GEISHA - A Chicken Embryo Gene Expression Database
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VAX1
ventral anterior homeobox 1

Gene
Official SymbolVAX1
Official Full Nameventral anterior homeobox 1
CGNC ID49384
also known ascVAX, ventral anterior homeobox 1|Vax, Ventral anterior homeobox 1
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_204799
PolypeptideNP_990130
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.321
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human11023ENSG00000148704MIM:604294
Mouse22326All phenotypic alleles (4):Targeted, knock-out(1) Targeted, other(3) MGI:1277163
Xenopus100486982, 378629, 373698478344
Zebrafish373870ENSDARG00000021916ZDB-GENE-030904-9ZFIN:ZDB-GENE-030904-9
Gene Ontology
Molecular Functionchromatin DNA binding, sequence-specific DNA binding transcription factor activity, more...transcription regulatory region sequence-specific DNA binding
Biological Processaxon guidance, brain development, camera-type eye development, more...negative regulation of neuroblast proliferation, negative regulation of transcription from RNA polymerase II promoter, neuron migration, palate development, skeletal muscle cell differentiation, transcription, DNA-templated
Cellular Componentnucleus
Links to other databases
Entrez Gene395582
Ensembl Gene
KEGGgga:395582

Entry 1

GEISHA IdVax.Canto-Soler.2006Data SourcePublication
Complete cDNA Template Probeshow
GTTGTTGCTTTTTTTGTTTTCTTTTTATTGCACTACATGTTTGGGAAACAAGACAAAATGGACGTTAGATGCAGCACAG
AGACTGAAGCCAATCGGGTCTCGAAGAACGGACACAAGGAGGGCAAGGACAGCAAAGGGGCTGAAGGAAATATCTCTAC
TTCTTTTCTGAAGGAGCAACAAGGGACTTTTTCTGCCTCCGCAGCTACCGAAGACTGTAACAAAAGTAAATCTGGTTCG
GCGGACCCGGACTACTGCAGGAGGATCCTGGTCAGAGATGCCAAAGGTTCCATCCGAGAGATCATCCTGCCCAAAGGCC
TCGATTTGGACCGTCCCAAGCGGACCCGCACCTCCTTCACGGCCGAGCAGCTCTACCGCCTGGAGATGGAGTTCCAGCG
GTGCCAGTACGTGGTGGGGCGGGAGCGCACCGAGCTGGCGCGGCAGCTCAACCTCTCCGAGACTCAGGTAAAGGTGTGG
TTCCAGAACCGACGCACCAAGCAGAAAAAGGACCAGGGCAAAGACTCGGAGCTGCGTTCGGTGGTATCCGAGACCGCCG
CCACCTGCAGCGTCCTGCGGCTGCTGGAGCAGGGCCGCCTGCTCTCCCCGCCTGGGCTGCCCGGCCTCCTTGCCGCCCT
GTGCCAGCGGAACGCTGGGCTCGGCGCTGCGGGGCCCCGGCCTCTGGCTGCGGGCAGCGGCACGGCGGCGGCGGCGGCG
GCGGCGGCGGCTCCGGCCGGGGGATCCCCGCACCCCCCGAGCGCCGGCACCGCGGCGGGGCCGCCCCCTCCGGCAGCGC
TGCACGGAACGGCCGCCGCCGCCGCCGGGCACGGGCTCTTCGGGCTGCCGGTGCCCACGCTGCTGGGCTCGGTGGCGGG
GCGGCTCTCCTCCGCGCCGCTGGCCGTGGCGGGCTCGCTGGCGGGCAACTTGCAGGAACTGTCGGCCCGCTACCTGAGC
TCGTCCGCCTTCGAGCCCTACTCCCGGACCAACAATAAAGAAAGCGCTGAGAAAAAAGCACTGGACTGAGAAAAAAGCA
CTGGACTGA
CitationCanto-Soler MV, Adler R. Optic cup and lens development requires Pax6 expression in the early optic vesicle during a narrow time window. Dev Biol. 2006 Jun 1;294(1):119-32. Epub 2006 Mar 27.
CopyrightReprinted from Developmental Biology, 294, Issue 1, M. Valeria Canto-Soler and Ruben Adler, Optic cup and lens development requires Pax6 expression in the early optic vesicle during a narrow time window, 119-132, 2006, with permission from Elsevier. Copyright © 2006 Elsevier B.V. All rights
CommentsProbes were generated from cDNAs generously provided by the following investigators: cVax (Constance Cepko, Harvard Medical School, Boston, MA). ." As information provided was insufficient to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_204799)
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 11
Retina
 
13-18
stage 18
Retina
 

Entry 2

GEISHA IdVAX.Peters.2002Data SourcePublication
Complete cDNA Template Probeshow
GTTGTTGCTTTTTTTGTTTTCTTTTTATTGCACTACATGTTTGGGAAACAAGACAAAATGGACGTTAGATGCAGCACAG
AGACTGAAGCCAATCGGGTCTCGAAGAACGGACACAAGGAGGGCAAGGACAGCAAAGGGGCTGAAGGAAATATCTCTAC
TTCTTTTCTGAAGGAGCAACAAGGGACTTTTTCTGCCTCCGCAGCTACCGAAGACTGTAACAAAAGTAAATCTGGTTCG
GCGGACCCGGACTACTGCAGGAGGATCCTGGTCAGAGATGCCAAAGGTTCCATCCGAGAGATCATCCTGCCCAAAGGCC
TCGATTTGGACCGTCCCAAGCGGACCCGCACCTCCTTCACGGCCGAGCAGCTCTACCGCCTGGAGATGGAGTTCCAGCG
GTGCCAGTACGTGGTGGGGCGGGAGCGCACCGAGCTGGCGCGGCAGCTCAACCTCTCCGAGACTCAGGTAAAGGTGTGG
TTCCAGAACCGACGCACCAAGCAGAAAAAGGACCAGGGCAAAGACTCGGAGCTGCGTTCGGTGGTATCCGAGACCGCCG
CCACCTGCAGCGTCCTGCGGCTGCTGGAGCAGGGCCGCCTGCTCTCCCCGCCTGGGCTGCCCGGCCTCCTTGCCGCCCT
GTGCCAGCGGAACGCTGGGCTCGGCGCTGCGGGGCCCCGGCCTCTGGCTGCGGGCAGCGGCACGGCGGCGGCGGCGGCG
GCGGCGGCGGCTCCGGCCGGGGGATCCCCGCACCCCCCGAGCGCCGGCACCGCGGCGGGGCCGCCCCCTCCGGCAGCGC
TGCACGGAACGGCCGCCGCCGCCGCCGGGCACGGGCTCTTCGGGCTGCCGGTGCCCACGCTGCTGGGCTCGGTGGCGGG
GCGGCTCTCCTCCGCGCCGCTGGCCGTGGCGGGCTCGCTGGCGGGCAACTTGCAGGAACTGTCGGCCCGCTACCTGAGC
TCGTCCGCCTTCGAGCCCTACTCCCGGACCAACAATAAAGAAAGCGCTGAGAAAAAAGCACTGGACTGAGAAAAAAGCA
CTGGACTGA
CitationPeters MA, Cepko CL (2002). The dorsal-ventral axis of the neural retina is divided into multiple domains of restricted gene expression which exhibit features of lineage compartments. Dev Biol. 2002 Nov 1;251(1):59-73.
Copyright"Reprinted from Developmental Biology, 251(1), Peters MA, Cepko CL, The dorsal-ventral axis of the neural retina is divided into multiple domains of restricted gene expression which exhibit features of lineage compartments, 59-73, Copyright (2002), with permission from Elsevier". Copyright © ( 2002) Elsevier B.V. All rights reserved.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 17
stage 18
stage 18
stage 18
Retina
double labeled
19-24
stage 19
stage 22
Retina
double labeled
31-44
stage 44
stage 44
  

Entry 3

GEISHA IdVax.Zhang.2001Data SourcePublication
Complete cDNA Template Probeshow
GTTGTTGCTTTTTTTGTTTTCTTTTTATTGCACTACATGTTTGGGAAACAAGACAAAATGGACGTTAGATGCAGCACAG
AGACTGAAGCCAATCGGGTCTCGAAGAACGGACACAAGGAGGGCAAGGACAGCAAAGGGGCTGAAGGAAATATCTCTAC
TTCTTTTCTGAAGGAGCAACAAGGGACTTTTTCTGCCTCCGCAGCTACCGAAGACTGTAACAAAAGTAAATCTGGTTCG
GCGGACCCGGACTACTGCAGGAGGATCCTGGTCAGAGATGCCAAAGGTTCCATCCGAGAGATCATCCTGCCCAAAGGCC
TCGATTTGGACCGTCCCAAGCGGACCCGCACCTCCTTCACGGCCGAGCAGCTCTACCGCCTGGAGATGGAGTTCCAGCG
GTGCCAGTACGTGGTGGGGCGGGAGCGCACCGAGCTGGCGCGGCAGCTCAACCTCTCCGAGACTCAGGTAAAGGTGTGG
TTCCAGAACCGACGCACCAAGCAGAAAAAGGACCAGGGCAAAGACTCGGAGCTGCGTTCGGTGGTATCCGAGACCGCCG
CCACCTGCAGCGTCCTGCGGCTGCTGGAGCAGGGCCGCCTGCTCTCCCCGCCTGGGCTGCCCGGCCTCCTTGCCGCCCT
GTGCCAGCGGAACGCTGGGCTCGGCGCTGCGGGGCCCCGGCCTCTGGCTGCGGGCAGCGGCACGGCGGCGGCGGCGGCG
GCGGCGGCGGCTCCGGCCGGGGGATCCCCGCACCCCCCGAGCGCCGGCACCGCGGCGGGGCCGCCCCCTCCGGCAGCGC
TGCACGGAACGGCCGCCGCCGCCGCCGGGCACGGGCTCTTCGGGCTGCCGGTGCCCACGCTGCTGGGCTCGGTGGCGGG
GCGGCTCTCCTCCGCGCCGCTGGCCGTGGCGGGCTCGCTGGCGGGCAACTTGCAGGAACTGTCGGCCCGCTACCTGAGC
TCGTCCGCCTTCGAGCCCTACTCCCGGACCAACAATAAAGAAAGCGCTGAGAAAAAAGCACTGGACTGAGAAAAAAGCA
CTGGACTGA
CitationZhang XM, Yang XJ (2001). Temporal and spatial effects of Sonic hedgehog signaling in chick eye morphogenesis. Dev Biol. 2001 May 15;233(2):271-90.
CopyrightCopyright © 2001 Academic Press. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204799).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 22
stage 22
stage 24
stage 24
Eye
Retina
ventral eye
ventral-central retina
ventral-peripheral retina

Entry 4

GEISHA IdVAX.Halilagic.2007Data SourcePublication
Complete cDNA Template Probeshow
GTTGTTGCTTTTTTTGTTTTCTTTTTATTGCACTACATGTTTGGGAAACAAGACAAAATGGACGTTAGATGCAGCACAG
AGACTGAAGCCAATCGGGTCTCGAAGAACGGACACAAGGAGGGCAAGGACAGCAAAGGGGCTGAAGGAAATATCTCTAC
TTCTTTTCTGAAGGAGCAACAAGGGACTTTTTCTGCCTCCGCAGCTACCGAAGACTGTAACAAAAGTAAATCTGGTTCG
GCGGACCCGGACTACTGCAGGAGGATCCTGGTCAGAGATGCCAAAGGTTCCATCCGAGAGATCATCCTGCCCAAAGGCC
TCGATTTGGACCGTCCCAAGCGGACCCGCACCTCCTTCACGGCCGAGCAGCTCTACCGCCTGGAGATGGAGTTCCAGCG
GTGCCAGTACGTGGTGGGGCGGGAGCGCACCGAGCTGGCGCGGCAGCTCAACCTCTCCGAGACTCAGGTAAAGGTGTGG
TTCCAGAACCGACGCACCAAGCAGAAAAAGGACCAGGGCAAAGACTCGGAGCTGCGTTCGGTGGTATCCGAGACCGCCG
CCACCTGCAGCGTCCTGCGGCTGCTGGAGCAGGGCCGCCTGCTCTCCCCGCCTGGGCTGCCCGGCCTCCTTGCCGCCCT
GTGCCAGCGGAACGCTGGGCTCGGCGCTGCGGGGCCCCGGCCTCTGGCTGCGGGCAGCGGCACGGCGGCGGCGGCGGCG
GCGGCGGCGGCTCCGGCCGGGGGATCCCCGCACCCCCCGAGCGCCGGCACCGCGGCGGGGCCGCCCCCTCCGGCAGCGC
TGCACGGAACGGCCGCCGCCGCCGCCGGGCACGGGCTCTTCGGGCTGCCGGTGCCCACGCTGCTGGGCTCGGTGGCGGG
GCGGCTCTCCTCCGCGCCGCTGGCCGTGGCGGGCTCGCTGGCGGGCAACTTGCAGGAACTGTCGGCCCGCTACCTGAGC
TCGTCCGCCTTCGAGCCCTACTCCCGGACCAACAATAAAGAAAGCGCTGAGAAAAAAGCACTGGACTGAGAAAAAAGCA
CTGGACTGA
CitationHalilagic A, Ribes V, Ghyselinck NB, Zile MH, Dollé P, Studer M. Retinoids control anterior and dorsal properties in the developing forebrain. Dev Bio 2007 Mar 1;303(1):244-58
CopyrightReprinted with permission from Elsevier. Copyright © 2007 Elsevier B.V. All rights reserved.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_204799.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19
stage 19
stage 19
Eye
Head Mesenchyme
 

Entry 5

GEISHA IdcVAX.Schulte.2005Data SourcePublication
Complete cDNA Template Probeshow
GTTGTTGCTTTTTTTGTTTTCTTTTTATTGCACTACATGTTTGGGAAACAAGACAAAATGGACGTTAGATGCAGCACAG
AGACTGAAGCCAATCGGGTCTCGAAGAACGGACACAAGGAGGGCAAGGACAGCAAAGGGGCTGAAGGAAATATCTCTAC
TTCTTTTCTGAAGGAGCAACAAGGGACTTTTTCTGCCTCCGCAGCTACCGAAGACTGTAACAAAAGTAAATCTGGTTCG
GCGGACCCGGACTACTGCAGGAGGATCCTGGTCAGAGATGCCAAAGGTTCCATCCGAGAGATCATCCTGCCCAAAGGCC
TCGATTTGGACCGTCCCAAGCGGACCCGCACCTCCTTCACGGCCGAGCAGCTCTACCGCCTGGAGATGGAGTTCCAGCG
GTGCCAGTACGTGGTGGGGCGGGAGCGCACCGAGCTGGCGCGGCAGCTCAACCTCTCCGAGACTCAGGTAAAGGTGTGG
TTCCAGAACCGACGCACCAAGCAGAAAAAGGACCAGGGCAAAGACTCGGAGCTGCGTTCGGTGGTATCCGAGACCGCCG
CCACCTGCAGCGTCCTGCGGCTGCTGGAGCAGGGCCGCCTGCTCTCCCCGCCTGGGCTGCCCGGCCTCCTTGCCGCCCT
GTGCCAGCGGAACGCTGGGCTCGGCGCTGCGGGGCCCCGGCCTCTGGCTGCGGGCAGCGGCACGGCGGCGGCGGCGGCG
GCGGCGGCGGCTCCGGCCGGGGGATCCCCGCACCCCCCGAGCGCCGGCACCGCGGCGGGGCCGCCCCCTCCGGCAGCGC
TGCACGGAACGGCCGCCGCCGCCGCCGGGCACGGGCTCTTCGGGCTGCCGGTGCCCACGCTGCTGGGCTCGGTGGCGGG
GCGGCTCTCCTCCGCGCCGCTGGCCGTGGCGGGCTCGCTGGCGGGCAACTTGCAGGAACTGTCGGCCCGCTACCTGAGC
TCGTCCGCCTTCGAGCCCTACTCCCGGACCAACAATAAAGAAAGCGCTGAGAAAAAAGCACTGGACTGAGAAAAAAGCA
CTGGACTGA
CitationSchulte D, Peters MA, Sen J, Cepko CL. The rod photoreceptor pattern is set at the optic vesicle stage and requires spatially restricted cVax expression. J Neurosci. 2005 Mar 16;25(11):2823-31.
Copyright Copyright © 2012 by the Society for Neuroscience
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI NM_204799.1
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-16
stage 16
stage 16
stage 16
Eye
Face Mesenchyme
 

Entry 6

GEISHA IdcVAX.Smith.2018Data SourcePublication
Complete cDNA Template Probeshow
ATGTTTGGGAAACAAGACAAAATGGACGTTAGATGCAGCACAGAGACTGAAGCCAATCGGGTCTCGAAGAACGGACACA
AGGAGGGCAAGGACAGCAAAGGGGCTGAAGGAAATATCTCTACTTCTTTTCTGAAGGAGCAACAAGGGACTTTTTCTGC
CTCCGCAGCTACCGAAGACTGTAACAAAAGTAAATCTGGTTCGGCGGACCCGGACTACTGCAGGAGGATCCTGGTCAGA
GATGCCAAAGGTTCCATCCGAGAGATCATCCTGCCCAAAGGCCTCGATTTGGACCGTCCCAAGCGGACCCGCACCTCCT
TCACGGCCGAGCAGCTCTACCGCCTGGAGATGGAGTTCCAGCGGTGCCAGTACGTGGTGGGGCGGGAGCGCACCGAGCT
GGCGCGGCAGCTCAACCTCTCCGAGACTCAGGTAAAGGTGTGGTTCCAGAACCGACGCACCAAGCAGAAAAAGGACCAG
GGCAAAGACTCGGAGCTGCGTTCGGTGGTATCCGAGACCGCCGCCACCTGCAGCGTCCTGCGGCTGCTGGAGCAGGGCC
GCCTGCTCTCCCCGCCTGGGCTGCCCGGCCTCCTGCCGCCCTGTGCCAGCGGAGCGCTGGGCTCGGCGCTGCGGGGCCC
CGGCCTGGCTGCGGGCAGCGGCACGGCGGCGGCGGCGGCGGCGGCGGCGGCTCCGGCCGGGGGATCCCCGCACCCCCCG
AGCGCCGGCACCGCGGCGGGGCCGCCCCCTCCGGCAGCGCTGCACGGAGCGGCCGCCGCCGCCGCCGGGCACGGGCTCT
TCGGGCTGCCGGTGCCCACGCTGCTGGGCTCGGTGGCGGGGCGGCTCTCCTCCGCGCCGCTGGCCGTGGCGGGCTCGCT
GGCGGGCAACTTGCAGGAACTGTCGGCCCGCTACCTGAGCTCGTCCGCCTTCGAGCCCTACTCCCGGACCAACAATAAA
GAAAGCGCTGAGAAAAAAGCACTGGACTGA
CitationJonathan N Smith, Heather M Walker, Hannah Thompson, J Martin Collinson, Neil Vargesson, Lynda Erskine. Lens-regulated retinoic acid signalling controls expansion of the developing eye. Development. 2018 Oct 10;145(19):dev167171. DOI: 10.1242/dev.167171.
CopyrightCopyright © 2018. Published by The Company of Biologists Ltd.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204799.3). cVAX is Also known as VAX1.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-23
stage 23
Retina
 
all
 
  
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.321

Mouse

EmageMGI:1277163
EurexpressMGI:1277163
MGI GXDMGI:1277163

Frog

Xenbase478344

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-030904-9
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