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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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LHX5
LIM homeobox 5

Gene

Official Symbol	LHX5
Official Full Name	LIM homeobox 5
CGNC ID	6292
also known as	LIM/homeobox protein Lhx5\|LIM homeobox protein 5
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	Gallus-Browse

Sequence Information

Genomic
RNA	XM_001234552
Polypeptide	XP_001234553

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	64211			MIM:605992
Mouse	16873	ENSMUSG00000029595	All phenotypic alleles (1):Targeted, knock-out(1)	MGI:107792
Xenopus	548836, 399270			490399
Zebrafish	30465	ENSDARG00000057936	ZDB-GENE-980526-484	ZFIN:ZDB-GENE-980526-484

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	771259
Ensembl Gene
KEGG	gga:771259

Entry 1

GEISHA Id	LHX5.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	TTATAAAAGCTTGCGGCCGCAGAATATCGATGAGTCTGAGA
Reverse cDNA Template Primer	GCTCTAGAAATTAACCCTCACTAAAGGTGGTTTTCTGAGGA	cDNA Template Length	236
Reverse cDNA Template Probe	show `GTCAAGCGTCATAAGGGGGGGCTCCAAGGGTCCCAGGGGTAGTGGAACCAGGTCCTGAGTTCTGAAGGTAGCTGGGGTC GGCCGGGGACTGGGCCTGGGAGGGGGGCCCATGGGGGAAAAAGTCATAGTTGCCTCCCGGGCCGTAGTAATCACCTTGG TAATCTCCGTAGTACGTGTAGGGCGTCGAGCCAAGCATCTCAGACTCATCGATATTCT`

Stage

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Comments (click to highlight)

4-6

stage 4

stage 5

stage 6

Early Endoderm
Early Mesoderm
Lateral Plate Mesoderm
Neural Plate/Tube
Notochord
Primitive Streak

7-12

stage 7

stage 9

Blood Islands
Forebrain
Head Mesenchyme
Intermediate Mesoderm
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
Notochord
Sinus Venosus
Somites
extraembryonic endoderm

13-18

stage 13

stage 14

stage 15

stage 16

Dermomyotome
Ear/Otic Placode
Forebrain
Foregut
Head Mesenchyme
Neural Plate/Tube
Notochord
Oral Pharynx
Pharyngeal Arches and Clefts
Somatic Mesoderm
Spinal Cord
Widespread Expression

19-24

stage 21

stage 24

Dermomyotome
Hindbrain
Midbrain
Spinal Cord

stage 25

Dermomyotome
Hindbrain
Midbrain
Spinal Cord

Entry 2

GEISHA Id	LHX5.Trevers.2023	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show CTAAGCCCCCTCCTGGGCCCTTGTTCCCACCGATCCCGTTTTATCCCCGAGGAGAAGGTGGTTTTGGACCAGAATTTTG GTGATGGATGAGTGGGGATGGTGTGCGGAGCTTGGGAAACCCGGGAAGAGGCAGAAATGGGAAAAACAAACAGAAACAG AGAGAAAACCAGAGAGAACAAAACCCACCCGAGCAGTGCGGCAATGCAGGAGGGCCGAGCCCCCCCCGGCCCCGCGGTC TGAGGATGTATTATAGTTTTTGCTTCTAGTTTCTTTATTTTGTATAAAGGAGAAACAAATAAAGTATGTTTTTGTGTTT ACTGATTATTTATTGTACTTTTAGTCATCGGAAGCTCTGAGTTTTTTCTATTTTGGAGGCTGGGAAAGGGTGGAGGTGA GCAGAAGGAGAGAAGATAGAGTGGGGTGGGGGGGAAAGGGAAAAAGAGAATGGAAAAGGAAGACAAAAAGTTGTGTTCT GAGCGCACCGTGGGTTTCCTGTCCCTGCTGCCTCTTGCGGAGGTTGTCAAGTGTGACA
Comments	The complete cDNA template sequence was obtained from the information from the publication as described in Trevers et al. 2023.