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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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MESP1
mesoderm posterior bHLH transcription factor 1

Gene

Official Symbol	MESP1
Official Full Name	mesoderm posterior bHLH transcription factor 1
CGNC ID
also known as	CMESO-1, CMESO1, mesoderm posterior protein 1\|bHLH transcription factor\|mesoderm posterior 1 homolog
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_204566
Polypeptide	NP_989897
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.163

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	145873	ENSG00000188095		MIM:605195
Mouse	17293	ENSMUSG00000030543		MGI:1096325
Xenopus	734031, 397972, 373581			6467361, 920824
Zebrafish	100006128, 58069	ENSDARG00000068761	ZDB-GENE-090817-2, ZDB-GENE-000406-8	ZFIN:ZDB-GENE-090817-2, ZFIN:ZDB-GENE-000406-8

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	395252
Ensembl Gene	ENSGALG00000026467
KEGG	gga:395252

Entry 1

GEISHA Id	MESP2.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	GGCTCTGGATGCGGGGACAG
Reverse cDNA Template Primer	AATTAACCCTCACTAAAGGCACAAAGTCTGGCGGCAGCAG	cDNA Template Length	256
Forward cDNA Template Probe	show ATGGCCCACCCGGCAGCTCCCGGCTTCGCGCTCCGCACCGCCTCTCCGCTGCACGGCTGGGGTCTCCCCACGGTCCCCG AGCCCGAGGGCTACAGCAGCAGCTCGCCGGCACCTTCACCCGACTCCTGCGGCCTCTCGCCCCCTGCCAGGGCACCGCG CCGTGCTCCCGCGGGCAGGAGGGGATCAGGGGTGGCCGGGGGCCCACGGCAGAGCGCCAGCGAGAGGGAGAAGCTGCGG ATGCGGCGGCTGGCGCAGGCCATGCACCGGCTGCGGCACTACCTGCCGCCCGCGCTGGCGCCCGCCGGGCAGAGCCTCA CCAAGATCGAGACCCTGCGCCTCGCCACCCGCTACATCGCCCACCTCTCGGCGCTGCTGGGCCTCAGCGAGGAGGTGCT GCTACTGCGCCGGGGGGCGGCCCCCCGCCACTGCCCGCTCTGCCCCCAGGGCCTGGGCTGCTGCCAGCCCCCGCGCCCC CGGCTGCGCCCCCTGGCCCCGCAGGATGCTTCGCCTCCCGGCTTGGTGGGTTGGGGGACCCCCCTGGAGCTGCGCGGGG CTCTGGATGCGGGGACAGGGACGTGGGGGTCACTCTCCAGTGGCCCCGTGTTGGAGACCCGCCCAGAGCTGCACGGGGT TCCTGCCACGGGGATGGAGCTCTGGTCATCACCCTCCTACAGCCCCACTGCGGGGGCATCCCCAGAGCTGCACGGGGCT CTCGCCTCCAACGTGTCCTCCTGGCCATCCCCTCCTCACTGCGCAGCGGCAGGGACCTCTCTGGACCCCCCCAGTGACC CCATCCTGGACACGGGGCTGCTGCCGCCAGACTTTGTGGATGCAGAGATGGTCACCCAGGACATCTCAGCAGATCTGCT CTCTCTGCTGGAGGCTCTGCTCCCAACACAGCCCCAGGACTGAGCCATGCACCATCAGATGCCCACGACTTGCAGGACC CAGGGAGATATGTGTCCCCCCTTGGACAGCTGGGAGGGTGGCGAAGACAAGGTGCTTGAAGCCTGGATCCATGCTGGCC GTGACTGTACATAATATACTGTGACTGTACATAAAATACTGTGACTGTACATAAATAAACCCTTTTGCCCAC

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

7-12

stage 10

stage 11

stage 12

Paraxial Mesoderm
Primitive Streak

13-18

stage 13

stage 15

Paraxial Mesoderm

19-24

stage 22

stage 24

Allantois
Forebrain
Gut
Hindbrain
Leg Mesenchyme
Mesonephros
Midbrain
Pharyngeal Arches and Clefts
Sclerotome
Somites
Spinal Cord
Tail
Wing Mesenchyme

Entry 2

GEISHA Id	MESP2	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show TCCCGCGGGCAGGAGGGGATCAGGGGTGGCCGGGGGCCCACGGCAGAGCGCCAGCGAGAGGGAGAAGCTGCGGATGCGG CGGCTGGCGCAGGCCATGCACCGGCTGCGGCACTACCTGCCGCCCACGCTGGCGCCCGCCGGGCAGAGCCTCACCAAGA TCGAGACCCTGCGCCTCGCCACCCGCTACATCGCCCACCTCTCGGCGCTGCTGGGCCTCAGCGAGGAGGTGCTGCTACT GCGCCGGGGGGCGGCCCCCCGCCACTGCCCGCTCTGCCCCCAGGGCCTGGGCTGCTGCCAGCCCCCGCGCCCCCGACTG CGCCCCCCGGCCCCGCAGGATGCTTCGCCTCCCGGCTTGGTGGGTTGGGGGACCCCCCTGGAGCTGCGCGGGGCTCTGG ATGCGGGGACGGGGATGTGGGGGTCACTCTCCAGTGGCCCCGTGTTGGAGACCCGCCCGGAGCTGCACGGGGTTCCTGC CACGGGGATGGAGCTCTGGTCATCACCCTCCTACAGCCCCACTGCGGGGGCATCCCCGGAGCTGCATGGAACGCCAGGC TCCA
Comments	NCBI shows two genes named MESP2. This is the true ortholog of MESP2 in other species.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

stage 5

stage 6

Early Mesoderm
Paraxial Mesoderm
Primitive Streak
Somites

7-9

stage 8

stage 9

Dermatome
Paraxial Mesoderm
Somites

Entry 3

GEISHA Id	MESP1	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show ATGGCCCACCCGGCAGCTCCCGGCTTCGCGCTCCGCACCGCCTCTCCGCTGCACGGCTGGGGTCTCCCCACGGTCCCCG AGCCCGAGGGCTACAGCAGCAGCTCGCCGGCACCTTCACCCGACTCCTGCGGCCTCTCGCCCCCTGCCAGGGCACCGCG CCGTGCTCCCGCGGGCAGGAGGGGATCAGGGGTGGCCGGGGGCCCACGGCAGAGCGCCAGCGAGAGGGAGAAGCTGCGG ATGCGGCGGCTGGCGCAGGCCATGCACCGGCTGCGGCACTACCTGCCGCCCGCGCTGGCGCCCGCCGGGCAGAGCCTCA CCAAGATCGAGACCCTGCGCCTCGCCACCCGCTACATCGCCCACCTCTCGGCGCTGCTGGGCCTCAGCGAGGAGGTGCT GCTACTGCGCCGGGGGGCGGCCCCCCGCCACTGCCCGCTCTGCCCCCAGGGCCTGGGCTGCTGCCAGCCCCCGCGCCCC CGGCTGCGCCCCCTGGCCCCGCAGGATGCTTCGCCTCCCGGCTTGGTGGGTTGGGGGACCCCCCTGGAGCTGCGCGGGG CTCTGGATGCGGGGACAGGGACGTGGGGGTCACTCTCCAGTGGCCCCGTGTTGGAGACCCGCCCAGAGCTGCACGGGGT TCCTGCCACGGGGATGGAGCTCTGGTCATCACCCTCCTACAGCCCCACTGCGGGGGCATCCCCAGAGCTGCACGGGGCT CTCGCCTCCAACGTGTCCTCCTGGCCATCCCCTCCTCACTGCGCAGCGGCAGGGACCTCTCTGGACCCCCCCAGTGACC CCATCCTGGACACGGGGCTGCTGCCGCCAGACTTTGTGGATGCAGAGATGGTCACCCAGGACATCTCAGCAGATCTGCT CTCTCTGCTGGAGGCTCTGCTCCCAACACAGCCCCAGGACTGAGCCATGCACCATCAGATGCCCACGACTTGCAGGACC CAGGGAGATATGTGTCCCCCCTTGGACAGCTGGGAGGGTGGCGAAGACAAGGTGCTTGAAGCCTGGATCCATGCTGGCC GTGACTGTACATAATATACTGTGACTGTACATAAAATACTGTGACTGTACATAAATAAACCCTTTTGCCCAC
Comments	NCBI shows two genes named MESP1. This is the true ortholog of MESP1 in other species.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

1-3

stage 3

Primitive Streak

4-6

stage 4

stage 5

Paraxial Mesoderm
Primitive Streak

7-9

stage 7

stage 8

stage 9

Paraxial Mesoderm
Primitive Streak
Somites

Entry 4

GEISHA Id	MESO1.Watanabe.2009	Data Source	Publication
Complete cDNA Template Probe	show ATGGCCCACCCGGCAGCTCCCGGCTTCGCGCTCCGCACCGCCTCTCCGCTGCACGGCTGGGGTCTCCCCACGGTCCCCG AGCCCGAGGGCTACAGCAGCAGCTCGCCGGCACCTTCACCCGACTCCTGCGGCCTCTCGCCCCCTGCCAGGGCACCGCG CCGTGCTCCCGCGGGCAGGAGGGGATCAGGGGTGGCCGGGGGCCCACGGCAGAGCGCCAGCGAGAGGGAGAAGCTGCGG ATGCGGCGGCTGGCGCAGGCCATGCACCGGCTGCGGCACTACCTGCCGCCCGCGCTGGCGCCCGCCGGGCAGAGCCTCA CCAAGATCGAGACCCTGCGCCTCGCCACCCGCTACATCGCCCACCTCTCGGCGCTGCTGGGCCTCAGCGAGGAGGTGCT GCTACTGCGCCGGGGGGCGGCCCCCCGCCACTGCCCGCTCTGCCCCCAGGGCCTGGGCTGCTGCCAGCCCCCGCGCCCC CGGCTGCGCCCCCTGGCCCCGCAGGATGCTTCGCCTCCCGGCTTGGTGGGTTGGGGGACCCCCCTGGAGCTGCGCGGGG CTCTGGATGCGGGGACAGGGACGTGGGGGTCACTCTCCAGTGGCCCCGTGTTGGAGACCCGCCCAGAGCTGCACGGGGT TCCTGCCACGGGGATGGAGCTCTGGTCATCACCCTCCTACAGCCCCACTGCGGGGGCATCCCCAGAGCTGCACGGGGCT CTCGCCTCCAACGTGTCCTCCTGGCCATCCCCTCCTCACTGCGCAGCGGCAGGGACCTCTCTGGACCCCCCCAGTGACC CCATCCTGGACACGGGGCTGCTGCCGCCAGACTTTGTGGATGCAGAGATGGTCACCCAGGACATCTCAGCAGATCTGCT CTCTCTGCTGGAGGCTCTGCTCCCAACACAGCCCCAGGACTGAGCCATGCACCATCAGATGCCCACGACTTGCAGGACC CAGGGAGATATGTGTCCCCCCTTGGACAGCTGGGAGGGTGGCGAAGACAAGGTGCTTGAAGCCTGGATCCATGCTGGCC GTGACTGTACATAATATACTGTGACTGTACATAAAATACTGTGACTGTACATAAATAAACCCTTTTGCCCAC
Citation	Watanabe T, Sato Y, Saito D, Tadokoro R, Takahashi Y. EphrinB2 coordinates the formation of a morphological boundary and cell epithelialization during somite segmentation. Proc Natl Acad Sci U S A. 2009 May 5; 106(18): 74677472.
Copyright	Copyright 2009 national Academy of Sciences USA
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_204566.1 ).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

7-12

stage 8

stage 12

Somites

Entry 5

GEISHA Id	cMeso1.Buchberger.2002	Data Source	Publication
Complete cDNA Template Probe	show ATGGCCCACCCGGCAGCTCCCGGCTTCGCGCTCCGCACCGCCTCTCCGCTGCACGGCTGGGGTCTCCCCACGGTCCCCG AGCCCGAGGGCTACAGCAGCAGCTCGCCGGCACCTTCACCCGACTCCTGCGGCCTCTCGCCCCCTGCCAGGGCACCGCG CCGTGCTCCCGCGGGCAGGAGGGGATCAGGGGTGGCCGGGGGCCCACGGCAGAGCGCCAGCGAGAGGGAGAAGCTGCGG ATGCGGCGGCTGGCGCAGGCCATGCACCGGCTGCGGCACTACCTGCCGCCCGCGCTGGCGCCCGCCGGGCAGAGCCTCA CCAAGATCGAGACCCTGCGCCTCGCCACCCGCTACATCGCCCACCTCTCGGCGCTGCTGGGCCTCAGCGAGGAGGTGCT GCTACTGCGCCGGGGGGCGGCCCCCCGCCACTGCCCGCTCTGCCCCCAGGGCCTGGGCTGCTGCCAGCCCCCGCGCCCC CGGCTGCGCCCCCTGGCCCCGCAGGATGCTTCGCCTCCCGGCTTGGTGGGTTGGGGGACCCCCCTGGAGCTGCGCGGGG CTCTGGATGCGGGGACAGGGACGTGGGGGTCACTCTCCAGTGGCCCCGTGTTGGAGACCCGCCCAGAGCTGCACGGGGT TCCTGCCACGGGGATGGAGCTCTGGTCATCACCCTCCTACAGCCCCACTGCGGGGGCATCCCCAGAGCTGCACGGGGCT CTCGCCTCCAACGTGTCCTCCTGGCCATCCCCTCCTCACTGCGCAGCGGCAGGGACCTCTCTGGACCCCCCCAGTGACC CCATCCTGGACACGGGGCTGCTGCCGCCAGACTTTGTGGATGCAGAGATGGTCACCCAGGACATCTCAGCAGATCTGCT CTCTCTGCTGGAGGCTCTGCTCCCAACACAGCCCCAGGACTGAGCCATGCACCATCAGATGCCCACGACTTGCAGGACC CAGGGAGATATGTGTCCCCCCTTGGACAGCTGGGAGGGTGGCGAAGACAAGGTGCTTGAAGCCTGGATCCATGCTGGCC GTGACTGTACATAATATACTGTGACTGTACATAAAATACTGTGACTGTACATAAATAAACCCTTTTGCCCAC
Citation	Buchberger A, Bonneick S, Klein C, Arnold HH. Dynamic expression of chicken cMeso2 in segmental plate and somites. Dev Dyn. 2002 Jan;223(1):108-18.
Copyright	Copyright © 2002 Wiley‐Liss, Inc.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204566.1). cMeso1 is also known as MESP1 in NCBI.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

7-12

stage 7

stage 9

stage 10

stage 11

Lateral Plate Mesoderm
Paraxial Mesoderm
Somites

Double in situ hybridizations indicate that cMeso1 transcripts (blue) accumulate in domains posterior to Cek8 transcripts (red).
Double-label in situ hybridization: cMeso2 (red) and cMeso1 (blue) probes
Double-label in situ hybridization: cMeso2 (red) and cMeso1 (blue) probes

31-44

stage 44

Entry 6

GEISHA Id	cMeso-1.Buchberger.1998	Data Source	Publication
Complete cDNA Template Probe	show ATGGCCCACCCGGCAGCTCCCGGCTTCGCGCTCCGCACCGCCTCTCCGCTGCACGGCTGGGGTCTCCCCACGGTCCCCG AGCCCGAGGGCTACAGCAGCAGCTCGCCGGCACCTTCACCCGACTCCTGCGGCCTCTCGCCCCCTGCCAGGGCACCGCG CCGTGCTCCCGCGGGCAGGAGGGGATCAGGGGTGGCCGGGGGCCCACGGCAGAGCGCCAGCGAGAGGGAGAAGCTGCGG ATGCGGCGGCTGGCGCAGGCCATGCACCGGCTGCGGCACTACCTGCCGCCCGCGCTGGCGCCCGCCGGGCAGAGCCTCA CCAAGATCGAGACCCTGCGCCTCGCCACCCGCTACATCGCCCACCTCTCGGCGCTGCTGGGCCTCAGCGAGGAGGTGCT GCTACTGCGCCGGGGGGCGGCCCCCCGCCACTGCCCGCTCTGCCCCCAGGGCCTGGGCTGCTGCCAGCCCCCGCGCCCC CGGCTGCGCCCCCTGGCCCCGCAGGATGCTTCGCCTCCCGGCTTGGTGGGTTGGGGGACCCCCCTGGAGCTGCGCGGGG CTCTGGATGCGGGGACAGGGACGTGGGGGTCACTCTCCAGTGGCCCCGTGTTGGAGACCCGCCCAGAGCTGCACGGGGT TCCTGCCACGGGGATGGAGCTCTGGTCATCACCCTCCTACAGCCCCACTGCGGGGGCATCCCCAGAGCTGCACGGGGCT CTCGCCTCCAACGTGTCCTCCTGGCCATCCCCTCCTCACTGCGCAGCGGCAGGGACCTCTCTGGACCCCCCCAGTGACC CCATCCTGGACACGGGGCTGCTGCCGCCAGACTTTGTGGATGCAGAGATGGTCACCCAGGACATCTCAGCAGATCTGCT CTCTCTGCTGGAGGCTCTGCTCCCAACACAGCCCCAGGACTGAGCCATGCACCATCAGATGCCCACGACTTGCAGGACC CAGGGAGATATGTGTCCCCCCTTGGACAGCTGGGAGGGTGGCGAAGACAAGGTGCTTGAAGCCTGGATCCATGCTGGCC GTGACTGTACATAATATACTGTGACTGTACATAAAATACTGTGACTGTACATAAATAAACCCTTTTGCCCAC
Citation	Buchberger A, Seidl K, Klein C, Eberhardt H, Arnold HH. cMeso-1, a novel bHLH transcription factor, is involved in somite formation in chicken embryos. Dev Biol. 1998 Jul 15;199(2):201-15.
Copyright	Copyright © 1998 Academic Press. All rights reserved.
Comments	The complete cDNA template sequence was obtained from the information from the publication as described in Buchberger et al. 1998. cMeso-1 is also known as MESP1 in NCBI.