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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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NKX6-3
NK6 homeobox 3

Gene

Official Symbol	NKX6-3
Official Full Name	NK6 homeobox 3
CGNC ID	13582
also known as	homeobox protein Nkx-6.3\|NK6 transcription factor related, locus 3, NK6 homeobox 3 , NK6.3
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	Gallus-Browse

Sequence Information

Genomic
RNA	XM_428808
Polypeptide	XP_428808
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human
Mouse	74561	ENSMUSG00000063672	All phenotypic alleles (4):Targeted, knock-out(2) Targeted, other(2)	MGI:1921811
Xenopus	100489301, 100101319			478608
Zebrafish	558978	ENSDARG00000060529	ZDB-GENE-070810-7	ZFIN:ZDB-GENE-070810-7

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	431254
Ensembl Gene	ENSGALG00000018503
KEGG	gga:431254

Entry 1

GEISHA Id	NKX6-3.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	CCCACAGCGACTCCAAACAG
Reverse cDNA Template Primer	AATTAACCCTCACTAAAGTCCCAGGTGCTCAGCCACTATG	cDNA Template Length	607
Forward cDNA Template Probe	show AGTCATCAGGATGCATCAGGGTACATCATGGCAGGAGATGTCCTTTTACGGCAGCTGGAATCTTGATACTCGTCCCGTA ATCCCCCCCCCAGGAGGACTGGGTGATACTCTTCATGCCTCGGTGTCATAGGTGTGCCCGCATTTGTACCTGGAGCCCC GCACTGCGCTGCGCACGACGAGGAAGGTTCCCGGGCACTCGTCTTCCGTGATTTGGAGCTGCCCCTTCCGTAACCGAGA CCTTCGCACTGTGTACTCTGGTTAAGCACGAGGTGAATATGCCAGCCGTGTTGCGCTGTGGACCTGGCAGTGCCTTTGG TCTGCTCACATGTCTTGTCCGCATCCAAGATGTAATGTCTGTGTGCAGGTTGGACGCGTGTGCTTCTTCATGTGTAGGG TGTCGGACACGTGTTCATCGGGGCCACCGGTGCTGGCGGTTGACCGTGACAGTCGGCTGCCTCTGACCCGCAGCTTCTG CCCCGCGACACATCCTCGGTGCCGGATTTAGGCAAGGCCCCCACCTGTCTGCTGTAATAGACACCTGGTGACCTTTTTC CGTTACTTCCACCTGTGTGGGGTTAGCTGGGAACGAGGCTGTTGTTTGGAGTCCCTAATTACACCCCTCCCTTAATGCC AGCATTTATTATGTGCCATGGGGCTAGACCTCTTTGCTAAATGTCCTTATAGTCGGGTAACCGATATTGCGGTGGTCCC CGTCCTGTCGTGGGTCTTTAGGTAAATTCATGCTTTCTCTCTTGTTTCTTTTATCTTTTTTCCCGGAATTATATATTTT GTTATACACAATATCCTGTTTGTGTTTTGATTAAGATATCCTTTTTTCTACTCATTTCGTTTTACGGGTTAGTGTGTTG TTGTGTTTACACCTCTCTATTGAGAATAATGAGTACCTCGTTTCTCTTTCCCCCCTTGGGAGTCGCGTAACTGCATTTT GCTGTGCTCTTCCTCACATAATTCTTGTTTGTTTAGACCTTCACCCTTCGCTGTACTTTTTCTATAGTAAATATTTATG TTGTCCATTCCATGCTGTTTTCTTTCTCTTCTTTTGTTTGTGGTAGTCTAATCGACTTCTCACGTAATTCTTTTATTTT TAAGATTTTAATATTTAATATTGTGCACTCTATCCCCCAGTTCTCTTTAACGTAATTGGTAACTTTGTATGTATATATC AGCATTCTCGTTTATCCACCTTTATTTGTTGTGTAATTTCTACTTTTTATTTGTACTTTCTTATTAAGTTCATGTTCTT ATTTTTTGATGTAACTCATCTGTTTTAANATTGTTGTTCTTTATTTCTGTATTCTGTGGTTATTCTCTTTTGTACTATA TCTTGCTCTGCTTCTTTTGTTTATATTTTTTCAGTAATGCTTATCTGTCTCATGTGTCATTTGTACAGTTCTGCGTTCT ACNACTTACTCGAGGACTGATTTCTGCTATTTCGTAGTGATACTACCTTCTCTTTATGCATCGTACTTAGCTTACGTAG TGTTGAGTGCATCTGTGCTTCTACCTCTCACGTACACATCTGTACATACTCACACTTCGATCATTGAGTCNATCTCTTA TATCTATACTANCTGTCGACGATGATATCGTCTGTTTGAGCTGTTTATCGACGATGCAAGTCTCGCATATGTCTGTTTC ATGTTGTTGCACCTCTTATGGAAGTCACTGTCGTGTTGTAGTTANTTTAGTCAACTCAGAATTC

Stage

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Location (click to highlight)

Comments (click to highlight)

7-12

stage 12

Endoderm

Trapping in neural tube

13-18

stage 18

Endoderm
Neural Plate/Tube
Pancreas
Spinal Cord
Stomach

19-24

stage 19

stage 22

stage 24

Endoderm
Neural Plate/Tube
Pancreas
Spinal Cord
Stomach

stage 25

Endoderm
Eye
Pancreas
Spinal Cord
Stomach

Entry 2

GEISHA Id	NKX6-3.Pedersen.2005	Data Source	Publication
Complete cDNA Template Probe	show ATGGACGCCAACCTGCCAGGCACCTTCCTGCTCAGCGGCCCTTCACTGGCCCCCTTCCCTGAGGCCAAGGCACCTGTCT GCCAGTACTCGGTGCAGAGCTCTTTCTACAAGCTGGGTCCCCCCGGGCTGGGTGCCCAGCTGGCTGCCGGCACCCCACA CGGCATCTCCGACATCCTCGGCCGGCCCACAGCGACTCCAAACAGCAGCCTCCTGCCCAGCTACCCCCACACAGGTGGA TTTAATGGACTGAGCTCCCCAGGCGTCTATTATGGGCCGCAGGTGGGGGCCCTCCCTAAAGCCAGCAGCGATTATGTGC CGCGGGGCAGGAGCTGCTGGGCAGAGGCACCCGACTGGCAGGGCAGCCGGCAGTGCGGTGGCCCCCCTGCACACCTGAC TGACAGCCTGCACAAGAAGAAGCACACGCGTCCAACCTTCACAGGGCATCAGATCTTCGCTCTGGAGAAGACATTTGAG CAGACCAAGTACCTGGCAGGGCCAGAGCGGGCACGGCTGGCATATTCCCTCGGCATGACTGAGTCCCAGGTGAAGGTTT GGTTCCAGAACCGGCGCACCAAATGGAGGAAGAAGAGTGCCCTGGAGCCCTCCTCCTCCTCGCAGCGGGTGGGGGGCTC CAGTGGAGAGCGGGCAGCCTCTGAGACCGAGGATGATGAGTACAACAAGCCCCTGGACCCTGACTCGGATGATGAGAAG ATCCGGCTGCTGCTGAGGAAGCACCGTGCAGCTTTCTCGGTGCTGGGGCTGGGCACACATAGTGGCTGAGCACCTGGGA ATGGGTACTGCTGTGCCCCCACTGCAGCTCCTGCCCGGGGCTCAGGGTCTGGGAACAGCAGCAGTGAAATAAAGGCCCC TGTCCCAGCACTTATTACATGGGTCTGCAATGCTGGCTGCCTCAGAGGCTGGGCTGGGAAGGGGCTGAGGCTGGGGGGC CATGTATGGGGCAGAAAGGTCCCCCAGAGCCCTCCCCAGAGTTTCCCCAGATTGGGTGTGTGCTGGTAGCAAGAAGTGC TGTCCAAAAGTCACTCGTTAGGGCCTCTTGTTGGAACCTATTAGCAGCAAATAAATATCATTTATCTTGA
Citation	Pedersen JK, Nelson SB, Jorgensen MC, Henseleit KD, Fujitani Y, Wright CV, Sander M, Serup P; Beta Cell Biology Consortium. Endodermal expression of Nkx6 genes depends differentially on Pdx1. Dev Biol. 2005 Dec 15;288(2):487-501.
Copyright	Copyright © 2005 Elsevier Inc. All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (XM_428808).