GEISHA - A Chicken Embryo Gene Expression Database
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ZIC1
Zic family member 1

Gene
Official SymbolZIC1
Official Full NameZic family member 1
CGNC ID49043
also known aszinc finger protein ZIC 1|Zic family member 1 (odd-paired homolog, Drosophila)|zinc finger protein Zic1|zinc finger protein of the cerebellum 1, Zic1
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_204254
PolypeptideNP_989585
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.153
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human7545ENSG00000152977MIM:600470
Mouse22771ENSMUSG00000032368All phenotypic alleles (3):Targeted, knock-out(2) Targeted, other(1) MGI:106683
Xenopus100038076, 399124481981
Zebrafish30096ENSDARG00000015567ZDB-GENE-000208-4ZFIN:ZDB-GENE-000208-4
Gene Ontology
Molecular FunctionDNA binding, metal ion binding
Biological Processbehavior, cell differentiation, inner ear morphogenesis, pattern specification process, more...regulation of smoothened signaling pathway, regulation of transcription, DNA-templated, spinal cord development, transcription, DNA-templated
Cellular Componentcytoplasm, nucleus
Links to other databases
Entrez Gene374103
Ensembl Gene
KEGGgga:374103

Entry 1

GEISHA IdZic1.Rhodes.2006Data SourcePublication
Complete cDNA Template Probeshow
CCTCCCCCCTTTTTTTTTTTCTCCCCCCCGCGCTGATGCCGAAGGGGGTGTTTTTGATGTGGTTGCTTTGGTGGTGATC
GTCGCCGACTTTCCAGAGAGGGTGTTTTCGCCGCTGCCGCCGCTGCTGCTGCTTCTCTCCGCGTTGTGTGCGTGCGCGC
GTGCTTTTTTTTTGGGTTGCTGCATCGACACTGGGAAGATGCTTCTGGATGCTGGACCGCAGTATCCCGCCATAGGAGT
CACTACGTTCGGATCGTCTCGCCACCACTCCGCGGCCGATGTCACGGACAGAGAAGTGGGGCTGGGGATCAACCCCTTC
GCCGACGGCATGGGCGCCTTCAAACTCAACCCCGGCGGCCACGAGCTGGCCTCGGCCGGGCAGACCGCCTTCACCTCGC
AGGCTCCGGGCTACGCAGCAGCGCTGGGGCACCACCACCACCCGCCCCACGTCGGCTCCTACTCCAGCGCCGCGTTCAA
CTCCACCAGGGACTTTCTGTTCCGCAACCGCGGCTTCGGGGAGGCCGCGGCCGCCAGCGCCCAGCACAGCCTCTTCGCC
TCCGCCGCCGGCGGCTTCGGCGGCCCGCACGGACACGGCGATGCCGCGGGACATATACTTTTCCCCGGGCTGCACGAGC
AAGCCGCCGGCCACGCTTCGCCCAACGTGGTGAACGGGCAGATGCGCCTGGGCTTCTCCGGAGACATGTACGGCCGAGC
CGAGCAGTACGGCCAGGTCACCAGCCCCCGCTCCGAGCACTACGCCTCGAGCCAGCTGCACGGCTACGGCCACATGAAC
ATGAACATGGCAGCGCACCACGGGGCGGGGGCCTTCTTCCGCTACATGCGGCAGCCCATCAAGCAGGAACTCATCTGTA
AGTGGATTGAGCCCGAGCAGTTGGCGAACCCCAAAAAGTCCTGCAACAAAACTTTCAGCACGATGCACGAGCTGGTGAC
TCATGTCACCGTGGAGCACGTTGGAGGACCCGAGCAGTCCAATCACATATGTTTCTGGGAAGAGTGCCCGCGAGAAGGG
AAACCTTTCAAGGCCAAATACAAACTCGTAAATCACATCCGAGTCCACACAGGTGAAAAACCTTTCCCCTGCCCTTTCC
CAGGCTGTGGCAAAGTGTTTGCCAGATCAGAGAATCTCAAAATACACAAAAGAACTCACACAGGTGAAAAACCATTTAA
GTGTGAATTCGAGGGCTGTGACAGGCGCTTTGCAAACAGCAGCGACCGCAAAAAGCACATGCATGTGCACACTTCCGAC
AAGCCCTATCTCTGCAAAATGTGTGACAAGTCCTACACGCACCCCAGCTCCCTCAGAAAGCACATGAAGGTCCATGAAT
CGTCCTCGCAGGGGTCCCAGCCTTCTCCCGCCGCCAGCTCAGGCTACGAGTCCTCCACCCCTCCAACCATCGTGTCTCC
ATCCACAGAAAACCAGACCGCCAGCTCCTTATCCCCTTCCTCCTCCGCAGGCCACCACACGGCCAGCCACAGCACGCTT
ACATCAAATTTTAACGAATGGTACGTGTAAAGCGCTAAAACAAAACAGCGAAAAAAACACAAACCGAAACAAAACAAAA
AAGCCCCAAGCGAGCGAATCCAGACCCTATTTAAAAGACTCCAAAAATAATGAACACCCTGAAAACAGAAATAAAAAAA
AAAAAAGCAAACAAAAACAAAATGCTGCCAGTAGACCCAGGACTGAGTAAAATGAAGACTCATTTTTTTGTTTGTTTTT
TTTTTCCTTTTTTTTTTCTCTTTTATTCCTAACATTTTTTTTCCTTTTTATCCTTCCTTTTTTTAATTAATTAATATTA
CTTTTTTTTTTCCTTTTTACTTTTTGGACTGTTCAGCTCTGCTCTGTTCCAAGGCTTGGTAGGCGAAGGGGTTAGTAGG
ATGCATAAGAAGACAAGGTTACCAGGGCAAATGCCAACCGTGTAGGGCTGTACTGGAAACCACTGATTAGAGCTCTCCA
ACTGCATGTCTGCTCGGGCAACGGCCTTCCCCCCACTCCCTCTTGTAAATACAGAATTATTAGCTTCAAAAAAAA
CitationRhodes LSS, Merzdorf CS. The zic1 gene is expressed in chick somites but not in migratory neural crest. Gene Expr Patterns. 2006 Jun;6(5):539-45. Epub 2006 Jan 31.
CopyrightReprinted with permission from Elsevier. Copyright © 2005 Elsevier B.V. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204254).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 15
stage 18
stage 18
stage 18
Dermatome
Myotome
Neural Plate/Tube
Sclerotome
Spinal Cord
Dermomyotome
Dorsomedial Lip
Roof plate
19-21
stage 21
stage 21
Dermatome
Face Mesenchyme
Myotome
Sclerotome
Somites
Dermomyotome

Entry 2

GEISHA IdZic1.Khudyakov.2009Data SourcePublication
Complete cDNA Template Probeshow
GTACGGCCAGGTCACCAGCCCCCGCTCCGAGCACTACGCCTCGAGCCAGCTGCACGGCTACGGCCACATGAACATGAAC
ATGGCAGCGCACCACGGGGCGGGGGCCTTCTTCCGCTACATGCGGCAGCCCATCAAGCAGGAACTCATCTGTAAGTGGA
TTGAGCCCGAGCAGTTGGCGAACCCCAAAAAGTCCTGCAACAAAACTTTCAGCACGATGCACGAGCTGGTGACTCATGT
CACCGTGGAGCACGTTGGAGGACCCGAGCAGTCCAATCACATATGTTTCTGGGAAGAGTGCCCGCGAGAAGGGAAACCT
TTCAAGGCCAAATACAAACTCGTAAATCACATCCGAGTCCACACAGGTGAAAAACCTTTCCCCTGCCCTTTCCCAGGCT
GTGGCAAAGTGTTTGCCAGATCAGAGAATCTCAAGAATACACAAAATGAACTCACACAGGTGAAAAACCATTTAAGTGT
GAATTCGAGGGCTGTGACAGGCGCTTTGCAAACAGCAGCGACCGCAAAAAGCACATGCATGTGCACACTTCCGACAAGC
CCTATCTCTGCAAAATGTGTGACAAGTCCTACACGCACCCCAGCTCCCTCAGAAAGCACATGAAGGTCCATGAATCGTC
CTCGCAGGGGTCCCAGCCTTCTCCCGCCGCCAGCTCAGGCTACGAGTCCTCCACCCCTCCAACCATCGTGTCTCCATCC
ACAGAAAAACCAGACCGCCAGCTCCTTTATCCCCTTCCTCCTCCGCAGTCCACCACACGTCCAGCCACAGCACGCTTAC
ATC
CitationKhudyakov J, Bronner-Fraser M. Comprehensive spatiotemporal analysis of early chick neural crest network genes. Dev Dyn. 2009 Mar;238(3):716-23.
CopyrightPublished Online: 22 Feb 2009 Copyright © 2009 Wiley-Liss, Inc.
CommentsThe sequence below was obtained from NCBI (BU340803) using the information provided in the publication.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 5
stage 6
Epiblast
Neural Plate/Tube
 
7-10
stage 7
stage 7
stage 8
stage 9
stage 10
stage 10
Forebrain
Hindbrain
Nasal Placcode/Nerve
Neural Crest
Neural Plate/Tube
Somites
 

Entry 3

GEISHA IdZIC1.McMahon.2010Data SourcePublication
Complete cDNA Template Probeshow
GCGCTAAAACAAAACAGCGAAAAAAACACAAACCGAAACAAAACAAAAAAGCCCCAAGCGAGCGAATCCAGACCCTATT
TAAAAGACTCCAAAAATAATGAACACCCTGAAAACAGAAATAAAAAAAAAAAAAGCAAACAAAAACAAAATGCTGCCAG
TAGACCCAGGACTGAGTAAAATGAAGACTCATTTTTTTGTTTGTTTTTTTTTTCCTTTTTTTTTTCTCTTTTATTCCTA
ACATTTTTTTTCCTTTTTATCCTTCCTTTTTTTAATTAATTAATATTACTTTTTTTTTTCCTTTTTACTTTTTGGACTG
TTCAGCTCTGCTCTGTTCCAAGGCTTGGTAGGCGAAGGGGTTAGTAGGATGCATAAGAAGACAAGGTTACCAGGGCAAA
TGCCAACCGTGTAGGGCTGTACTGGAAACCACTGATTAGAGCTCTCCAACTGCATGTCTGCTCGGGCAACGGCCTTCCC
CCCACTCCCTCTTGTAAATACAG
CitationMcMahon AR, Merzdorf CS. Expression of the zic1, zic2, zic3, and zic4 genes in early chick embryos. BMC Res Notes. 2010; 3: 167.
CopyrightCopyright ©2010 McMahon et al; licensee BioMed Central Ltd.
CommentsThe probe was amplified by PCR using the following primers: 5'-GCGCTAAAACAAAACAGCGA-3' and 5'-CTGTATTTACAAGAGGGAGTGGG-3' and was extracted from NCBI Acc# NM_204254.1.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 7
stage 8
stage 9
stage 10
stage 11
stage 11
Forebrain
Headfold
Hindbrain
Mesencephalon
Rhombomeres
Somites
 
13-18
stage 15
stage 15
stage 15
stage 15
stage 15
stage 15
stage 15
stage 15
stage 15
stage 15
stage 15
stage 18
stage 18
stage 18
stage 18
stage 18
stage 18
Brainstem Nuclei
Dermatome
Diencephalon
Forebrain
Hindbrain
Mesencephalon
Metencephalon
Midbrain
Myelencephalon
Neural Plate/Tube
Rhombomeres
Sclerotome
Somites
Surface Ectoderm
optic stalk

Entry 4

GEISHA IdZIC4.McMahon.2010Data SourcePublication
Complete cDNA Template Probeshow
TGTCGCCTAGGTGGCCGGGGATGTCGAGCAGAGGGCGAGGGGCGCCGACAATGGAACCGAGTCAGGAAATGAGGCACAA
GACTCCCCTTGTAATGAGGAAAAGAAAACGACTTTACAGAAACATCCTGGAAAAGTCAAGTAGCTGCCCCGGACACCGC
GGGCACCACCGCCCCTCGGAAGCCGGGAATCCCGCGCTGTTCGCTGGACTCCATGAGCAGCCGCCCCATGCAGCTCCAG
GTGGCCATCTAAACGGACAGATAAGGCTGGGGTTACCTGGAGAAATGTACGCCAAGGCTGAACATTTCACTCCAGTGCC
AGCCTCCAGGACAGAGCCTTTTGCTGCTTCTTCGCTTCATAGCTACGGTGGCATGAACCTGAACGTGAACCTGGCTCCG
CACCACGGCCCGGGGGCCTTCTTCCGCTACATGCGGCAGCCCATCAAACAGGAACTCATCTGTAAGTGGATTGAGTTGG
AGCAGACTCCCAAAAAATTATGCTCGAAAACTTTCAGCACGATGCACGAGCTGGTGACTCATGTCACCGTGGAGCACGT
TGGAGGACCCGAGCAGTCCAATCACATATGTTTCTGGGAAGAGTGCCCGCGAGAAGGGAAACCTTTCAAGGCCAAATAC
AAACTCGTAAATCACATCCGAGTCCACACAGGTGAAAAACCTTTCCCCTGCCCTTTCCCAGGCTGTGGCAAAGTGTTTG
CCAGATCAGAGAATCTCAAAATACACAAAAGAACTCACACAGGTCAAGGGAGTTTCAAATGTNAATTCGAGGGCTGCGA
CAGACGCTTCGCCAACAGCAGCGACAGGAAGAAGCACTCGCACGTCCACACCAGCGACAAGCCCTACAACTGCAAAGTG
AGAGGCTGCGACAAGTCCTACACCCACCCCAGCTCCCTGAGAAAACACATGAAAGTGCACTGCAAATCCCCTCCTCCCA
GCTCCGGCTACGAGTCCTCCACGCCCTCCTTGGTGTCCCCCTCCTCGGACTCCGGCCGGGACCCCCCCGCCTCGTGTTC
CCACGCCGAGCCCTCCGCGCCCGCGCCGCCCGCCGCCAACCTGAGCGAATGGTGCGGTCTCTGTCTGGGAGGGGGGGCT
GAGGGCAGAGCCGCCAATGACGTCACGCAGCGGGTGGGGGCCCGGTGCCCCCCAGCAGAACGGAGCCGGGGCCGCTGCT
GCACGGCTGTGCCCTGCGGAGCGCTCCCGGTGCCGGTGCTCGCACAGCACGGCTGGGGCATGCCCCGGAGCTTCAAATG
TCAAGATAAAAGCGAGAGGAAAACAGCCGGTCAGTGGCAAACCCGGCCCCTCCCGCTGCAGCCGAATGCTGTTCCCAAG
GCACCGGGTCCCCGCTTCAGCGGCACGAACCAGACAAGTTTTGGGGTCTGTGCGCCCCGCTCCTCGCCGTGCGTCAGGG
CGAGAGTGCACCGCTGGGTCGGGGGAAATGGGTGCGCAGCCCACGCCGGGCACCGCTCCCTTCTGCCACGCGGCCCCGA
ACTCACACCGCAGAACCGGAGCCGGCTGCGGGCAGAGGGCTGTGTCCATCCTGTCCCCAGCTCTGTTTAG
CitationMcMahon AR, Merzdorf CS. Expression of the zic1, zic2, zic3, and zic4 genes in early chick embryos. BMC Res Notes. 2010; 3: 167.
CopyrightCopyright ©2010 McMahon et al; licensee BioMed Central Ltd.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-14
stage 14
stage 14
stage 14
stage 14
stage 14
stage 14
stage 14
 Anterior Trunk, no expression in dermomyotome or sclerotome
No expression
No expression in Trunk
Posterior Trunk, no expression
no expression in hindbrain
no expression in presomitic mesoderm of trunk

Entry 5

GEISHA IdZIC1.Ferran.2007Data SourcePublication
Complete cDNA Template Probeshow
GCCACAGCACGCTTACATCAAATTTTAACGAATGGTACGTGTAAAGCGCTAAAACAAAACAGCGAAAAAAACACAAACC
GAAACAAAACAAAAAAGCCCCAAGCGAGCGAATCCAGACCCTATTTAAAAGACTCCAAAAATAATGAACACCCTGAAAA
CAGAAATAAAAAAAAAAAAAGCAAACAAAAACAAAATGCTGCCAGTAGACCCAGGACTGAGTAAAATGAAGACTCATTT
TTTTGTTTGTTTTTTTTTTCCTTTTTTTTTTCTCTTTTATTCCTAACATTTTTTTTCCTTTTTATCCTTCCTTTTTTTA
ATTAATTAATATTACTTTTTTTTTTCCTTTTTACTTTTTGGACTGTTCAGCTCTGCTCTGTTCCAAGGCTTGGTAGGCG
AAGGGGTTAGTAGGATGCATAAGAAGACAAGGTTACCAGGGCAAATGCCAACCGTGTAGGGCTGTACTGGAAACCACTG
ATTAGAGCTCTCCAACTGCATGTCTGC
CitationFerran JL, Sánchez-Arrones L, Sandoval JE, Puelles L. A model of early molecular regionalization in the chicken embryonic pretectum. J Comp Neurol. 2007 Dec 1;505(4):379-403.
CopyrightCopyright © 1999–2012 John Wiley & Sons, Inc. All Rights Reserved.
CommentsThe sequence below was obtained from NCBI (acc #: NM_204254.1 - Showing 504 bp region from base 1,488 to 1,988) using the information provided in the publication.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 17
stage 17
stage 17
stage 17
Diencephalon
Forebrain
Midbrain
 
25
stage 25
stage 25
stage 25
stage 25
Diencephalon
Mesencephalon
 

Entry 6

GEISHA IdZIC1.Warner.2003Data SourcePublication
Complete cDNA Template Probeshow
ATTAAAACTTTCAGCACCATGCACGAGCTGGTGACTCATGTCACCGTGGAGCACGTTGGAGGACCCGAGCAGTCCAATC
ACATATGTTTCTGGGAAGAGTGCCCGCGAGAAGGGAAACCTTTCAAGGCCAAATACAAACTCGTAAATCACATCCGAGT
CCACACAGGTGAAAAACCTTTCCCCTGCCCTTTCCCAGGCTGTGGCAAAGTGTTTGCCAGATCAGAGAATCTCAAAATA
CACAAAAGAACTCACACAGGTGAAAAACCATTTAAGTGTGAATTCGAGGGCTGTGACAGGCGCTTTGCAAACAGCAGCG
ACCGCAAAAAGCACATGCATGTGCACACTTCCGACAAGCCCTATCTCTGCAAAATGTGTGACAAGTCCTACACGCACCC
CAGCTCCCTCAGAAAGCACATGAAGGTCCATGAA
CitationWarner SJ, Hutson MR, Oh SH, Gerlach-Bank LM, Lomax MI, Barald KF. Expression of ZIC genes in the development of the chick inner ear and nervous system. Dev Dyn. 2003 Apr;226(4):702-12.
CopyrightCopyright © 2003 Wiley‐Liss, Inc.
CommentsThe complete cDNA template sequence was obtained from the information in the publication as described in Warner et al. 2003.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 12
stage 12
stage 12
Ear/Otic Placode
Hindbrain
Unlabeled
 
13-18
stage 14
stage 18
stage 18
Ear/Otic Placode
Hindbrain
Neural Plate/Tube
 
19-24
stage 21
stage 23
stage 23
stage 23
stage 23
stage 23
stage 23
stage 23
stage 23
stage 23
stage 23
stage 24
Ear/Otic Placode
Hindbrain
Midbrain
Neural Crest
Neural Plate/Tube
Somites
Double in situ hybridization: ZIC1
labeling is red, Chordin is deep purple.
periotic mesenchyme
roofplate
25-30
stage 26
stage 30
stage 30
stage 30
Ear/Otic Placode
Hindbrain
Neural Plate/Tube
 
31-44
stage 32
stage 32
stage 32
stage 32
stage 32
stage 32
stage 35
stage 35
stage 35
stage 38
stage 38
stage 38
stage 42
stage 42
stage 42
stage 44
stage 44
stage 44
stage 44
stage 44
stage 44
Ear/Otic Placode
Hindbrain
Neural Plate/Tube
Unlabeled
endolymphatic duct and sac
sacculus

Entry 7

GEISHA IdZic1.Odaka.2018Data SourcePublication
Complete cDNA Template Probeshow
CCTCCCCCCTTTTTTTTTTTCTCCCCCCCGCGCTGATGCCGAAGGGGGTGTTTTTGATGTGGTTGCTTTGGTGGTGATC
GTCGCCGACTTTCCAGAGAGGGTGTTTTCGCCGCTGCCGCCGCTGCTGCTGCTTCTCTCCGCGTTGTGTGCGTGCGCGC
GTGCTTTTTTTTTGGGTTGCTGCATCGACACTGGGAAGATGCTTCTGGATGCTGGACCGCAGTATCCCGCCATAGGAGT
CACTACGTTCGGATCGTCTCGCCACCACTCCGCGGCCGATGTCACGGACAGAGAAGTGGGGCTGGGGATCAACCCCTTC
GCCGACGGCATGGGCGCCTTCAAACTCAACCCCGGCGGCCACGAGCTGGCCTCGGCCGGGCAGACCGCCTTCACCTCGC
AGGCTCCGGGCTACGCAGCAGCGCTGGGGCACCACCACCACCCGCCCCACGTCGGCTCCTACTCCAGCGCCGCGTTCAA
CTCCACCAGGGACTTTCTGTTCCGCAACCGCGGCTTCGGGGAGGCCGCGGCCGCCAGCGCCCAGCACAGCCTCTTCGCC
TCCGCCGCCGGCGGCTTCGGCGGCCCGCACGGACACGGCGATGCCGCGGGACATATACTTTTCCCCGGGCTGCACGAGC
AAGCCGCCGGCCACGCTTCGCCCAACGTGGTGAACGGGCAGATGCGCCTGGGCTTCTCCGGAGACATGTACGGCCGAGC
CGAGCAGTACGGCCAGGTCACCAGCCCCCGCTCCGAGCACTACGCCTCGAGCCAGCTGCACGGCTACGGCCACATGAAC
ATGAACATGGCAGCGCACCACGGGGCGGGGGCCTTCTTCCGCTACATGCGGCAGCCCATCAAGCAGGAACTCATCTGTA
AGTGGATTGAGCCCGAGCAGTTGGCGAACCCCAAAAAGTCCTGCAACAAAACTTTCAGCACGATGCACGAGCTGGTGAC
TCATGTCACCGTGGAGCACGTTGGAGGACCCGAGCAGTCCAATCACATATGTTTCTGGGAAGAGTGCCCGCGAGAAGGG
AAACCTTTCAAGGCCAAATACAAACTCGTAAATCACATCCGAGTCCACACAGGTGAAAAACCTTTCCCCTGCCCTTTCC
CAGGCTGTGGCAAAGTGTTTGCCAGATCAGAGAATCTCAAAATACACAAAAGAACTCACACAGGTGAAAAACCATTTAA
GTGTGAATTCGAGGGCTGTGACAGGCGCTTTGCAAACAGCAGCGACCGCAAAAAGCACATGCATGTGCACACTTCCGAC
AAGCCCTATCTCTGCAAAATGTGTGACAAGTCCTACACGCACCCCAGCTCCCTCAGAAAGCACATGAAGGTCCATGAAT
CGTCCTCGCAGGGGTCCCAGCCTTCTCCCGCCGCCAGCTCAGGCTACGAGTCCTCCACCCCTCCAACCATCGTGTCTCC
ATCCACAGAAAACCAGACCGCCAGCTCCTTATCCCCTTCCTCCTCCGCAGGCCACCACACGGCCAGCCACAGCACGCTT
ACATCAAATTTTAACGAATGGTACGTGTAAAGCGCTAAAACAAAACAGCGAAAAAAACACAAACCGAAACAAAACAAAA
AAGCCCCAAGCGAGCGAATCCAGACCCTATTTAAAAGACTCCAAAAATAATGAACACCCTGAAAACAGAAATAAAAAAA
AAAAAAGCAAACAAAAACAAAATGCTGCCAGTAGACCCAGGACTGAGTAAAATGAAGACTCATTTTTTTGTTTGTTTTT
TTTTTCCTTTTTTTTTTCTCTTTTATTCCTAACATTTTTTTTCCTTTTTATCCTTCCTTTTTTTAATTAATTAATATTA
CTTTTTTTTTTCCTTTTTACTTTTTGGACTGTTCAGCTCTGCTCTGTTCCAAGGCTTGGTAGGCGAAGGGGTTAGTAGG
ATGCATAAGAAGACAAGGTTACCAGGGCAAATGCCAACCGTGTAGGGCTGTACTGGAAACCACTGATTAGAGCTCTCCA
ACTGCATGTCTGCTCGGGCAACGGCCTTCCCCCCACTCCCTCTTGTAAATACAGAATTATTAGCTTCAAAAAAAA
CitationYuri S Odaka, Takahide Tohmonda, Atsushi Toyoda, Jun Aruga. An Evolutionarily Conserved Mesodermal Enhancer in Vertebrate Zic3. Sci Rep. 2018 Oct 8;8(1):14954. DOI: 10.1038/s41598-018-33235-y.
CopyrightCopyright © The Author(s) 2018.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence was obtained from NCBI (NM_204254.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 6
Neural Plate/Tube
Primitive Streak
 
7-11
stage 7
stage 7
stage 7
stage 7
stage 8
stage 9
stage 11
stage 11
stage 11
stage 11
Diencephalon
Hindbrain
Neural Crest
Neural Plate/Tube
Notochord
Somites
Spinal Cord
Telencephalon
 
all
 
  

Entry 8

GEISHA IdZIC1.Lida.2020Data SourcePublication
Complete cDNA Template Probeshow
AGGCCACCACACGGCCAGCCACAGCACGCTTACATCAAATTTTAACGAATGGTACGTGTAAAGCGCTAAAACAAAACAG
CGAAAAAAACACAAACCGAAACAAAACAAAAAAGCCCCAAGCGAGCGAATCCAGACCCTATTTAAAAGACTCCAAAAAT
AATGAACACCCTGAAAACAGAAATAAAAAAAAAAAAAGCAAACAAAAACAAAATGCTGCCAGTAGACCCAGGACTGAGT
AAAATGAAGACTCATTTTTTTGTTTGTTTTTTTTTTCCTTTTTTTTTTCTCTTTTATTCCTAACATTTTTTTTCCTTTT
TATCCTTCCTTTTTTTAATTAATTAATATTACTTTTTTTTTTCCTTTTTACTTTTTGGACTGTTCAGCTCTGCTCTGTT
CCAAGGCTTGGTAGGCGAAGGGGTTAGTAGGATGCATAAGAAGACAAGGTTACCAGGGCAAATGCCAACCGTGTAGGGC
TGTACTGGAAACCACTGATTAGAGCTCTCCAACTGCATGTCTGCTCGGGCAACGGCCTTCCCCCCACTCCCTCTTGTAA
ATACAGA
CitationIida H, Furukawa Y, Teramoto M, Suzuki H, Takemoto T, Uchikawa M, Kondoh H. Sox2 gene regulation via the D1 enhancer in embryonic neural tube and neural crest by the combined action of SOX2 and ZIC2. Genes Cells . 2020 Apr;25(4):242-256. doi: 10.1111/gtc.12753. Epub 2020 Feb 26.
Copyright2020 Molecular Biology Society of Japan and John Wiley & Sons Australia, Ltd.
CommentsProbe template is nt 1,533-2029 of NM_204254.1
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
1-3
stage 1
stage 2
stage 3
  
4-6
stage 4
stage 5
stage 6
Neural Plate/Tube
Primitive Streak
 
7-8
stage 7
stage 8
Neural Plate/Tube
 
all
 
  
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.153

Mouse

EmageMGI:106683
EurexpressMGI:106683
MGI GXDMGI:106683

Frog

Xenbase481981

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-000208-4
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