GEISHA - A Chicken Embryo Gene Expression Database
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_

VCAN
versican

The human orthologue of this gene is associated
with the following human disease:
Gene
Official SymbolVCAN
Official Full Nameversican
CGNC ID49376
also known asPG-M, versican core protein|chondroitin sulfate proteoglycan 2|chondroitin sulfate proteoglycan core protein 2|large fibroblast proteoglycan|proteoglycan
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_204787
PolypeptideNP_990118
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.4974
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human1462ENSG00000038427MIM:143200MIM:118661
Mouse13003ENSMUSG00000021614All phenotypic alleles (3):Targeted, knock-out(1) Targeted, other(1) Transgenic(1) MGI:102889
Xenopus100101672, 100037127922301
Zebrafish116993, 323465ENSDARG00000009401ZDB-GENE-011023-1, ZDB-GENE-030131-2185ZFIN:ZDB-GENE-011023-1, ZFIN:ZDB-GENE-030131-2185
Gene Ontology
Molecular Functioncalcium ion binding, carbohydrate binding, hyaluronic acid binding
Biological Processcell adhesion
Cellular Componentproteinaceous extracellular matrix
Links to other databases
Entrez Gene395565
Ensembl Gene
KEGGgga:395565

Entry 1

GEISHA IdVERSICANV3.Hudson.2010Data SourcePublication
Complete cDNA Template Probeshow
TACCTCAGACTGTCACAGATGGTGAAATAAGCCCTTATGATACGCTGGGAAGGACTGAATATGATGTTTCACCTAGGTT
AACAGAGAGCACATCTGCAGCTTTGGAAGTGGAGCACACTTACTCTGAAGCAGAATTGTCCGAGGAACAAGGTAGGTCT
GAAAGCACTGAGGACGCTTTCTTGACCTCTGTAGTTTTTCAGGATAGCACAGCTGTAGCTAAGAGTTCCACTGGTTCAT
GGGAAGATATTGAAACAGGAGATACACAAAAACATGATGGTGATAATCAGACTGAACAAATAGAAGTGGGTCCTGTGAT
GACAGCTACAGATAGCTTGGTACCAGCTTCTCAGAGAGAGTTGCCCAGGACAGGGTCTTCAGTTTCACTAACAAAAGAA
AATCTGTATCTTGGTTCTCACTCAACAAAAGAACCCACAAAAAAATCAATGGAAGCAAAATCTGACAAGAAACTTACAA
CTGTTGTAATCCCTAAGGCTTTGTTCACTGATCAGTATGATCTTACTACAGGGGGGGAGGGAAGAGAGAGCATGTACAC
CGTTATGCCTGATAGAGTTTCTGGCGTGGCTCTGGTTAGCATCCCAGAATCAGATGTTCCTGCTGTATCAGAGACACTC
ATGGATGAGCTTGCGGTAACCACTGGACAATCTTCTACAGCAGATGAGTCAACTCCATTCATTAAATTTAGTTCTTCTG
CAACTGAGTTGGATAATGAGGCGTCAGCTGAGGGAAGCAGAGAGGACTTAAAAGATGTGCATCTCACCACGTCATCTGG
AATACCTGTATCCTTTACTTTATTCACCGCCAATGAGACAGGATCTGAGGTCACTGCTCTCTCAGAAAGTACCAGTGCC
CCACAGAAGTTTGAAGAAGGCATCACATCTGTTCTTCACTCATCGCAGCAAACAGAAGGATCGGCTATTTTAGAAAAGC
AGGAAAAAACAAAGGAGCCAGAAATGAGTACAATAGATGCTAAAGTCCTTTATATCACAACTGTTGTTCCTGCTTCTGT
TACGGCAGGATCTGAGGGACGCTTTGGAAGTGAGAAGTTCACGCACACTCCTCCAGTTTCTGGCATGTGGCTGCAGACA
GATAAGGATCAGGTCTACATGACAGAAGAAACATCTCATACTAAGAGAATTGAGTTAGACACTGAAGATGATATCTCTG
GAATGGAGCCTACATCATCTCCAGGGCAAATTATAGAATATACAAAGCATCTAGGAGCTCCAGTTTCAGCAGTAACAGA
TGAAACCAAGACAAGCATGGAGACAGCAGAAACAGAAAGTGATGAAGAAGTAGTATCAGCTGATTTTGATCAGACTAAA
GGTACTACAGAGGTCTTCCATACAAGCAGCTCTTTAGATTTGGAAAAGTTTACTCTATCCAAAATACCAGAGGATGAAA
GTAGTGCAACAGTGAAATCGTTTAGCTCCTCAAGTGGTACTGTGTTACCAACTGCTGTGGCCACTGTCTTGGAGGTGAC
TGATCATGAAGCAGATGAAACATCAGGATATGTTTTGAACATGACCTTTTCTACCCCAGAAGGTGAACAAAGAAAGGCT
ACTGAGAAATCACCTGCAACTTCTGCTGAAGATGAAGTCTCTACAGGAACAGAGATCTCAAAATACACAATGACAGAAG
GCGGCCAGATAAGCAGTGTGACATCTGCTGAGAAGGAGTCAGTGGCAGCACTTCAGGAGAGGGAAGAACAACCGTCTGT
TGGCTTACCAGAAACAAAGGAACCCTTTAAGTTTACAGATGTAACAGAGATAGAGACTACAGTTCCACAGAGAGAAGGT
GATACTTCCCTAGTTCCAGTCACTGTAGGTAGTGAGGACATTGGAGAGATGCAAGTTACTGACCATACTTCTTTTGACA
GTATCATTCATACTGAAGCAACAGTAACAAGTACAAAAGCTAGTGAAGTGTTTCCTAAGGAGCTCTCCACAAAAGATCA
AGATAGGGAACTAGGTACTGCCATGGGGTCTACCTTACCTGTGACATCTGTCCAAATGCATGAACAAAAGACGACAGCA
GGATTTGAATCACCTCAAACAACCACTCAGGAAAAACATGACGAGATGGGTTCAGCCTATGATGAGATGTATCCAGCAA
CAGAATTATCAGTGCCTGCATTAATGCTTACAGAATATGGACAAGTTTCAGGGCCTGTTGAAACTAGCACCAGGTCTTT
GCATCTCACAGGGACTCCCAAAGCTGAGACTGCTACTGACCAAGAAGAGAAGATTACAGAAGCAGTGCCTGTAACATTT
GGTACACAAGCAAAAGTGTATGAAAGCAAAGGAACCACCACAAGGGAAGAAGACAGAGATGTAGGAAGCTGGAATTCTG
TGTTGCCCCCCCATACGATGCTGAGTAGTCCTTCTACTGCAGGAAGTATTAGTCTTCTGACTTTGGGAGCTTCTCCAAG
TCAAACTCCAGAAGGTTCAGGAATATCAGAAGAGCTTGAAGAAGTCAAAACAGTTCCATTTTCATCTAGGGCAACAGAT
AAGACAACTGTTATTAGTGATTTAACTACATCATCTATTAGCGCTGTAGACAAAATTCAGCCTACATCAGCATCCAAAC
CTTTTGTTTCTTCAAAGTCGCCACGTATTATTCCTGAGGAAGATGAGGAGGTAACAAGCAGTGACATCATAGTAATTGA
TGAATCTATTTCTCCAAGTAAAGCCAGTGCTGAAGATGATCTGACAGGAAAGATGGTAGAACCAGAAATTGATAAGGAA
TATTTCACATCATCAACTGCTACTGCAGTTGCACGGCCTACTGCACCACCCACAGTGATGGAGGCCACAGAGGCCTTAC
AACCACAAGAGGTGTCTCCTACTTCACACCCTGACAGTGGAACTGACATAAGATTGTATGTTATTCAAATCACAGGCAA
TGATACAGATCATCCGGTGAATGAGTTTTTGGATCTGTTCAGTCGCCACATTCTTCCTCATGCAGTAGATGAGACCCAT
ACTGATGCAGAATCAGCTCAGACTGAACCCTGTACTTCAGACTCTGTGCAGGATTCGTCTGAATATATAATATTGGATC
CTTTCTTTCCAAACTTTATGGACTTTGAAGAGGAGGAAGAGGACTGTGAAAATACTACTGATGTTACAACTCCTCCAGC
TTTGCAGTTCATCAATGGAAAGCAACAAGTGACAAGTGCACCTAAAAGCACTAAAGCTGAGGAAGCAAGAAGTGACCAA
ATTGAAAGTGTTGCACATTCAAAAAATGTAACTTTTTCACAAATCAATGAAACAAACACCTTCATAATATCTGAAACAG
AAGCTTCTGGTACAATGCAGCCAAGCAAAGCTGGAGAAGTAATGGGGGCATTTGAAGTCACACAGCCGACAGCAGATGT
TGCAATGTTAGAACCAGTATATAGTGGTGAGTCAGAAGTTACCACAACAGACAAATATTTAGAGATTACGTCTGTGTAT
GAGCAGTCACCAAAAAAAAATAAGGAGACTGTAATGTGGCATGGAACTGAGGAGAGCTCTACCAAAGACACAAAAAACT
TGCTTTTGATCACTAATGAATCTTCTGGAGATGGCTCCACTGAATCTGATTTGTCTAGGTCTGTGTTCACAGAAATTTT
GACAATGTCAAGTCATGAAGATAGTGAAAAAATTTCTCATACAACTTCTGTTCCTACTATCCTTTCTGTGGAAAGATCT
GCAGTAACTGCTGCTCCGAGTGCAGATTCTGATACTGCTACTGTAGGCATAGATGTGAAAGACCTTATTCCAAAAGGTG
GGACCGCTACTCCAGGAAATTACTATAAATCGACTATTAAACTTGATGCAGAATTCCCTTTTGAAAGCAACCCAGAAGC
AACAAGTCATACAACAAAGCCTGACATGACTGCTTCTTCTTTTATAGTTCTGGAAGGTTCTGGAGATGTAGAAGAGAAC
AGCACTTTAGCTTCAGCCATGACAACAGAAACAGCAGTTGCAGAAACACTTTCAGTGCAAGATACTTCTTTGGGTTCTG
GCACAGTACTGCCAACAGAAATTTCTGTAACCATTTCAGAAATCACCCCTGCTTTGCCTGGAGGAACAAGAATTCTTTA
TTCTACTTTTGATCAAAGTTCTGAAGCAACTGTTTCCACCAATTTTGTGTCTGAATTAATTATGGAGCAAGTAGTTGGC
AGCTCTGTTGCAACTGAAAAGAAAGTTGAAGATGAAAAAGAAGTACAGACTACCGTTTATTCGAGTCAGGAAATTTCAA
CCACTGATGCAAAAGGAAAATCAGAACTGGATGAGTTTGGAAGCACTACTAATGAAGTCAGAACTGTAAGTCAGGAACC
CACTCCTCTCAGAGAAATAGTACCAATAACAGGTACCATGCATTCTGAAATCAAAAAGGTTACCGCCACTCCTTTCTTG
AGAGAGAAGCTTTTTATAAATGAAGGATCAGCTGAAGAACCAGCAGACTTATTTGCAGGGAGTCCCACAAGAAAAGTGG
TAAGTACTGACTCCCCATTTACTGATTCAGGTTCTGGAGACATAGATGTTATCACTGAGTCTGCTACTTTGACTTCAGT
TCCATCAAGGTCTGTCATAGAAACACAAACAGTAAAACATGAAGGAAATATTAATGTCATCAGTGTTTCATTGAAGAAT
ACCACAACAGAATATGAAGAGCACATAGGAACAGGTGGACCAGTGACATCAGTTTCAAGTACTGGATCAGACGGCTTGA
CAGAGGAGTCTGAAGTAGCAATTGAGATGTCTGAGAATGTCTTTAGTACAGAAAACCAAGGAGAACCAACACAAGAAGC
AGTACCAACTTACACAGCTCCTTCTGACATCAAATCAAGACTTGGTTCTAGAAGAGAGGTAACATCCCATGTTACACCA
GTAATTAGAACAAAGGATTTAGAAACAGCTGAGGTCACATCATCTCCAGAATCAGTTGTGAATAACAGCACTCTTGACA
CCATGGTGACACATGGTACCATAAGAGCAGTAGCTGAGTCTACAGAAAGCAAAAAGGGAAAAGGTAGCTTTTCAGCTGT
TTCTTTGGGCAAAATTCTAATGATTGAGCATGGCTCTGGAGAAGAACTCAAAGTTGACAGCAGCACCACAAAATTAATG
TCTAATGGACCTACGGAAAAACTGCTTGGAAGCCATTTTTCATTTTTTGACCAGGGATCTGGTGAAGCAGAAACTTTAA
CTGAATCATTTACAAAAGCATCAGTTTCACCCACTGGGAAACCAGAACCACAGGAGCAGTATGGCAGAAAAACTGTCAG
CATGCCATCCGCTGTGGTTCATGCCTACACTGCTGAACCTAATGAGCTAGTTACAAGTACTGAACATGACATAACCTCT
TTGCAAACTGTAACTGATACAGAAATGGAAGAGAAAGCAGCTAATGAGCTCACAGTGACATCTTTTGCTACAAATCTTC
CTTTGTCAGAAGATGTGCATTCATGGGAAGACAGGCCAAGGGAAATTTTACCAAAAGCAATAGAATCTTCTGGAGAAGC
AACGGAAGATCCATTCTTCATAAGTACACAGGCTAACCATGAACATGTGGAATTTTTAAGTGTTCCCACTATCAGACCA
CACTCAGAAGAAAACAAAGTAGAAGCTGAATCTGATGAAAAAATATTGTTGCCATTTAATAATGACAGAGTTACTGAGT
CTGCAGTAATTGAAAGGAAATACTTAAGTTCTCCATTTACAGATACAGAGCAGGAGGAGGAGTTGGTACAAAATATTTT
TCCTACAGAAGATATTCCCAGATTATTCCTGACACCTAAGGAAGAAAAACCAACAAACAATGAGCTCATCAGTGATCCA
TTATTTTCAGGACAAGGATCAGGAGATGAATTTACTGTTATTCCTTCAGTAGAGTCATTGGCTGTGAAAGAAACCACAA
ATACTTTAAGTCCTTGGCCTTTTCATCCTGCAAGTGTAGGACCTAAACTTTCCACTGACAAGACACAAGTCTTTGAAAG
TGGAAGCACTGACTCAAATGCTGAAATTAATGAAGAAATTACAACTACTGCAGCAGAGCTGACAGAAACTGCATACTCA
ATGGCCACCAGTTCCCCAGCTTTAGAAGAAGAGAGCTCCAGTCACTCCAACTCTAAAGACAAAGATATTACACATTATT
TTCTTGTGATTGAAGACCCGTACAACAAGGAAATGGACCATAGAAGGGGAGAAAATGGAACGAGCAGGCCACTACCTAC
TCCTGGAGATGTTTCTCTTGAGGAATCTTCACATATGCTGACTACAGATGACGTAACTCCTGTTTCTGTAATACTGAGC
GAAACTCCTTATCTTGAAATGGGAAAATCTCTTGCAACATCAGCAACAAAAATGCCAAGCAGAGTATTACCTGAAAGTT
CTGGAGAGGGATCTGGTTGGGATGGTGTTTCAGATTCATTTGCCCCTGATACATTGACTCATTCAACAGCACCTTCTGT
GATGGAAGTTGAACTAACTGCTTCATCTCATATTCCTGGGGTTTATTCTGAAGTTATGACAACACATGTACCGGGAGAT
GGATCACAGACTGTAATCACAGGATTAGCATCTCTTTTTACAGAAGAAAAAGAGATTGTGGCAAATCGAACTGCTGCTG
ATCCAAAGACAGGTACATCGGAAGAACTGACGAGTGATACTGGGATGTCACTGGATATTATTCCAGTGGTTGATGATAG
AAGACACGTTACACTGAATGTTTCTGTTTATGGTGATATTACACTAATTGAAGAACGACTTCAAATCCCATCAGAAAAA
ACAACTATTATAGACATGGATCACTCCAAGTCAATGCCTGAAGATATAATAAGTGTGCAGACAATGCCAAATCTTGTCA
TACGGTCAACACAAGTCAGTGATGATAACATGAAAGCTGAAGAGGACAAGTATGATTCAATACTTAATTTTTCTACAGT
TGAAGAGAATTCATTTGGATCTGGTGATAATCTTTCTTTGACTACTTCCATTCAGCCAAGTAGTGAATCAGTAACAGCT
GGACATGGACCAAAATTAGTAGACAAGGATTTAGGTTCAGGGTATGCCATGCAGTTTGCAACAGAAACTCTCACAACTA
CTGTACTCAATGAATTGGGAATTTTCCTTCCAACAGTACCCTCACTGGTAAGCCCACATATGCCTCATGAGTCTAAAGA
ATCTGAGTTCGAGGCTAAACACATTGGAAGGACAAGCACAACAGATGATGTGTATGAGCCTTATACTTCAGCAAACAAC
CAAGTAATAACAGATCAAAGCAAAACAATGTCTATTTCTGGATTTTCTGGAATGGGCCAAGAAGAATCAGGTGATAAAA
AGCCTATGATTCCTTCCCTTACACCAGATTTAACTATGGAGACAGAAAAGGCTTTGACAACTGACACATTTGATGTAAG
TATGGTCACCACGCAGAGTATGTCCCAACATGCAACTGTATCATCTAGCAGTAGTGAAGAAAAGCATTCTACAGTATAC
ATGCAAACAAAATCAGCATCAACAGAGTATGAAGAAACAGACTCAGTGAGTTTAAATTCTGTATCTCAAAATCCTAAAT
CCTCAGTAACTGTTTGGTTAGTTAATGGAGTATCTAAATATCCTGAGGTAATTATTCCAAGTACATCATCTGCAAAGGA
TTCAGATCAGTCTGATCATTCCTCAGATGGAACTTTCAAAGAGGTTAGTTCTGATATGGCAGCAACTTATAAACCACCC
ACTACAGACCTAGATACAACAGTGTCTTCTCTGCTAGTGTTTTCTCCTGAGCCTGAATCAGAAAGCATATCTACTGAAA
GTACTCCTCACTTTAATAAATTTGTAACGGAGAGGTCAGAGGAGACAGAATCTTCTGTAAATGATCTGATTATTGAGGA
AAATGCTACTGTTTCTGGAGATTCTCCATCAATACATGACTACCCTACTGCTTTTTGGAATTTTGGAGAAAGAACAAGC
ACAGATGTTCCAAAACTTAGCACAATAGAAGTTGAATTTTCTTCAGAGAGAGTGAAAAATCCCAGTCAAGAAAGTGATA
GGAGTACTGAGAGAGAGAGACCAAGGCTTTCATCCGCACCTGTTTCAGATTCACCCAACAGTATAGAAGTTGGAGTATT
TAAACCTGACCAGGAAGCAGTTACAATGCTAACTTCATCTTTGGAGCCTTTGGATAGAAGTTTGGAAACACAGTCAGCT
TTGCTTGGTCCTTTGCTTGGTCAACAGGAGATCACAACAATTTCTTCTAACATTGCAACAAACAATACAGCCCCTGGAA
ACAATCCTTATTCAAATGAACAGTCAACAATAAGCTCTGAGTTGCTAAATACTATTGAACTTGTAACTTCATCATTTTC
CCTTCCGGAAGTCACTAATGGATCAGATTTCCTGATTGGCACAAGTGTGGGTTCGGTTGAAGGCACAGCAGTGCAAATT
CCAGGACAGGATCCATGCAAAAGTAATCCCTGCCTTAATGGTGGTACCTGCTATCCACGTGGTTCATTTTACATCTGTA
CATGTTTGCCAGGTTTCAATGGTGAGCAGTGTGAATTAGATATTGATGAATGCCAGTCTAACCCATGCCGCAATGGAGC
CACATGTAT
CitationHudson KS, Andrews K, Early J, Mjaatvedt CH, Capehart AA. Versican G1 domain and V3 isoform overexpression results in increased chondrogenesis in the developing chick limb in ovo. Anat Rec (Hoboken). 2010 October; 293(10): 1669–1678.
CopyrightCopyright © 2010 Wiley-Liss, Inc.
CommentsThe probe was amplified by PCR using the following primers: 5_-TACCTCAGACTGTCACAGATGG-3_ and 5_-ATACATGTGGCTCCATTGCGGCA-3_ and was extracted from NCBI Acc# NM_204787.1.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25
stage 25
stage 25
Wing
Wing Mesenchyme
 

Entry 2

GEISHA IdVCAN.Singh.2016Data SourcePublication
Complete cDNA Template Probeshow
GCAGTATTAGCCCCTGAGCTCCACTTTTGGAACCATCGTTTGCTATTTCCTTGGAGAACAAAATTCCTGCTAAACAGGA
TCATTTGTTTGCGGTTAGGTGGGTGAGATCTGCGTGACTTGCGGAAGAATCAGGATCTTGGCTTTCTAGAAAGAAGTGT
GTGCACAAAGAGATTATAGGTTGTAATTGGTGCAGTGTGTGCGTAGGAGTTTTTCTGTTATGATTTCTTACCCTGGTCA
GTGTGACAGCTGACCTGGATGTGTACAGTAAGTGTAGAAGGTAATGTTTGAAAGGACCTCTCCACATAAAGGACTGTGT
CTGATTATTTCTGGGAAGTTCCCTGCACAACTCTGGGCACAGGAAAAAAAAGGACACAGCACAAAAGGGAAAATAAAGA
ACAGTTAAGTTCCCTGGGATACACTTTCTAAAATAGCATTGCAAATACAGAGACAGATGAGAGGTTTATGCCTTTGTGT
ATGTGGGGACGATACAAAAAGTTGTAAGGGACGAGGAGAAGAATAGAAAACACAGCCAACGTTTAAGAGTTTGTCCTAG
GCAGAGCTACCCGTGAGGCAGCCTTGCCACGGCTTATCGGGAACACTGATTACAGTCCCAGACAATATCTCTTACAAAA
TGGCAGTGACCGCTCCATCCTGGGTACCTGACCTTTATATGTTCAGCCTGGGCTGGTTAGCTGGTTCATTCCCCACCCC
TGCCCCAAACAATGCACATAATACTTTCTCTATTATATTATCTGTAAAGGGTATATTGTGAAT
CitationSingh PN, Ray A, Azad K, Bandyopadhyay A. A comprehensive mRNA expression analysis of developing chicken articular cartilage. Gene Expr Patterns. 2016 Jan;20(1):22-31.
CopyrightCopyright © 2015 Elsevier B.V. All rights reserved.
CommentsThe complete cDNA template sequence was obtained from the information provided in the publication as described in Singh et al. 2016. The probe was synthesized from cDNA clone ChEST644d9.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25-30
stage 28
Limb Buds
 
31-38
stage 31
stage 34
stage 36
stage 38
Limb Buds
 
all
 
  
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.4974

Mouse

EmageMGI:102889
EurexpressMGI:102889
MGI GXDMGI:102889

Frog

Xenbase922301

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-011023-1, ZDB-GENE-030131-2185
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