GEISHA - A Chicken Embryo Gene Expression Database
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NGFR
nerve growth factor receptor

Gene
Official SymbolNGFR
Official Full Namenerve growth factor receptor
CGNC ID9493
also known astumor necrosis factor receptor superfamily member 16|NGF receptor|gp80-LNGFR|low affinity neurotrophin receptor p75NTR|low-affinity nerve growth factor receptor|nerve growth factor receptor (TNFR superfamily, member 16)|p75 ICD, Tumor necrosis factor receptor superfamily member 16 precursor, Low- affinity nerve growth factor receptor, NGF receptor, Gp80-LNGFR, p75 ICD, p75NTR, Low affinity neurotrophin receptor p75NTR
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Sequence Information
Genomic
RNANM_001146133
PolypeptideNP_001139605
Gene Expression
In Situ HybridizationGEISHA
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human4804ENSG00000064300MIM:162010
Mouse18053ENSMUSG00000000120All phenotypic alleles (6):Targeted, knock-out(2) Targeted, other(4) MGI:97323
Xenopus493361, 432338947582
Zebrafish100330017, 564338, 368715ENSDARG00000089223ZDB-GENE-070606-2, ZDB-GENE-050928-1ZFIN:ZDB-GENE-070606-2, ZFIN:ZDB-GENE-050928-1
Gene Ontology
Molecular Function
Biological Processapoptotic process, cell differentiation, nervous system development, signal transduction
Cellular Componentintegral component of membrane
Links to other databases
Entrez Gene425805
Ensembl Gene
KEGGgga:425805

Entry 1

GEISHA Idp75NTR.Okafuji.2005Data SourcePublication
Complete cDNA Template Probeshow
CGGGGGATGCGAGGCGGCCCCGGCGCACCATGGCCGGGTTCGTACCGCTGCTGCTGCTCCTGCTGCCGGCGGGACCCAC
CTGGGGCTCCAAGGAAAAGTGCTTGACCAAGATGTACACGACGAGCGGTGAGTGCTGCAAAGCCTGCAACCTGGGTGAG
GGCGTGGTGCAGCCCTGCGGGGTCAACCAGACCGTCTGCGAGCCCTGCCTGGACAGTGTGACCTACTCGGACACAGTGA
GTGCCACAGAACCGTGCAAGCCCTGCACACAGTGCGTGGGGCTGCACAGCATGTCTGCACCCTGCGTGGAGTCTGACGA
CGCCGTGTGCCGCTGCGCCTACGGCTACTTCCAGGATGAGCTGAGCGGGAGCTGCAAGGAGTGCAGCATCTGTGAGGTG
GGCTTTGGCCTCATGTTCCCCTGCCGGGACTCACAGGACACGGTCTGTGAGGAGTGCCCCGAGGGCACCTTCTCGGATG
AGGCCAATTTCGTGGATCCCTGCCTTCCCTGCACCATCTGCGAAGAGAACGAGGTGATGGTGAAGGAGTGCACGGCCAC
CTCCGATGCTGAGTGCAGAGCGCACCGCGGGCTGCTCGCTCACAGCATCGTGCCTGCAAGCTGA
CitationOkafuji T, Tanaka H. Expression pattern of LINGO-1 in the developing nervous system of the chick embryo. Gene Expr Patterns. 2005 Dec;6(1):57-62. Epub 2005 Jul 18.
CopyrightReprinted with permission from Elsevier. Copyright © 2005 Elsevier B.V. All rights reserved.
CommentsAuthors said: the template for the chick p75NTR probe was a 634-bp (8 bp of 5′-UTR+626 bp of ORF) fragment. The sequence below was obtained from NCBI (acc # XM_423516).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 19
stage 19
Central Nervous System
Forebrain
Hindbrain
Midbrain
Spinal Cord
Fig. 5 compares several genes.
25-27
stage 27
Spinal Cord
 

Entry 2

GEISHA IdNGFR.Hallböök.1990Data SourcePublication
Complete cDNA Template Probeshow
GCCGAGGCGGCGGGCGGCAGAGGGAGGGCAGCCCGGGGGATGCGAGGCGGCCCCGGCGCACCATGGCCGGGTTCGTACC
GCTGCTGCTGCTCCTGCTGCCGGCGGGACCCACCTGGGGCTCCAAGTGCTTGACTAAGATGTACACGACGAGCGGTGAG
TGCTGCAAAGCCTGCAACCTGGGTGAGGGCGTGGTGCAGCCCTGCGGGGTCAACCAGACCGTCTGCGAGCCCTGCCTGG
ACAGTGTGACCTACTCGGACACAGTGAGTGCCACAGAACCGTGCAAGCCCTGCACACAGTGCGTGGGGCTGCACAGCAT
GTCTGCACCCTGCGTGGAGTCTGACGACGCCGTGTGCCGCTGCGCCTACGGCTACTTCCAGGATGAGCTGAGCGGGAGC
TGCAAGGAGTGCAGCATCTGTGAGGTGGGCTTTGGCCTCATGTTCCCCTGCCGGGACTCACAGGACACGGTCTGTGAGG
AGTGCCCCGAGGGCACCTTCTCGGATGAGGCCAATTTCGTGGATCCCTGCCTTCCCTGCACCATCTGCGAAGAGAACGA
GGTGATGGTGAAGGAGTGCACGGCCACCTCCGATGCTGAGTGCAGAGACCTCCACCCACGCTGGACAACGCACACCCCA
TCCCTGGCGGGTTCTGACAGCCCCGAGCCAATCACCAGGGACCCCTTCAACACCGAGGGGATGGCCACCACCCTGGCAG
ACATTGTCACCACCGTCATGGGCAGCTCGCAGCCCGTCGTGAGCCGCGGCACCGCCGATAACCTCATCCCTGTGTACTG
CTCTATCCTGGCGGCCGTGGTGGTGGGGCTGGTGGCTTACATTGCCTTCAAAAGGTGGAACAGCTGCAAGCAGAACAAG
CAGGGAGCCAACAACCGCCCTGTGAACCAGACGCCTTCCCCAGAGGGGGAGAAGCTGCACAGCGACAGCGGCATCTCGG
TGGACAGCCAGAGCTTGCACGACCAGCAGCCGCCCAACCAGAGCACGCAGGGACCAGCACCAAAGGGAGATGGGAGCTT
GTACGCCAGCCTGCCGCCCAGCAAGCAGGAGGAGGTGGAGAAACTGCTGAGCAGCTCTGCGGAGGAGACGTGGCGGCAG
CTGGCCGGGGAGCTGGGCTACAAGGAGGACCTCATAGACTGCTTCACACGGGAGGAATCGCCCGCCCGAGCGCTGCTGG
CCGACTGGTCGGCCAAGGAGACGGCCACTCTCGACGCCCTCCTGGTGGCCCTGCGGAAGATCCAACGTGGGGACATCGC
TGAGAGCCTGTACAGCGAGTCCACCGCCACCTCACCCGTGTGAAGGGCGGCCCGGAGGGGGGAGGTGCAGCCGGGGGTC
CCCTGCCCGGCTGTCTC
CitationHallböök F, Ayer-Lelièvre C, Ebendal T, Persson H. Expression of nerve growth factor receptor mRNA during early development of the chicken embryo: emphasis on cranial ganglia. Development. 1990 Apr;108(4):693-704.
Copyright© The Company of Biologists Limited 1990
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 18
stage 18
stage 18
stage 18
stage 18
stage 18
stage 18
Ear/Otic Placode
Telencephalon
Visceral arches
25-30
stage 26
stage 26
stage 26
stage 26
stage 26
stage 26
stage 26
stage 26
stage 26
stage 26
stage 26
Cranial Ganglia
Spinal Cord
 
31-44
stage 38
stage 43
stage 44
stage 44
 Hatched P3

Entry 3

GEISHA Idp75NTR.Karlsson.1998Data SourceGEISHA ISH Analysis
Complete cDNA Template Probeshow
GCCGAGGCGGCGGGCGGCAGAGGGAGGGCAGCCCGGGGGATGCGAGGCGGCCCCGGCGCACCATGGCCGGGTTCGTACC
GCTGCTGCTGCTCCTGCTGCCGGCGGGACCCACCTGGGGCTCCAAGTGCTTGACTAAGATGTACACGACGAGCGGTGAG
TGCTGCAAAGCCTGCAACCTGGGTGAGGGCGTGGTGCAGCCCTGCGGGGTCAACCAGACCGTCTGCGAGCCCTGCCTGG
ACAGTGTGACCTACTCGGACACAGTGAGTGCCACAGAACCGTGCAAGCCCTGCACACAGTGCGTGGGGCTGCACAGCAT
GTCTGCACCCTGCGTGGAGTCTGACGACGCCGTGTGCCGCTGCGCCTACGGCTACTTCCAGGATGAGCTGAGCGGGAGC
TGCAAGGAGTGCAGCATCTGTGAGGTGGGCTTTGGCCTCATGTTCCCCTGCCGGGACTCACAGGACACGGTCTGTGAGG
AGTGCCCCGAGGGCACCTTCTCGGATGAGGCCAATTTCGTGGATCCCTGCCTTCCCTGCACCATCTGCGAAGAGAACGA
GGTGATGGTGAAGGAGTGCACGGCCACCTCCGATGCTGAGTGCAGAGACCTCCACCCACGCTGGACAACGCACACCCCA
TCCCTGGCGGGTTCTGACAGCCCCGAGCCAATCACCAGGGACCCCTTCAACACCGAGGGGATGGCCACCACCCTGGCAG
ACATTGTCACCACCGTCATGGGCAGCTCGCAGCCCGTCGTGAGCCGCGGCACCGCCGATAACCTCATCCCTGTGTACTG
CTCTATCCTGGCGGCCGTGGTGGTGGGGCTGGTGGCTTACATTGCCTTCAAAAGGTGGAACAGCTGCAAGCAGAACAAG
CAGGGAGCCAACAACCGCCCTGTGAACCAGACGCCTTCCCCAGAGGGGGAGAAGCTGCACAGCGACAGCGGCATCTCGG
TGGACAGCCAGAGCTTGCACGACCAGCAGCCGCCCAACCAGAGCACGCAGGGACCAGCACCAAAGGGAGATGGGAGCTT
GTACGCCAGCCTGCCGCCCAGCAAGCAGGAGGAGGTGGAGAAACTGCTGAGCAGCTCTGCGGAGGAGACGTGGCGGCAG
CTGGCCGGGGAGCTGGGCTACAAGGAGGACCTCATAGACTGCTTCACACGGGAGGAATCGCCCGCCCGAGCGCTGCTGG
CCGACTGGTCGGCCAAGGAGACGGCCACTCTCGACGCCCTCCTGGTGGCCCTGCGGAAGATCCAACGTGGGGACATCGC
TGAGAGCCTGTACAGCGAGTCCACCGCCACCTCACCCGTGTGAAGGGCGGCCCGGAGGGGGGAGGTGCAGCCGGGGGTC
CCCTGCCCGGCTGTCTC
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence was obtained from NCBI (NM_001146133.1). p75NTR is also known as: NGFR
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
31-43
stage 35
stage 35
stage 40
stage 43
Retina
 

Entry 4

GEISHA IdNGFR.Anderson.2019Data SourcePublication
Complete cDNA Template Probeshow
CAGGATGAGCTGAGCGGGAGCTGCAAGGAGTGCAGCATCTGTGAGGTGGGCTTTGGCCTCATGTTCCCCTGCCGGGACT
CACAGGACACGGTCTGTGAGGAGTGCCCCGAGGGCACCTTCTCGGATGAGGCCAATTTCGTGGATCCCTGCCTGCCCTG
CACCATCTGCGAAGAGAACGAGGTGATGGTGAAGGAGTGCAAGGCCACCTCCGATGCTGAGTGCAGAGACCTCCACCCA
CGCTGGACAACGCACACCCCATCCCTGGCGGGTTCTGACAGCCCCGAGCCAATCACCAGGACCCCTTCAACACCGAGGG
GGATGGCCACCACCCTGGCAGACATTGTCACCACCGTCATGGGCAGCTCGCAGCCCGTCGTGAGCCGCGGCACCGCCGA
TAACCTCATCCCTGTGTCCTTTTCTAATGTGTCTGTTGTACAAAGAACGTGAGTTTCTCCACTTGTTCCCCCGCTCCCT
TCTGTAATGCCAATGCCAGTTTATTAGAGAGTCTTACGGTGAAGAAATTGCCGTCGTAGAAGGAGTTGTGGGTGTGCTG
GGAGGGCTGAGCAGCATGAGGTGCGGGGGGCGTCTGCACGGGGGTCGGCTCGGCGGGTCCTATCGGTGTGTATCCGGTG
GGATTGCCAATAAAGAG
CitationAnderson C, Hill B, Lu HC, Moverley A, Yang Y, Oliveira NMM, Baldock RA, Stern CD. A 3D molecular atlas of the chick embryonic heart. Dev Biol. 2019 Dec 1;456(1):40-46. doi: 10.1016/j.ydbio.2019.07.003. Epub 2019 Jul 5.
CopyrightCopyright © 2019 Elsevier Inc. All rights reserved.
CommentsThe complete cDNA template sequence was obtained from the information from the publication as described in Anderson et al. 2019.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 12
stage 12
Heart
 

Mouse

EmageMGI:97323
MGI GXDMGI:97323

Frog

Xenbase947582

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-070606-2, ZDB-GENE-050928-1
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