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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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ELF2
E74 like ETS transcription factor 2

Gene

Official Symbol	ELF2
Official Full Name	E74 like ETS transcription factor 2
CGNC ID	7427
also known as	ETS-related transcription factor Elf-2\|E74-like factor 2 (ets domain transcription factor), E74-like factor 2, New ETS- related factor, NERF2, ETS-related transcription factor Elf-2
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	Gallus-Browse

Sequence Information

Genomic
RNA	XM_420406
Polypeptide	XP_420406
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	1998	ENSG00000109381
Mouse	69257	ENSMUSG00000037174	All phenotypic alleles (4):Targeted, other(2) Gene trapped(2)	MGI:1916507
Xenopus	448422, 432092			853310
Zebrafish	387534, 449916, 445489	ENSDARG00000079626, ENSDARG00000019459	ZDB-GENE-031215-1, ZDB-GENE-041008-176, ZDB-GENE-040822-41	ZFIN:ZDB-GENE-031215-1, ZFIN:ZDB-GENE-041008-176, ZFIN:ZDB-GENE-040822-41

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	422439
Ensembl Gene	ENSGALG00000009774
KEGG	gga:422439

Entry 1

GEISHA Id	pgp1n.pk014.c13	Data Source	GEISHA ISH Analysis
Forward cDNA Template Probe	show CGCCCGCCGCCCGCCCCGCGGCAGCGACCCGCCGGTCCCCGCCCCGCGCGCCCGGCGGGCAGCGCGAAGCCGCGGCGGG AGCGTCGACATGGCGACCTCCCTGCACGAGGGGCCCACCAACCAGCTCGACCTCCTCATCCGCGCCGTGGAAGCATCAG TTCATGGAAGCAATGTACACTGCACGGATAAGACAATTGAAGCTGCGGAGGCCTTGCTTCATATGGAGTCTCCTACCTG CCTGAGAAATGCCAGGAGTCCTGTGGAAGTTCTGGTCCCTCCTTGCGTGTCAACCCCAGAATTCATCCATGCAGCCATG AGGCCTGATGTGATCGCAGAAACTGTGGTAGAGGTGCCAGCAGATGAATCTGAACCAATGGATTTATCTCCTGTTCGAA CATCCCCTGATATCCATGAACGAATGAAGAAGAAAAAAGCTGGCCGTAAACCCAAGAGCCAACAGTCGACTATTTCAGA TGGGTCTCCAGACCTTGGTATAAAGAAGAAGCCTAGAGAAGGCAAAGGAAATACAACGTACTTATGGGAGTTTCTTCTG GACCTTCTCCAGGACAAAAATACTTGTCCTCGTTATATTAAGTGGACTCAGCGAGAGAAGGGAATCTTTAAGCTTGTGG ACTCGAAAGCTGTCTCCAAACTATGGGGAAAACACAAAAACAAACCTGACATGAACTATGAGACTATGGGAAGAGCTCT GAGATACTACTATCAAAGAGGAATCCTTGCCAAAGTTGAGGGGCAGAGGCTTGTTTATCAGTTTAAGGAGATGCCAAAA AATATAGTCGTCATCGATGATGACAAAAGCGAACCCTGCAGT
Comments	widespread expression in stages 11, 12, 14, 15, 18, 19, 23.

Stage

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Location (click to highlight)

Comments (click to highlight)

7-12

stage 10

Widespread Expression

13-18

stage 18

Mesoderm
Widespread Expression

19-23

stage 19

stage 23

Allantois
Face Mesenchyme
Hindbrain
Leg Mesenchyme
Mesoderm
Midbrain
Pharyngeal Arches and Clefts
Wing Mesenchyme

in storage too long, don't believe this

Entry 2

GEISHA Id	ELF2.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	AAGTTGAGGGGCAGAGGCTTG
Reverse cDNA Template Primer	AATTAACCCTCACTAAAGGTCTCGTTCCTTCTCCATAGGTTCAG	cDNA Template Length	1214
Forward cDNA Template Probe	show `CAACCTGTTCTTCACTTCACACACGTAATGATTCCTTCGGTTTTCATTGCCCCAGGAAGCGCGATAGCTGAGGGCGTAC TGACTACTACCACGGGGGTTACGGTCTGGCTCCCATCTGCCGGCTTCTCCTCCTGTAAAAGCGGCGGGGTTTTCCTTTC ACGTTCTTGGGTGACAGCCGCGGCGTCGGATTTAAGTTCGGGGCTTTTAATTACCGCACTAATAACCCGGGGGGCAGCC GGGCCGGACCCCTGCTGCGCAGGCACCGATAATCTAATCTCCGGGGTCCCATGAGCTATAGAAACCGGGGTTAGGGCTC AAAAACCCAAGGGGGTTCCGACGAGGTTGATACCTCCCGACCCAATCCGGGTTGGTTTGTTATGAACCGGGCCCGGGGG TCAATGGCGGGGGGGAAACGGAAGGATTTTGGCGGGGTGCCCTCCCGATTTGGTCTCCCGTTCTGGGGGCCCGGGGGGG`

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

stage 6

Area Pellucida
Extraembryonic Mesoderm
Lateral Plate Mesoderm
Neural Plate/Tube
Paraxial Mesoderm
Primitive Streak

7-12

stage 7

stage 8

stage 9

stage 11

stage 12

Anterior Intestinal Portal
Blood Islands
Blood Vessels
Extraembryonic Mesoderm
Head Mesenchyme
Headfold
Heart
Intermediate Mesoderm
Lateral Plate Mesoderm
Neural Plate/Tube
Paraxial Mesoderm
Primitive Streak
Somites
Widespread Expression

13-18

stage 13

stage 17

stage 18

Blood Islands
Blood Vessels
Extraembryonic Mesoderm
Head Mesenchyme
Heart
Intermediate Mesoderm
Lateral Plate Mesoderm
Limb Buds
Neural Plate/Tube
Paraxial Mesoderm
Pharyngeal Arches and Clefts
Somatic Mesoderm
Somites
Tail
Widespread Expression

19-24

stage 23

Widespread Expression

stage 25

Widespread Expression

Entry 3

GEISHA Id	NERF2.Gaspar.2002	Data Source	Publication
Complete cDNA Template Probe	show ATGACATCAGCAGTGATTGACACTGGAGGCCCTGGCCTGGAGTTCGACAGCAATGGAATGAAAAATCACGAGGAAAATG AGCCAGTCTCTGAATTCCCAGCTGTGATTGTGGAGCCAGTTCCTAGTGCCAGACTAGAACAGGGTTATGCTGCTCAGGT CCTGGTTTATGATGACGAGACTTATCTGATGCAAGATGTAGCAGAGGAACAAGAAATTGAGACTGAAACTGTGGAAACA GTGGAAGCATCAGTTCATGGAAGCAATGTACACTGCACGGATAAGACAATTGAAGCTGCGGAGGCCTTGCTTCATATGG AGTCTCCTACCTGCCTGAGAAATGCCAGGAGTCCTGAATTCATCCATGCAGCCATGAGGCCTGATGTGATCGCAGAAAC TGTGGTAGAGGTGCCAGCAGATGAATCTGAACCAATGGATTTATCTCCTGTTCGAACATCCCCTGATATCCATGAACGA ATGAAGAAGAAAAAAGCTGGCCGTAAACCCAAGAGCCAACAGTCGACTATTTCAGATGGGTCTCCAGACCTTGGTATAA AGAAGAAGCCTAGAGAAGGCAAAGGAAATACAACGTACTTATGGGAGTTTCTTCTGGACCTTCTCCAGGACAAAAATAC TTGTCCTCGTTATATTAAGTGGACTCAGCGAGAGAAGGGAATCTTTAAGCTTGTGGACTCGAAAGCTGTCTCCAAACTA TGGGGAAAACACAAAAACAAACCTGACATGAACTATGAGACTATGGGAAGAGCTCTGAGATACTACTATCAAAGAGGAA TCCTTGCCAAAGTTGAGGGGCAGAGGCTTGTTTATCAGTTTAAGGAGATGCCAAAAAATATAGTCGTCATCGATGATGA CAAAAGCGAACCCTGCAGTGAAGATTTGACAATGCCTACAGATGAAAAGTCATTGGAGAGAGTGTCTTTATCTGCAGAA AACCTCTTGAAGGCAGCAACCTCTGCACGTGGAGGAAAAAACTTGTCTCAGTTAAGCTGTACCAGAACAGAAAAAGCAG TCACCAGAGTGGTGAATATTGCCTCACCAGCACACGATACATCATCATCTCGCCCCTCAACAACCACTACTACTGTCCC AGCATCGTCAGCTCCCAGGACTGTACGCGTGGCAATGCAAGTGCCTGTTGTAATGACCTCTCTGGGACAGAAAATTTCT ACTGTGGCAGTACAGTCAGTAAATGCAGGGTCGCCGTTAATTACCAACACGAGTCCAACAACGGCGACAACTCCAAAGG TAGTAATCCAGACAATCCCTACCGTGATGCCAACCGCTACCGAGAATGGAGACAAAATCACGATGCAGCCTGCCAAAAT CATTACGATCCCGGCCACGCAGTTGACGCAGTGCCAGGTACAAACAAAACCAGGCCTGACTGGGTCGGGAAGTATCAAC ATCGTTGGAACCCCGTTGGCTGTTAGAGCACTAACCCCGGTGTCTATAGCTCATGGGACACCGGTGATGAGACTATCGG TGCCTGCGCAGCAGGCGTCCGGCCAGACTGCCCCCAGGGTTATTAGTGCAGTAATAAAAAGCCCAGAAGTTAAATCAGA CGCAGCGGCTGTCACGCAAGAACGTGAAGTGAAAACGCTGCAGCTCTTACAGGAGGAGAAGATGGCAGATGGGAGCAAG ACTGTAACCCACGTGGTAGTAGTCAGTACGCCCTCAGCTATCGCGCTTCCTGTGACAATGAAAACAGAAGGAATCATTA CGTGTGAGAAGTGAAGAACAGGTTGCTTCCAGCGTGGACTTACGGACTGTTACTGTTTTGCTTAAACTGACATAAATTG GGGAGGGAAGTGGAGGCGATCACCGCGTCAAAAAGGCGACTTCGGAAGTGTTAAAAAAACACGCGTTATGTTGGAGACT TGGGGAGAAAAGGAAATATTTTCCCGTGTTTCGGTGGGAATGGAACCACGTTGCTATGCTGACAGAAATGGCCTCTTCC AGTCAGGAGACAGCTGAACCTATGGAGAAGGAACGAGAGAGAGACTGAAAAGGGACCAAACAGTTCACTACGCTGTCAC AGCACACTAAGACCTGGAACACTAACATTGAATTGTGTGAGAGGTTTGCCTTGGTTTTTGGTTTTCAGGGGAGAGGAAA GTCTCATTTCTAGAAATGGCAAAGTTGATGAATTTTATATGCATACCAGCAATCACTACTGTGTGCCCGCAGTACTCAA CTGGTGCTAAGTGAAAACCTCTGCTACTAGGTATTGTAGAATGTGAAATAAAGGAGATCGAAGAGCTTCTAAAAGAAGA CGGAGACCTAGAGGGATTTTTGTATCATAGCTTAAGCAGATTCAAAATGGAAGCCTTAGACTGATTTTC
Citation	Gaspar J, Thai S, Voland C, Dube A, Libermann TA, Iruela-Arispe ML, Oettgen P. Opposing Functions of the Ets Factors NERF and ELF-1 During Chicken Blood Vessel Development. Arteriosclerosis, Thrombosis, and Vascular Biology. 2002 22:1106.
Copyright	PERMISSION REQUESTED
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # XM_420406.2).