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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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SREBF2
sterol regulatory element binding transcription factor 2

Gene

Official Symbol	SREBF2
Official Full Name	sterol regulatory element binding transcription factor 2
CGNC ID	49254
also known as	SREBP-2, sterol regulatory element-binding protein 2\|sterol regulatory element binding protein 2, Sterol regulatory element binding protein 2
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	XM_416222
Polypeptide	XP_416222
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.4949

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	6721	ENSG00000198911		MIM:600481
Mouse	20788	ENSMUSG00000022463		MGI:107585
Xenopus	100144677, 443980			1011359
Zebrafish	100037309	ENSDARG00000063438	ZDB-GENE-070410-8	ZFIN:ZDB-GENE-070410-8

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	395304
Ensembl Gene	ENSGALG00000011916
KEGG	gga:395304

Entry 1

GEISHA Id	ChEST722e14	Data Source	GEISHA ISH Analysis
Forward cDNA Template Probe	show ATGGAACCATTCTGACCACAATGCCAGTGATGATGGGGCAAGAAAAGGTGCCTATCAAACAAGTTCCTGGAGGTGTCAA GCAACCAGACCCACCTAAGGAAGGAGAAAGGAGAACAACTCACAACATCATTGAAAAGCGTTACCGATCCTCTATAAAT GACAAGATCATTGAGCTGAAGGACCTCATCATGGGGACAGACGCCAAGATGCACAAGTCTGGAGTCCTGAGAAAAGCCA TTGATTACATCAAATACCTGCAGCAGGCCAACCATAAGCTGAGACAGGAGAACATGGTTCTGAAGCTGGCTAACCAGAA AAACAAACTGTTGAAGGGCATTGACCTAAGCAGTCTGGTTGACAACGATGCGGACCTGAAGATAGATGACTTCAACCAG AATGTTCTTCTGATGTCTCCTCCCGCCTCTGATTCGGGATCACAGGCTGGCTTCTCCCCCTATTCCATTGATTCAGAGC CAGGAAGCCCACTCCTTGATGATGCAAAGGTTAAGGATGAACCCGACTCTCCTCCTGTGGCTCTTGGCATGGTGGACCG CTCCCGAATCCTCCTGTGTGCCCTGACATTCCTGTGCCTCTCCTTCAACCCTTTGACATCCCTTCTGGATGCCCGAGGG AGTCCGGAGTCCGACAGCCTCACGCGCCACGGCTCTGGCAGGAACATGCTGACCATTGAGTCCGACACAGGTGGATGGT TTGGCTGGATGATGCCCACGCTGATCCTGTGGCTCGTGAATGGTGTGATCGTCCTCAGCGTGTTTGTGAAGCTCCTCGT GCACGGAGAGCCAGTGACCCGGCTGCACTCGAGGTCGTCGGTCACGTTCTGGAGGCACCGCAAGCAGGCAGACCTGGAC CTGGCACGGGGGGGATTTTGCTGCGGCAGCAT
Comments	Transcript contains miR-33.

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

Area Pellucida
Primitive Streak

7-12

stage 9

stage 11

stage 12

Blood Vessels
Early Endoderm
Epiblast
Intermediate Mesoderm
Lateral Plate Mesoderm
Neural Plate/Tube
Surface Ectoderm
Widespread Expression

13-18

stage 13

stage 17

Blood Vessels
Neural Plate/Tube
Paraxial Mesoderm

19-22

stage 21

stage 22

Dermatome
Face Mesenchyme
Leg Mesenchyme
Limb Buds
Myotome
Notochord
Paraxial Mesoderm
Pharyngeal Arches and Clefts
Retina
Somites
Spinal Cord
Spinal Ganglia and Nerves
Widespread Expression
Wing Mesenchyme

Entry 2

GEISHA Id	SREBF2.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	TGTTGAAGGGCATTGACCTAAGC
Reverse cDNA Template Primer	ATTAACCCTCACTAAAGGGGAGGGGAGTTTACCTGTGATGTG	cDNA Template Length	842
Forward cDNA Template Probe	show AANGACTGAGGNACTGTGGTAGGCCAGAGCTGCGTCCCGAGCGCTGGTCTTGGCCTCNTCCTCAGAGCCCGCAGTGGCC TCTCTGGCCCTCCACTGGTGAGAGGTCCTCTTCAGCAGCCATCGCACCAGCGCTAGCTTCTGCAGGCTGTAGCGGATGA CGTTCCAGGAGAGGCTGCAGGCCAGGTCCAGGCGGGAGGCCGGCAGTGCTCGGCCCAGGACCGACAGGCAGGTCTGCAG GTTTGATGCTGCNGCAGCAAAATCCCCCCGTGCCAGGTCCAGGTCTGCCTGCTTGCGGTGCCTCCANAACGTGACCGAC GACCTCGAGTGCAGCCGGGTCACTGGCTCTCCNTGCACGAGGAGCTTCACAAACACGCTGAGGACGATCACACCATTCA CGAGCCACAGGATCAGCGTGGGCATCATCCAGCCAAACCATCCACCTGTGTCGGACTCAATGGTCAGCATGTTCCTGCC AGAGCCGTGGCGCGTGAGGCTGTCGGACTCCGGACTCCCTCGGGCATCCAGAAGGGATGTCAAAGGGTTGAAGGAGAGG CACAGGAATGTCAGGGCACACAGGAGGATTCGGGAGCGGTCCACCATGCCAAGAGCCACAGGAGGAGAGTCAGGTTCAT CCTTAACCTTTGCATCATCAAGGAGTGGGCTTCCTGGCTCTGAATCAATGGAATAGGGGGAGAAGCCAGCCTGTGATCC CGAATCAGAGGCGGGAGGAGACATCAGAAGAACATTCTGGTTGAAGTCATCTATCTTCAGGTCCGCATCGTTGTCAACC AGACTGCTTANGTCAATGCCCNTTCAACAAA

Stage

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Location (click to highlight)

Comments (click to highlight)

13-18

stage 15

stage 17

Endoderm
Head Mesenchyme
Neural Plate/Tube
Notochord
Pharyngeal Arches and Clefts
Somites
Spinal Cord

19-24

stage 23

stage 24

Endoderm
Eye
Forebrain
Head Mesenchyme
Leg
Oral Pharynx
Pharyngeal Arches and Clefts
Spinal Cord
Spinal Ganglia and Nerves
Widespread Expression
Wing

stage 25

Endoderm
Eye
Head Mesenchyme
Leg
Neural Plate/Tube
Pharyngeal Arches and Clefts
Spinal Cord
Spinal Ganglia and Nerves
Widespread Expression
Wing

Entry 3

GEISHA Id	SREPB2.Adams.2008	Data Source	Publication
Complete cDNA Template Probe	show ATGTCCCGTGGAACCAACCGGCCCCAAACGTTCCCTTTCCTCCTTGCAGAGATGTTGCAGTTCGTCAGCAACCAGGCAG GGGACTTCCCGGACCTGTTTTCGGACCCTCTGTGCGGCACCTTCCAGGGTGGCGGTGGCGGTGGTGGCAGTGGCACGGG CGTTCTGGTCCAGCCTCAGATCATCAAGACGGACTCCCTCGTGCTGACCACGCTGAAGACGGACGGCAATCCTGTCATG GCTGCAGTGCAGAACCCAGCGCTCACCGCGCTCACCACTCCCATCCAGACCACAGCACTGCAGACCCTTGTTGGGAGCA ATGGAACCATTCTGACCACAATGCCAGTGATGATGGGGCAAGAAAAGGTGCCTATCAAACAAGTTCCTGGAGGTGTCAA GCAACCAGACCCACCTAAGGAAGGAGAAAGGAGAACAACTCACAACATCATTGAAAAGCGTTACCGATCCTCTATAAAT GACAAGATCATTGAGCTGAAGGACCTCATCATGGGGACAGACGCCAAGATGCACAAGTCTGGAGTCCTGAGAAAAGCCA TTGATTACATCAAATACCTGCAGCAGGCCAACCATAAGCTGAGACAGGAGAACATGGTTCTGAAGCTGGCTAACCAGAA AAACAAACTGTTGAAGGGCATTGACCTAAGCAGTCTGGTTGACAACGATGCGGACCTGAAGATAGATGACTTCAACCAG AATGTTCTTCTGATGTCTCCTCCCGCCTCTGATTCGGGATCACAGGCTGGCTTCTCCCCCTATTCCATTGATTCAGAGC CAGGAAGCCCACTCCTTGATGATGCAAAGGTTAAGGATGAACCTGACTCTCCTCCTGTGGCTCTTGGCATGGTGGACCG CTCCCGAATCCTCCTGTGTGCCCTGACATTCCTGTGCCTCTCCTTCAACCCTTTGACATCCCTTCTGGATGCCCGAGGG AGTCCGGAGTCCGACAGCCTCACGCGCCACGGCTCTGGCAGGAACATGCTGACCATTGAGTCCGACACAGGTGGATGGT TTGGCTGGATGATGCCCACGCTGATCCTGTGGCTCGTGAATGGTGTGATCGTCCTCAGCGTGTTTGTGAAGCTCCTCGT GCACGGAGAGCCAGTGACCCGGCTGCACTCGAGGTCGTCGGTCACGTTCTGGAGGCACCGCAAGCAGGCAGACCTGGAC CTGGCACGGGGGGATTTTGCTGCGGCAGCATCAAACCTGCAGACCTGCCTGTCGGTCCTGGGCCGAGCACTGCCGGCCT CCCGCCTGGACCTGGCCTGCAGCCTCTCCTGGAACGTCATCCGCTACAGCCTGCAGAAGCTAGCGCTGGTGCGGTGGCT GCTGAAGAGGACCTCTCACCAGTGGAGGGCCAGAGAGGCCACTGCGGGCTCTGAGGACGAGGCCAAGACCAGCGCTCGG GACGCAGCTCTGGCCTACCACAAGCTCCATCAGCTCCACATCACAGGTAAACTCCCCTCCAGCTCCGCTTACTCCGGTT TGCACATGGCCCTGTGTGCCGTCAATCTGGCCGAGTGTGCCGAAGAGAAGATCCCGCCCAGCACAATGGCTGAAATCCA CCTGACGGCTGCAGTTGGCCTGAAGACCCGCTGCGGAGGCAAGCTGGGCTTCCTGGCGAGCTATTTCCTAAGCCAGGCG CAGAGCCTGTGCAGCTCGGAGCGCAGCGCCATCCCCGACTCGCTGCGTTGGCTGTGCCACCCTCTGGGACAGAAGTTCT TTGTGGAGCGAAGCTGGACGGTGAAGTCTGCTGCCAAGGAGAGCCTGTACTGCACCCAGAGGAACCCCGCGGATCCCAT AGCACAAGTTCATCAGGCGTTCTGTGAGAACCTGCTGGAGAGAGCAGTGGATTCCCTTGTGAAGCCTCAGACCAGGAAA GAGGTGGTGGGACAAGAGGAGGACGAACCGTGCGAGTTCTCCAGCGCGATGGAATACCTGAAATTGCTCAACTCTTTCC TGGACTCAATGGGAAGTGGAGCACCGCCCTTTGCCAGCAGTTCTATGCTGAAATCAGCCCTGGGCCCGGATGTGGTGTG CAGGTGGTGGTCGGCAGCAGTCGCTATGGCCATCGGTTGGCTCAGAGGGGATGACACAGCTGTGAGGTCACGTTTCAGC ATAGTGGAGCGCCTGCCGAAGTCCCTGGAGATGTCTGAGAATGCCCTGGTGAAAGCCACCTTCCACCTGTGCAAAGCCA TGCAGGCGTCGCTGTCATCGAAGGCGGATGGGCAGCAGAGCTCACTGAGTCACTGCGAGAGGGCCAGCAGCCACCTGTG GAACAGCCTCAACATGAGCAGCGGTGCCTCCAGCACTCCCCTCAGCAACGTGATCCAGCTGCTGGCCTGTGACTTGCTG CTGTCCCTCCGCACCAGCCTGTGGCAGAAGCAGGCGAGCAGCAGCCAGGCGCTGGGTGAGACCTACCATGCCTCACCCC CCGAGCTCACTGGCTTCCAGCGTGACCTCGGCAGCCTGCGCAAGCTGGCCCACGGCTTCAGGCCCGCGTACCGCAAGGT CTTCCTTCACGAGGCCACCGTGCGCCTGATGGCGGGGGCCAGCCCTACCCGCACCCACCAGCTGCTGGAGCACAGTCTC AGGCGTCGCACAACCCAGAACAGCAAGCAAGGGGAGCTGGACACGCTGCCAGGGCAGAGGGAGCGAGCCACTGCCATCC TGCTGGCCTGCCGCCACCTCCCACTCTCTTTCCTGTCCTCGCCCAGCCAGCGTGCCGTCCTGCTGGCTGAGGCTGCACG CACGCTGGAGAAGGTGGGGGACAAGCGCTCGTGCAACGACTGCCAACAGATGATTGTCAAGCTGAGTGGGGGCACAGCC ATCGCCGCCTCCTAACACCTCACCAGCCCTCAGCCCGGACTTCCTCCATGTTGCAAAAGGAATTGGGGAAAAAAAAATG CAAGGAAAAAGGAGAGGGAGGGAAAAAGAAAAAAAAAAAAAGAAAAAAAAAAAAAA
Citation	Adams MS, Gammill LS, Bronner-Fraser M. Discovery of transcription factors and other candidate regulators of neural crest development. Dev Dyn. 2008 Apr;237(4):1021-33.
Copyright	Copyright © 2008 Wiley-Liss, Inc.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (XM_416222).