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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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WNT2
Wnt family member 2

Gene

Official Symbol	WNT2
Official Full Name	Wnt family member 2
CGNC ID	7121
also known as	protein Wnt-2\|wingless-type MMTV integration site family member 2, WNT2
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC

Sequence Information

Genomic
RNA	XM_416013
Polypeptide	XP_416013

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	7472	ENSG00000105989		MIM:147870
Mouse	22413	ENSMUSG00000010797	All phenotypic alleles (4):Targeted, knock-out(1) Targeted, other(3)	MGI:98954
Xenopus	100038261, 100491761, 378566, 378675			486594, 960147
Zebrafish	359837, 30127	ENSDARG00000005050, ENSDARG00000041117	ZDB-GENE-030717-2, ZDB-GENE-980526-416	ZFIN:ZDB-GENE-030717-2, ZFIN:ZDB-GENE-980526-416

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	417769
Ensembl Gene
KEGG	gga:417769

Entry 1

GEISHA Id	WNT2.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	TTATAAAAGCTTGCGGCCGCAGAATATATCTGGTGGTGGTCTCTTCCCC
Reverse cDNA Template Primer	GCTCTAGAAATTAACCCTCACTAAAGGGCCTACATCCCTGTCCCTGATAC	cDNA Template Length	834
Forward cDNA Template Probe	show TTCTGACCGTTCGAAGTANTNAGGAAGCTGTCAAGTATCCACGTCATTCTTAGTTGGCTTCTTAAATCTCTTATTACCC ACAGTTGAAACCCGCTGCCACTCTTGATTCATGACCACCTGAATCGCTCCATTGTATTTCTTCCACAGATAATCTCCTG TTTTCCTAAAGTCCGCAATGGCCAGCCAACAGGTCCATAGAGTGCATGATCCACTCACACCGTGACATTTGCACTCCTG TTTCAAAAACCGCTTCACGGCCTTCCTTCCTGCACGGCTGTTGTGGAGGTTCAGCAGCGCCCTGGCGTCCTTCCCTTTC CTTTCCTTGGCATCCACGAAGGCACTGGCGAACTTAACGCCATAATCAATGTTGTCACTGCAGCCCCCCCAGTCGAAGC GGCCCTTGCTGTCCTTGGCAGATCCCTTCATCTCAGGGTCACAGGAGCAGGACTTCAGCTCTCCCTGGCTGCACTGCCC TCGTGATGGCAAGCACAACACCAGCAGAGGAGATGGCGTGAACGAACGCACACTCCCGGATGCCACCACGATGAAGCGA CTCGCGGAGTCGCCCACAGCACCACGAGGGCAAGAGACCACCACCAGATATATTCTGCTTTCCTGAGGGTTAATTTATA TTAGCAAA
Comments	Low level expression detected. Going to run with higher probe concentration.

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

stage 5

stage 6

Lateral Plate Mesoderm
Paraxial Mesoderm

Low level expression detected.
Low level expression detected.

7-12

stage 7

stage 8

stage 12

Neural Plate/Tube
Paraxial Mesoderm
Sinus Venosus

Low level expression detected.

13-18

stage 13

stage 18

Foregut
Neural Plate/Tube

19-24

stage 20

stage 23

stage 24

Aorta
Eye
Foregut
Gut
Mesonephros
Notochord
Pharyngeal Arches and Clefts
Sclerotome

stage 25

Eye
Gut
Mesonephros
Pharyngeal Arches and Clefts

Entry 2

GEISHA Id	Wnt2.Fokina.2006	Data Source	Publication
Complete cDNA Template Probe	show CTCCGCTGGCGTTGTGTTTGCCATCACGAGGGCGTGCAGCCAGGGAGAGCTGAAGTCCTGCTCCTGTGACCCCGAGAAG AAGGGCTCTGCCAAGGACAGCAAGGGCCGCTTCGACTGGGGCGGCTGCAGCGACAACATTGACTATGGCGTTAAGTTCG CCAGGGCCTTCGTGGATGCCAAGGAAAGGAAAGGGAAGGACGCCAGGGCGCTGATGAACCTCCACAACAACCGTGCAGG AAGGAAGGCCGTGAAGCGGTTTTTGAAACAGGAGTGCAAATGTCACGGTGTGAGTGGATCATGCACTCTAAGGACCTGT TGGCTGGCCATGGCAGACTTTAGGAAAACAGGAGATTATCTGTGGAAGAAATACAATGGAGCGATTCAGGTGGTCATGA ATCAAGATGGCACGGGTTTCACTGTGGCTAATAAGAGATTTAAGAAGCCAACTAAGAATGACCTGGTATACTTTGAAAG CTCTCCAGACTACTGTATCAGGGACAGGGATGTAGGCTCTCCGGGGACGGCCGGCCGGGTGTGCAACCAGACGTCCCGC GGCATGGACAGCTGTGAGGTGATGTGCTGCGGCCGTGGCTACGACACGTTGCGCGTCAGCAGGATGACCAAATGCGAGT GCAAGTTCCACTGGTGCTGCGCGGTGCGCTGCCAGGACTGCCTGGAGGAGGTGGACATCCACACGTGCAAGGCGCCCAA GGCTGCGGGCTGGGCCTCCCGGACATGATGTGTGGTGCTGGTCTGCG
Citation	Fokina VM, Frolova EI. Expression patterns of Wnt genes during development of an anterior part of the chicken eye. Dev Dyn. 2006 Feb;235(2):496-505.
Copyright	Copyright © 2008 Wiley-Liss, Inc.
Comments	Sequence from Accession number identified in paper:AY753287.

Stage

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Location (click to highlight)

Comments (click to highlight)

19-24

stage 23

Eye
Gut
Lens
Retina

25-29

stage 26

stage 29

Eye
Lens
Retina

Entry 3

GEISHA Id	Wnt2.Theodosiou.2003	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show CTCCGCTGGCGTTGTGTTTGCCATCACGAGGGCGTGCAGCCAGGGAGAGCTGAAGTCCTGCTCCTGTGACCCCGAGAAG AAGGGCTCTGCCAAGGACAGCAAGGGCCGCTTCGACTGGGGCGGCTGCAGCGACAACATTGACTATGGCGTTAAGTTCG CCAGGGCCTTCGTGGATGCCAAGGAAAGGAAAGGGAAGGACGCCAGGGCGCTGATGAACCTCCACAACAACCGTGCAGG AAGGAAGGCCGTGAAGCGGTTTTTGAAACAGGAGTGCAAATGTCACGGTGTGAGTGGATCATGCACTCTAAGGACCTGT TGGCTGGCCATGGCAGACTTTAGGAAAACAGGAGATTATCTGTGGAAGAAATACAATGGAGCGATTCAGGTGGTCATGA ATCAAGATGGCACGGGTTTCACTGTGGCTAATAAGAGATTTAAGAAGCCAACTAAGAATGACCTGGTATACTTTGAAAG CTCTCCAGACTACTGTATCAGGGACAGGGATGTAGGCTCTCCGGGGACGGCCGGCCGGGTGTGCAACCAGACGTCCCGC GGCATGGACAGCTGTGAGGTGATGTGCTGCGGCCGTGGCTACGACACGTTGCGCGTCAGCAGGATGACCAAATGCGAGT GCAAGTTCCACTGGTGCTGCGCGGTGCGCTGCCAGGACTGCCTGGAGGAGGTGGACATCCACACGTGCAAGGCGCCCAA GGCTGCGGGCTGGGCCTCCCGGACATGATGTGTGGTGCTGGTCTGCG
Comments	Authors indicated probe was 400 bp. As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #AY753287).