GEISHA - A Chicken Embryo Gene Expression Database
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HMGB1
high mobility group box 1

Gene
Official SymbolHMGB1
Official Full Namehigh mobility group box 1
CGNC ID49444
also known asHMG-1, HMG1, high mobility group protein B1|high mobility group 1 protein|high mobility group protein 1|high mobility group protein HMG1, high-mobility group box 1
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_204902
PolypeptideNP_990233
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.4638
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly117294FBgn0011764
Human3146ENSG00000189403MIM:163905
Mouse434174MGI:3648695
Xenopus394834, 3805301001205
Zebrafish321622, 795095ENSDARG00000079772, ENSDARG00000030479ZDB-GENE-030131-341, ZDB-GENE-030131-8480ZFIN:ZDB-GENE-030131-341, ZFIN:ZDB-GENE-030131-8480
Gene Ontology
Molecular FunctionDNA binding, repressing transcription factor binding, more...sequence-specific DNA binding transcription factor activity
Biological Processbase-excision repair, DNA ligation, inflammatory response to antigenic stimulus, more...negative regulation of apoptotic cell clearance, negative regulation of RNA polymerase II transcriptional preinitiation complex assembly, positive regulation of apoptotic process, positive regulation of cysteine-type endopeptidase activity involved in apoptotic process, positive regulation of DNA binding, positive regulation of transcription from RNA polymerase II promoter, V(D)J recombination
Cellular Componentcell surface, condensed chromosome, extracellular space, transcriptional repressor complex
Links to other databases
Entrez Gene395724
Ensembl GeneENSGALG00000017082
KEGGgga:395724

Entry 1

GEISHA IdN01Data SourceGEISHA ISH Analysis
Complete cDNA Template Probeshow
GCTCACAGCCATTGCGGTGCATTGGGCTACACAGGGACCCAGGCAGCGCTGGGGCCGGGGCGAGCGGCCGGGCGGGCGT
CTCTGGGGCTGGGGGCCGAGCGAGGGCTGCGTGCCGACTCTGACGCGGAAAATCCTCAAAAATGGGCAAAGGTGATCCC
AAGAAGCCGAGAGGTAAAATGTCTTCATACGCCTTCTTTGTGCAAACCTGCCGGGAGGAGCACAAGAAGAAACATCCAG
ATGCTTCAGTGAACTTCTCAGAGTTCTCAAAAAAATGCTCAGAACGATGGAAGAGCTATGTCTTCTAAGGAGAAAGGGA
AGTTTGAAGATATGGCAAAGGCTGACAAGCTTCGGTATGAAAAAGAAATGAAAAACTATGTACCACCTAAGGGGGAAAC
AAAAAAGAAGTTCAAGGATCCAAATGCACCGAAGAGGCCTCCTTCGGCTTTTTTCTTGTTTTGCTCTGAGTTTCGTCCA
AAAATCAAAGGAGAACATCCCGGTCTGTCCATTGGGGACGTGGCAAAGAAACTGGGAGAGATGTGGAACAACACCGCAG
CAGATGATAAACAGCCTTACGAAAAGAAGGCTGCTAAGCTGAAGGAGAAGTATGAGAAGGATATTGCTGCATACCGGGC
CAAAGGGAAGGTTGATGCAGGCAAAAAAGTAGTTGCCAAGGCCGAGAAGAGCAAGAAGAAGAAGGAAGAAGAGGAAGAT
GAGGACGAAGACGAAGAGGATGAAGAGGACGAAGAAGAGGAAGAAGAGGAGGAGGAAGATGATGATGATGATGAATAAG
TCTCTTTTAGAGCAATTTCTTTCTTGTCTATAAAGCATTTAACCCCCCTGTACACAACTCACTCCTTTTAAAGAAAAAA
AAAATGAAATGTAAGGCTGTGTAAGATTTGTTTTTAAACTGTACAGTGTCTCTTTTTTTGTATAGTTAACACACTACCG
AATGTGTCTTTAGATAGCCCTGTCCTTAGTGGTATTTCAATGGCCACTAACCTTGCCTGGTACAGTGTGGGGGTTGTAA
ATTGGCATGGGAGTTTTAAAGCAGGTTCTTGTTGGTGCACAGCACAAATTAGTTCTATTTGGGGATGTAGTTCATTTCT
CATCTTCAGTTGTCTCTGATGCATCATAAAAATAATTGTCGTTCTGTTAATTGAATACCACTCTGTAATTGCAAAAAGG
AAGAAAAGAAAGTTGCAGCTGTTTTGTTGACATTCTGAATGCTTCTAAGTAAATACAATTTTTTTTATAAAAAAAAAAA
AAAAAAA
Commentsno specific expression detected, widespread
no images

Entry 2

GEISHA Idpgf2c.pk001.e16Data SourceGEISHA ISH Analysis
Forward cDNA Template Probeshow
CTCCAAGGATATTGCTGCATACCGGGCCAAAGGGAAGGTTGATGCAGGCAAAAAAGTAGTTGCCAAGGCCGAGAAGAGC
AAGAAGAAGAAGGAAGAAGAGGAAGATGAGGACGAAGACGAAGAGGATGAAGAGGACGAAGAAGAGGAAGAAGAGGAGG
AGGAAGATGATGATGATGATGAATAAGTCTCTTTTAGAGCAATTTCTTTCTTGTCTATAAAGCATTTAACCCCCCTGTA
CACAACTCACTCCTTTTAAAGAAAAAAAAAATGAAATGTAAGGCTGTGTAAGATTTGTTTTTAAACTGTACAGTGTCTC
TTTTTTTGTATAGTTAACACACTACCGAATGTGTCTTTAGATAGCCCTGTCCTTAGTGGTATTTCAATGGCCACTAACC
TTGCCTGGTACAGTGTGGGGGTTGTAAATTGGCATGGGAGTTTTAAAGCAGGTTCTTGTTGGTGCACAGCACAAATTAG
TTCTATTTGGGGATGTAGTTCATTTCTCATCTTCAGTTGTCTCTGATGCATCATAAAAATAATTGTCGTTCTGTTAATT
GAATACCACTCTGTAATTGCAAAAAGGAAGAAAAGAAAGTTGCAGCTGTTTTGTTGACATTCTGAATGCTTCTAAGTAA
ATACAATTTTTTTTATTAGTATTGTTGTCCTTTTAATAGGTGCCCTGGAAAATCATACTTTTTCTTTTCTCTCTCTCTC
TTTTTTTTTTTTTTTTTGAGGGGAACTCATCTTTTGCTTTATTGAATGCCCGTTTGGGATCACGTGAATATTACAGTTT
TCATCTTTCATATATCCAGCTGATAAACACAGCTTTGATCTACATACCCTGCATA
Commentsno specific expression detected stages 3-23.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-16
stage 16
Ubiquitous
 

Entry 3

GEISHA IdChEST26m2Data SourceGEISHA ISH Analysis
Forward cDNA Template Probeshow
AAGATTTGTTTTTAAACTGTACAGTGTCTCTTTTTTTGTATAGTTAACACACTACCGAATGTGTCTTTAGATAGCCCTG
TCCTTAGTGGTATTTCAATGGCCACTAACCTTGCCTGGTACAGTGTGGGGGTTGTAAATTGGCATGGGAGTTTTAAAGC
AGGTTCTTGTTGGTGCACAGCACAAATTAGTTCTATTTGGGGATGTAGTTCATTTCTCATCTTCAGTTGTCTCTGATGC
ATCATAAAAATAATTGTCGTTCTGTTAATTGAATACCACTCTGTAATTGCAAAAAGGAAGAAAAGAAAGTTGCAGCTGT
TTTGTTGACATTCTGAATGCTTCTAAGTAAATACAATTTTTTTTATTAGTATTGTTGTCCTTTTAATAGGTGCCCTGGA
AAATCATACTTTTTCTTTTCTCTCTCTCTCTTTTTTTTTTTTTTTTGAGGGGAACTCATCTTTTGCTTTATTGAATGCC
CGTTTGGGATCACGTGAATATTACAGTTTTCATCTTTCATATATCCAGCTGATAAACACAGCTTTGATCTACATACCCT
GCATATTCATGATAGGGTAAGAAGAGAAATCTATAGGCGTGTGATGAAAGAATATTCTTCCGTAACTGGAAACAAAAGA
AACCAATCTCATCAAAGCGATACTCGTTCAGAAGTTTGTGAAGTGTAATATTCTGTTGCATGAATTTACCAGTCTTGGA
GAGTTGAGAAGTATAGAGTTCAATATAACAGAAATGAAATACTTCTGGGGGGAGGGAGCGGATGTTGCGTTTTGTCCTG
GAAGGACCCATAGG
Commentswidespread expression
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
Area Opaca
Epiblast
 
7-12
stage 10
stage 11
stage 11
stage 12
Blood Islands
Blood Vessels
Extraembryonic
Forebrain
Hindbrain
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
Spinal Cord
Widespread Expression
not notochord
13-18
stage 18
Mesoderm
 
19-21
stage 21
  
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.4638

Mouse

Emage
EurexpressMGI:3648695
MGI GXDMGI:3648695

Frog

Xenbase1001205

Fruit Fly

BDGPFBgn0011764

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-030131-341, ZDB-GENE-030131-8480
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