110408-5ZFIN:ZDB-GENE-110408-5
Gene Ontology
Molecular FunctionGTPase activity, GTP binding, structural constituent of cytoskeleton
Biological Processprotein polymerization, spindle assembly
Cellular Componentcytoplasm, microtubule, plasma membrane
Links to other databases
Entrez Gene396427
Ensembl GeneENSGALG00000007447
KEGGgga:396427
GEISHA IdTUBB1.Agarwala.2005Data SourcePublication
Complete cDNA Template Probeshow
GCTTCTCCTAGAGAACTGCAGCTGGAAAGCCTGCGCTAGGTTGTAGCTACCAACAGTTAAGCTACACAAAATGCGTGAG
ATCGTGCACCTTCAGATTGGCCAGTGTGGAAACCAAATTGGAGCTAAGTTCTGGGAGGTGATAAGTGATGAACATGGAA
TTGATATTGCCGGAAACTACTGTGGGAATGCATCGCTGCAGCTTGAGCGAATTAACGTGTACTTCAATGAGGCTTATTC
CCATAAATATGTGCCCCGTTCTATCTTGGTGGACCTGGAGCCTGGTACAATGGACAGTGTACGATCTAGCAAAATAGGC
CCACTGTTTCGACCTGACAATTTTATTCATGGTAATTCAGGTGCTGGAAACAACTGGGCTAAGGGCCATTACACAGAAG
GAGCTGAGCTGATTGAAAATGTCATGGATGTGGTCAGGAACGAGTGTGAGAGCTGTGACTGCCTGCAGGGATTCCAGCT
CATCCATTCGCTTGGTGGTGGTACAGGCTCAGGTATGGGCACACTCCTCATCAACAAAATCAGGGAAGAATATCCCGAC
AGAATTATGAACACTTTCAGCGTTGTTCCTTCACCCAAAGTATCTGACACAGTTGTAGAGCCCTATAATGCCATCCTCT
CCATCCATCAGCTAATAGAGAATACAGATGAAACCTTTTGCATCGACAACGAAGCACTATATGATATATGTTTTAGAAC
TTTAAAGCTCACCAATCCCACCTATGGTGACCTCAATCACTTAGTGTCCCTAACAATGAGCGGTGTTACAACCTCACTC
CGTTTTCCTGGTCAGCTGAATGCAGATCTGAGGAAGCTGGCTGTTAACATGGTGCCCTTTCCTCGCCTGCATTTCTTTA
TGCCAGGCTTTGCTCCGCTAACAGCGCGAGGTAGCCAGCAGTACAGAGCCCTCTCAGTGCCAGAGCTTACTCAACAGAT
GTTTGATGCACGCAACATGATGGCAGCCTGCGACCCCCGTCGTGGGCGTTATTTGACTGTGGCGTGCATCTTCAGAGGC
CGGATGTCTACCAGAGAAGTGGATGAACAGTTGCTGTCTGTCCAGACCAAGAACAGCTCCTACTTTGTGGAGTGGATCC
CTAACAATGTCAAAGTGGCTGTGTGTGACATACCACCGCGAGGACTGAAGATGGCAGCTACCTTTATTGGCAATAACAC
AGCCATTCAGGAACTCTTCATCAGGGTTTCTGAACAGTTTTCAGCTATGTTCAGAAGAAAAGCGTTTCTCCATTGGTAC
ACTGGTGAAGGCATGGATGAGATGGAGTTTTCCGAAGCAGAGGGAAACACCAATGACCTTGTTTCTGAGTATCAGCAGT
ACCAAGATGCCACTGCAGATGTTGAGGAATATGAAGAAGCGGAAGCTAGCCCAGAAAAAGAAACATAGAAACAATGGAG
GTATAAAACATTCTCCAAGTAAGCCTGTTGTCATTCACTAAAGGAAAAACATTAGCCACAAGCTGCATACCAAAAATAA
CACCTTCCTTAAGATTATTTTCCTCTCCAAAATTACAGTACTGTGCTTTTGAAATTAACAGCAGGTATGGTCTACTTTC
CTCTCTACACTAAATGACTCCCAGAAAGGATCCACTATGAAGACAGGTTCCCTCATAACCGTCTTCTAAATGTATTCCC
TTGTGGAATACTATTGCTAGACGCTGCATGTAATATGCAGACAGTGTGTGTGTGTATTAGGGTCACAAGCAACAGCAAA
AGATGTTATAAACTCATCAAATTTACTTATTTTCAGGTAACCAAAGTCCATGTTTTGTCTGTGAACTTGCTACTGCGTT
GGGAACACACATTTGTAAGGCCTATAAAGGCAATATGTCGTCATGCACTCTAGAGATGGATCTAGAGCTGTCAACAATT
TCAGTTCCTTTAGCAGCAGAATGAAGGGGAAAAACAAAAGACTAAATATTCTTTTTTTTTTCTTTTAAGAGGTTCTATT
TTAATAGTCCTGTCACATTGCTGGTTTGCATTATTGCAGAGCTTGTACTCATTTAGTGGTTTATTTCAATTTCAAACTA
TAGCTTCAGTTATACTAGCATACCAAATTGCAAACAGTGTTTAACAGTTTTGGTGTGGTGTTTTGGTTTTTGTTTCCCT
CCTTCTATGTAGTAACTATTATAAATTTTCTTCCTATCACTCAGTACAGCAACAGATGGAATGGTTTGCAGCTAAATAA
GAGATGTAAGTTCAAGGGCAATCACTAAATAAGAAAAATACCTTGAGGAAGAAAAATATGCCTTTCACAGCCATCTAAT
TAACATTGCATTTATAATATTCCTTGAAATAAAAATATATAGCATTCTGTAAAATACTTCAACACTTGAAAAATGTAGT
AGGCAAAAATCATAGTTTGTAACGACTAACATGCACTTAAAAATTGTTACTTGAAAAAAAAAAAAAAGCTTGTTTTACT
CAGGAGAGATTCTGTTGTACTCTAATGAAAGGCCACACCTCATGTTTTAGTCTTCTGTATTGTAGTCAGCAGTAGAAGC
ATCCAGGTAAACACATCTGAATCCAGCTATGGAAGTACATTATCTTCCTTCCTATGCACAGGGACAATATTATACTTGC
TGCTGAGATACACAGCAGCAGAAACATCCATCTTCACTTGGTTAGGGGAAATGACTGTGTTCCCCTCCGTTCCCACTGC
TTCCTAGTGAATCCATGCCTGCTCCCTCACAGGGAAAGTGACAAAGTGCCAACAGGGACAGTAATACAGTCCAGAGCCT
TCTGCACTTCCCTTCCCACCCCATACAGGGAGCCACCTCCAACTCCTGATTCCACTGATCATGGTCCAGACAGTCTTGG
AGATGGATCAAATGCAACACCTCCATGGAGAAGTATTCTACTTTGTTTTCCCTTAAACCTAAGTGACACCAAAATGCCT
TTGGCTGAAAAAATTTATTCTGAGCACAAAAGCATTCATTATGGAAATGAAGCAGGCAAAAAAGTTTTAAACAGCAGTT
ACATCTCTCTCTTATTTATAGACCTGAAATATCAGCATGAAAGCCAAGAAGAGATCTGTCTTGACAATAAACATCTGTT
GC
CitationAgarwala S, Aglyamova GV, Marma AK, Fallon JF, Ragsdale CW. Differential susceptibility of midbrain and spinal cord patterning to floor plate defects in the talpid2 mutant. Dev Biol. 2005 Dec 1;288(1):206-20. Epub 2005 Oct 21.
CopyrightCopyright © 2005 Elsevier Inc. All rights reserved.
CommentsAccording to the authors, "Digoxigenin (DIG)- and fluorescein-labeled riboprobes were synthesized from chick cDNA plasmids..." As information provided was insufficient to verify exact sequence used to synthesize probe,the sequence below was obtained from NCBI (NM_205445).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25-26
stage 26
Midbrain
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.819

Mouse

EmageMGI:107814
EurexpressMGI:107814
MGI GXDMGI:107814

Frog

Xenbase

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-110408-5
Home | Contact
     
© 2008 Arizona Board of Regents
This website is hosted by the Biotechnology Computing Facility at the University of Arizona