GEISHA - A Chicken Embryo Gene Expression Database
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LMX1A
LIM homeobox transcription factor 1, alpha

Gene
Official SymbolLMX1A
Official Full NameLIM homeobox transcription factor 1, alpha
CGNC ID2494
also known asLIM homeobox transcription factor 1-alpha
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_001257388
PolypeptideNP_001244317
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.39597
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human
Mouse
Xenopus
Zebrafish
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene777133
Ensembl Gene
KEGGgga:777133

Entry 1

GEISHA Idpgf2n.pk001.n18Data SourceGEISHA ISH Analysis
Forward cDNA Template Probeshow
CCTTGAATTCCCGGGATGAGGTATCAGCTCCGGGAAATGTGTCTTGGCAGCAGTCGGACGGGCGCTTCCCCGCAGGTCG
CCGCGTTTCTCTCCGCAGCCGCCCGGGGCTCGGCGGCTCCCCCCGGTCCGCAGCCCCAACCCGCGGAAGAGCGCGGGGC
CGCCGGGGGCCGCGACTGAGCCCCCCAGGGGCGGTGGTTGAAGGCGAGGGGCTGCCTCCCCTCCGCTCCCGAAGCCTCC
CCGCCGGGGCCGCCCAAGGCGGGCGGTGCGGCCCCTCGCCCGGCCCGGCTCCTCACCATGCTGGACGGCTTGAACATGG
AAGAGACTTTGCAGAGCGCCCTGGACTCCGCCGCCCCCTTCTCCTCGCTGCTGGGCAGAGCCGCGACGCCCCGCTC
Commentsno expression detected for stages 4 and 9.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
1-3
stage 3
Unlabeled
 
7-12
stage 9
stage 10
stage 12
Forebrain
 
13-18
stage 13
stage 13
stage 15
stage 16
stage 16
stage 16
stage 16
stage 17
Ear/Otic Placcode
Head Mesenchyme
Neural Plate/Tube
Notochord
Retina
Spinal Cord
roof plate
roof plate of NE
19-22
stage 21
stage 21
stage 22
stage 22
Ear/Otic Placcode
Extraembryonic
Head Mesenchyme
Neural Plate/Tube
Pharyngeal Arches and Clefts
Retina
Surface Ectoderm
ecto of upper jaw, roof plate, floor of midbrain, diencephalon
looking into the midbrain

Entry 2

GEISHA IdS2LIM1a.UApcrData SourceGEISHA ISH Analysis
Reverse cDNA Template Probeshow
TACGANGGACTGAGGAGGGGAGGACACAAGCGGCCCAAGCGCCCGCGCACCATCCTGACCACGCAACAGCGCAGGGCCT
TCAAGGCGTCCTTCGAGGTCTCCTCCAAGCCCTGCAGGAAGGTGCGGGAGACACTGGCAGCCGAGACAGGGCTGAGCGT
GCGCGTGGTGCAGGTCTGGTTCCAGAACCAGAGAGCAAAGATGAAGAAGCTGGCCAGGAGGCAGCAGCAGCAGCAGCAG
GACCAGCAGAACACGCAGCGCTTGAGCTCAGCCCAGCCGAACAGCAGTGGCCCTGGGGGGCTGGAGGGGCTTATGAACC
CCTACACTGCTCTGCAACCCCCACAGCAGCTCCTGGGCATGGAGCAGGTCTACAGCTCCGACCCCTTCCGGCAAGGGCT
CACCCCCCCACAGATGCCTGGAGACCACATGCACCCCTATGGTGCTGAGCCCCTCTTCCATGACATGGACAGCGACGAT
ACCTCACTGAGCAACCTGGGTGACTGCTTCCTCGCCACAGCAGATGCGGGGCCACTGCAGACACGGGCGGGGAACCCCA
TCGACCACCTGTACTCCATGCAGAGCT
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
1-3
stage 3
Unlabeled
 
4-6
stage 4
stage 4
stage 5
stage 5
stage 6
stage 6
Head Process
Hensen's Node
Lateral Plate Mesoderm
Notochord
Primitive Streak
 
7-12
stage 9
stage 10
stage 11
stage 12
Central Nervous System
Ear/Otic Placcode
Neural Plate/Tube
Notochord
Oral Pharynx
Placcode
 
13-18
stage 14
stage 16
stage 17
Diencephalon
Ear/Otic Placcode
Hindbrain
Midbrain
Neural Plate/Tube
Notochord
Pituitary (Rudiment)
Rhombomeres
Telencephalon
roof plate
19-21
stage 19
stage 21
Diencephalon
Ear/Otic Placcode
Hindbrain
Midbrain
Rhombomeres
Telencephalon
roof plate

Entry 3

GEISHA IdS21aLIM.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template Probeshow
CANACGGCTCAGCTAGCAGCTACGCTCCTTCTCGTAGTCGCCCTTACAGAGCAGCTGCCCTTCCTTCAGCACGAACTCG
ATCGCCCTTCTGCAGGCGCCGCTCGCAGACGCAGCAGCAGAAGCAGTGCAGGTGGTAGACGCTCTGCTGGGCGCGCATC
ACCAGCTCGCTGGGCGCGATGCTCTCCAGGCACCCGGCGCACTTCACTGCGAACAACAAA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
1-3
stage 3
Unlabeled
 
4-6
stage 4
stage 5
stage 6
Head Process
Headfold
Hensen's Node
Notochord
 
7-12
stage 7
Hensen's Node
Neural Plate/Tube
 
13-18
stage 14
stage 15
stage 16
stage 17
Ear/Otic Placcode
Forebrain
Head Mesenchyme
Hindbrain
Midbrain
Pituitary (Rudiment)
 
19
stage 19
stage 19
Ear/Otic Placcode
Forebrain
Pituitary (Rudiment)
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.39597

Mouse

Emage
Eurexpress
MGI GXD

Frog

Xenbase

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFIN
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