Geisha

home

contact

A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

Quick Search

Data Class

Enter Text:

Gene Family QuickSearch

	Transcription Factors
	Growth Factors
	Receptors
	MicroRNAs

Human Disease Gene Search

	Downloads
	Protocols
	About GEISHA
	Contact Us

	Transgenic Birds
	Model Organism Databases
	Gene Expression Databases
	Genomic Resources
	Anatomical Atlases
	Chicken Stage Series

WNT3
Wnt family member 3

Gene

Official Symbol	WNT3
Official Full Name	Wnt family member 3
CGNC ID	49060
also known as	proto-oncogene Wnt-3\|wingless-type MMTV integration site family, member 3, Wnt3
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_001081696
Polypeptide	NP_001075165
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.99

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human
Mouse
Xenopus
Zebrafish

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	374142
Ensembl Gene	ENSGALG00000001079
KEGG	gga:374142

Entry 1

GEISHA Id	WNT3.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	TTATAAAAGCTTGCGGCCGCAGAATATGCACAAAGGTCTTAGCGGGTTAC
Reverse cDNA Template Primer	GCTCTAGAAATTAACCCTCACTAAAGGCAGCAGGTCACAGCCATCAATC	cDNA Template Length	893
Forward cDNA Template Probe	show GGGATAGGNCCACNNNNNNNNNCCCACGGGTAGGGGAGCTTCAGCTTCTGTCCCTTGTCCCAATGAGCGGCGTCTCTGG GCCTTTTTTTGCAGAAATTCTGGCAGTTCTCATAGTAAACCAAATTCCCGTTTTTGTTGGTGGCCTTGAAAAAAGCAGA CTTAGGCCGAAGAGTTTCTACCCAACCCCGGGACTCCAGGTGCTTCTCCACCACCATGTCGGAAGCACTGTCTGTATTT ATCCTTCAGGTAATCCTGCGATGGTCCGAGAGTGTGGCTGAGCCCACCACAAAGTCTTGACCTCTCATCTTCCCCATAG CCCCTGGCACTTGTGCTTTTGGTGCATGTGGTTCATAATGGTAGTCCTCCCGGCCTCTCTGTTGTGTCTGTTCATGGCC GAGCGGGCCTCCGGAAGGTTCTCTCAAACGTCTGCGAATTCCCGGGGAACCAAAATTTGGTATGTTGCATCCTCGCTGC ATCCACCACATTTCAAACCCTCTCCTGGAGGCCCTTTGTGGCGGGAGTCACAGCCACAAATGGTGGACGTGCACTACGC TTCTGAACCAGTCACACCAGAGGTAACGCTGGCTGAGGCTATGGCGTGCATCAACGCACACTCCCGTGTGGGTTTACCC AGGAGAGTCCCGGAGATGCGCCGATTGTCTTAAAGAGAGGTGCACTTTGCTTACGACATCGGAATGATAATGGCACTCA CTCATGCCCTACTTCACAAACTCTTCCGCATTGGTAATGATTTTTAAGTACTTGCCGCAGACGCGAATCTGCTTGCTAA CAAACTCCCCGAATTACCCCAAACGAACCCTAAACACCCTCGTATTGTACTGGTACCCAACAGCCAAGGACACCACATG GGGAACCCGCTTAGACCTTGTGCCTTTTTTGGGGCTAATTTTTTAAAAAAANANNNNNNNNNCNNNNCNGCTCCGGTTC TGTCCTTCTGTACCTGGCTGTTTTGCTAGCTTTGTCGTCGGCGGTCTCGGGGGGCTCCTGAGCGATCCATGATGCGGAA TTGTATGGATCAACGGCATATGCGAGTCTACACTAACCGTCACCTGTATCCGTAGGCGTTATGTGTTTTATCGTTCTTG TAGGTCTGTGGACCTGCGATTATTAAGTGTCTGAAATCTAGTTCGTTAAGACCTTACTTATATCGACATGAGGAGTTCA TCGCGGTTACCCTGTATCCAATTGTTGTCAATGCACGGCTTGGTGACATGGCGGATCTATGTGGTGTCGTCCCATCGTG CTTATTGCTCTTATGTCGCAGGGTCGAACATGACAGCATGGCTTGATAGTATCTATATACTAGGTATAACGTACGTATC GAACTCTCTTGCATAAATCTATGTCCGTATACTTGCAGTGGTATGAATGATAAAGACATGGTTAATATGTCTATGAGGC ATCTCTGAGAGTTGATACCTAACAATATTGACACTTTTCATACAGTGAGTGGACAATAATATGCGGCTTGCTTCTTATT ACGAATATGATTTGATGGATACACGAGATATATGTTGCGGAGATCAGCGATAGTGTCTCGATTATATATC

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

13-18

stage 18

Diencephalon
Mesencephalon
Metencephalon
Myelencephalon

19-24

stage 20

stage 21

Diencephalon
Mesencephalon
Metencephalon
Myelencephalon
Spinal Cord

25-26

stage 25

stage 26

Forebrain
Hindbrain
Midbrain

Entry 2

GEISHA Id	Wnt3.Chapman.2004	Data Source	Publication
Complete cDNA Template Probe	show GCTGGAACTGCACCACCATCGATGACAGCCTGGCCATCTTTGGGCCTGTCCTGGACAAAGCCACACGGGAGTCTGCGTT TGTCCACGCCATCGCGTCAGCCGGCGTTGCCTTTGCTGTGACCCGCTCCTGCGCCGAGGGCACGTCCACCATCTGCGGC TGTGACTCCCACCACAAAGGGCCTCCAGGAGAGGGCTGGAAATGGGGTGGATGCAGCGAGGATGCCGACTTTGGTGTGT TGGTGTCCCGGGAATTCGCAGACGCTCGAGAGAACCGTCCGGACGCGCGCTCGGCCATGAACAGACACAACAACGAGGC CGGGAGGACGACCATTCTGGACCACATGCACCTGAAGTGCAAGTGCCACGGGCTCTCGGGAAGCTGCGAAGTCAAGACT TGCTGGTGGGCACAGCCCGACTTTCGGGCCATCGGGGATTACCTGAAGGATAAATACGACAGTGCTTCCGAGATGGTGG TGGAGAAGCACCGGGAGTCCCGGGGTTGGGTAGAAACTCTTCGGGCTAAGTATGCTCTTTTCAAGCCACCAACAGAGCG GGATTTGGTTTACTATGAGAACTCCCCGAATTTCTGCGAGCCCAACCCAGAGACGGGCTCCTTTGGGACAAGGGACAGA ACGTGCAACGTCACCTCCCATGGGATTGATGGCTGTGACCTGCTGTGCTGCGGTCGGGGCCACAACACCAGGACTGAGA AAAGGAAGGAGAAGTGCCACTGCATCTTCCACTGGTGCTGCTATGTGAGCTGCCAGGAGTGCATACGTGTCTACGACGT CCATACCTGCAAGTAAGCGTTGTACGTCTCCAGCTGCTGGGAGGCTGATCCAGAGCAGGGCCAGGGGCTCCTATCCTCA GCACGGTGGCCTCACACTTCAGAGGATGGCATCAAGAAATCCGAGTGCTCTTGGCCCTACCCGCGCTCCTTGGCCACAT CCCTCCAAGTCTGGGGCTCGTGTTAACATGGAGCACTGACCATTCCTGGCAGGCTCCTCCACAGCAAGGACAACGTAAC AGAGTTCCAGTGCCAATTCTCACATGCCAGTGGTTTGACAGAGAAGTTGC
Citation	Chapman, S, Brown, R, Lees, L, Schoenwolf, G, Lumsden, A. Expression Analysis of Chick Wnt and Frizzled Genes and Selected Inhibitors in Early Chick Patterning. Dev Dyn. 2004 Mar;229(3):668-76.
Copyright	Wiley-Liss, Inc. 2004
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # AY069983).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

4-5

stage 4

stage 5

Primitive Streak

Entry 3

GEISHA Id	Wnt3.Chapman.2008	Data Source	Direct Submission
Complete cDNA Template Probe	show GCTGGAACTGCACCACCATCGATGACAGCCTGGCCATCTTTGGGCCTGTCCTGGACAAAGCCACACGGGAGTCTGCGTT TGTCCACGCCATCGCGTCAGCCGGCGTTGCCTTTGCTGTGACCCGCTCCTGCGCCGAGGGCACGTCCACCATCTGCGGC TGTGACTCCCACCACAAAGGGCCTCCAGGAGAGGGCTGGAAATGGGGTGGATGCAGCGAGGATGCCGACTTTGGTGTGT TGGTGTCCCGGGAATTCGCAGACGCTCGAGAGAACCGTCCGGACGCGCGCTCGGCCATGAACAGACACAACAACGAGGC CGGGAGGACGACCATTCTGGACCACATGCACCTGAAGTGCAAGTGCCACGGGCTCTCGGGAAGCTGCGAAGTCAAGACT TGCTGGTGGGCACAGCCCGACTTTCGGGCCATCGGGGATTACCTGAAGGATAAATACGACAGTGCTTCCGAGATGGTGG TGGAGAAGCACCGGGAGTCCCGGGGTTGGGTAGAAACTCTTCGGGCTAAGTATGCTCTTTTCAAGCCACCAACAGAGCG GGATTTGGTTTACTATGAGAACTCCCCGAATTTCTGCGAGCCCAACCCAGAGACGGGCTCCTTTGGGACAAGGGACAGA ACGTGCAACGTCACCTCCCATGGGATTGATGGCTGTGACCTGCTGTGCTGCGGTCGGGGCCACAACACCAGGACTGAGA AAAGGAAGGAGAAGTGCCACTGCATCTTCCACTGGTGCTGCTATGTGAGCTGCCAGGAGTGCATACGTGTCTACGACGT CCATACCTGCAAGTAAGCGTTGTACGTCTCCAGCTGCTGGGAGGCTGATCCAGAGCAGGGCCAGGGGCTCCTATCCTCA GCACGGTGGCCTCACACTTCAGAGGATGGCATCAAGAAATCCGAGTGCTCTTGGCCCTACCCGCGCTCCTTGGCCACAT CCCTCCAAGTCTGGGGCTCGTGTTAACATGGAGCACTGACCATTCCTGGCAGGCTCCTCCACAGCAAGGACAACGTAAC AGAGTTCCAGTGCCAATTCTCACATGCCAGTGGTTTGACAGAGAAGTTGC
Comments	Images Provided by Susan Chapman.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

1-3

stage 3

Primitive Streak

7-12

stage 8

stage 9

stage 10

stage 11

stage 12

Central Nervous System
Forebrain
Primitive Streak
Tail
Unlabeled

Entry 4

GEISHA Id	Wnt3.Quinlan.2009	Data Source	Publication
Complete cDNA Template Probe	show GCTGGAACTGCACCACCATCGATGACAGCCTGGCCATCTTTGGGCCTGTCCTGGACAAAGCCACACGGGAGTCTGCGTT TGTCCACGCCATCGCGTCAGCCGGCGTTGCCTTTGCTGTGACCCGCTCCTGCGCCGAGGGCACGTCCACCATCTGCGGC TGTGACTCCCACCACAAAGGGCCTCCAGGAGAGGGCTGGAAATGGGGTGGATGCAGCGAGGATGCCGACTTTGGTGTGT TGGTGTCCCGGGAATTCGCAGACGCTCGAGAGAACCGTCCGGACGCGCGCTCGGCCATGAACAGACACAACAACGAGGC CGGGAGGACGACCATTCTGGACCACATGCACCTGAAGTGCAAGTGCCACGGGCTCTCGGGAAGCTGCGAAGTCAAGACT TGCTGGTGGGCACAGCCCGACTTTCGGGCCATCGGGGATTACCTGAAGGATAAATACGACAGTGCTTCCGAGATGGTGG TGGAGAAGCACCGGGAGTCCCGGGGTTGGGTAGAAACTCTTCGGGCTAAGTATGCTCTTTTCAAGCCACCAACAGAGCG GGATTTGGTTTACTATGAGAACTCCCCGAATTTCTGCGAGCCCAACCCAGAGACGGGCTCCTTTGGGACAAGGGACAGA ACGTGCAACGTCACCTCCCATGGGATTGATGGCTGTGACCTGCTGTGCTGCGGTCGGGGCCACAACACCAGGACTGAGA AAAGGAAGGAGAAGTGCCACTGCATCTTCCACTGGTGCTGCTATGTGAGCTGCCAGGAGTGCATACGTGTCTACGACGT CCATACCTGCAAGTAAGCGTTGTACGTCTCCAGCTGCTGGGAGGCTGATCCAGAGCAGGGCCAGGGGCTCCTATCCTCA GCACGGTGGCCTCACACTTCAGAGGATGGCATCAAGAAATCCGAGTGCTCTTGGCCCTACCCGCGCTCCTTGGCCACAT CCCTCCAAGTCTGGGGCTCGTGTTAACATGGAGCACTGACCATTCCTGGCAGGCTCCTCCACAGCAAGGACAACGTAAC AGAGTTCCAGTGCCAATTCTCACATGCCAGTGGTTTGACAGAGAAGTTGC
Citation	Quinlan R, Graf M, Mason I, Lumsden A, Kiecker C. Complex and dynamic patterns of Wnt pathway gene expression in the developing chick forebrain. Neural Dev. 2009 Sep 4;4:35.
Copyright	Copyright © 2009 Quinlan et al; licensee BioMed Central Ltd. [This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.]
Comments	Authors indicated probe sequence can be obtained from NCBI (acc # AY069983).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

13-18

stage 13

stage 16

Forebrain
Hindbrain
Isthmus/MHB
Midbrain

19-20

stage 20

Forebrain
Midbrain

Entry 5

GEISHA Id	WNT3.Sienknecht.2009	Data Source	Publication
Complete cDNA Template Probe	show `AGTGCAAGTGCCACGGGCTCTCGGGAAGCTGCGAGGTCAAGACTTGCTGGTGGGCACAGCCCGACTTTCGGGCCATCGG GGATTACCTGAAGGATAAATACGACAGTGCTTCCGAGATGGTGGTGGAGAAGCACCGGGAGTCCCGGGGTTGGGTAGAA ACTCTTCGGGCTAAGTATGCTCTTTTCAAGCCACCAACAGAGCGGGATTTGGTTTACTATGAGAACTCCCCGAATTTCT GCGAGCCCAACCCAGAGACGGGCTCCTTTGGGACAAGGGACAGAACGTGCAACGTCACCTCCCATGGGATTGATGGCTG TGACCTGCTGTGCTGCGGTCGGGGCCACAACACCAGGACTGAGAAAAGGAAGGAGAAGTGCCACTGCATCTTCCACTGG TGCTGCTATGTGAGCTGCC`
Citation	Sienknecht UJ, Fekete DM. Mapping of Wnt, frizzled, and Wnt inhibitor gene expression domains in the avian otic primordium. J Comp Neurol. 2009 Dec 20;517(6):751-64.
Copyright	Copyright © (2002 Wiley-Liss); This material is used by permission of Wiley-Liss, Inc., a subsidiary of John Wiley & Sons, Inc.
Comments	Accession # given in the paper.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

19-23

stage 20

stage 23

Ear/Otic Placode

Entry 6

GEISHA Id	WNT3.Robertson.2004	Data Source	Publication
Complete cDNA Template Probe	show GCTGGAACTGCACCACCATCGATGACAGCCTGGCCATCTTTGGGCCTGTCCTGGACAAAGCCACACGGGAGTCTGCGTT TGTCCACGCCATCGCGTCAGCCGGCGTTGCCTTTGCTGTGACCCGCTCCTGCGCCGAGGGCACGTCCACCATCTGCGGC TGTGACTCCCACCACAAAGGGCCTCCAGGAGAGGGCTGGAAATGGGGTGGATGCAGCGAGGATGCCGACTTTGGTGTGT TGGTGTCCCGGGAATTCGCAGACGCTCGAGAGAACCGTCCGGACGCGCGCTCGGCCATGAACAGACACAACAACGAGGC CGGGAGGACGACCATTCTGGACCACATGCACCTGAAGTGCAAGTGCCACGGGCTCTCGGGAAGCTGCGAAGTCAAGACT TGCTGGTGGGCACAGCCCGACTTTCGGGCCATCGGGGATTACCTGAAGGATAAATACGACAGTGCTTCCGAGATGGTGG TGGAGAAGCACCGGGAGTCCCGGGGTTGGGTAGAAACTCTTCGGGCTAAGTATGCTCTTTTCAAGCCACCAACAGAGCG GGATTTGGTTTACTATGAGAACTCCCCGAATTTCTGCGAGCCCAACCCAGAGACGGGCTCCTTTGGGACAAGGGACAGA ACGTGCAACGTCACCTCCCATGGGATTGATGGCTGTGACCTGCTGTGCTGCGGTCGGGGCCACAACACCAGGACTGAGA AAAGGAAGGAGAAGTGCCACTGCATCTTCCACTGGTGCTGCTATGTGAGCTGCCAGGAGTGCATACGTGTCTACGACGT CCATACCTGCAAGTAAGCGTTGTACGTCTCCAGCTGCTGGGAGGCTGATCCAGAGCAGGGCCAGGGGCTCCTATCCTCA GCACGGTGGCCTCACACTTCAGAGGATGGCATCAAGAAATCCGAGTGCTCTTGGCCCTACCCGCGCTCCTTGGCCACAT CCCTCCAAGTCTGGGGCTCGTGTTAACATGGAGCACTGACCATTCCTGGCAGGCTCCTCCACAGCAAGGACAACGTAAC AGAGTTCCAGTGCCAATTCTCACATGCCAGTGGTTTGACAGAGAAGTTGC
Citation	Robertson CP, Braun MM, Roelink H. Sonic hedgehog patterning in chick neural plate is antagonized by a Wnt3-like signal. Dev Dyn. 2004 Mar;229(3):510-9.
Copyright	Copyright © 2004 Wiley-Liss, Inc.
Comments	Authors indicated probe was 1100 cDNA submitted as NCBI Acc# AY069983.1.