GEISHA - A Chicken Embryo Gene Expression Database
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FGF19
fibroblast growth factor 19

Gene
Official SymbolFGF19
Official Full Namefibroblast growth factor 19
CGNC ID5704
also known asFGF-19, fibroblast growth factor 19, fibroblast growth factor 19 , FGF19
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_204674
PolypeptideNP_990005
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.205
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human9965ENSG00000162344MIM:603891
Mouse14170ENSMUSG00000031073All phenotypic alleles (3):Targeted, knock-out(3) MGI:1096383
Xenopus100217329486498
Zebrafish100335006, 368245ENSDARG00000074833ZDB-GENE-030729-32ZFIN:ZDB-GENE-030729-32
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene395394
Ensembl Gene
KEGGgga:395394

Entry 1

GEISHA IdFGF19.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template PrimerTTATAAAAGCTTGCGGCCGCAGAATATAAGATTTTCTCCCGCTGTCTCAC
Reverse cDNA Template PrimerGCTCTAGAAATTAACCCTCACTAAAGGTTGAACTGCTCATTCCTACCAGATGcDNA Template Length812
Complete cDNA Template Probeshow
TTCTACCTGTCCGTGAGGGAATTGGTGAATTGGGATTACAGCCGTTTGAGCCAGAGGTTATCTCGCCTCTCGAAACGGA
CGCATGGATCCCTTGGTTCCACTGTCTCCAGAGGCCCCAGCTTCAGAATGCTTGATGCACACGCGGTTTAAAGAGATAC
CGCAGAATGTGCAGGTTTTGCTTCTGGTAGGATGTCTCAAACGTTTTTTCACGTTCAGTGTGGAGACGCCTTTCCGTAC
AATGTGTTGTACCTATAAGAGCTGAGTGCCCAGTTGCCATATTCGAAAGAATTGCCTCTCCGTAGTATACTGGAAAAGA
AAAATTATAAGAGCAGCTTAACAAATTCATCAGAGTTCCTCCATACTGGGGATGATAAAATACATAGCTTTGTACATCA
AATTCATTACCACATATGTTCACCGTGTTCTGTTCAATATTAAATACAGGAAATCTGCCATTCACAGGGAAGTTCACAA
CCTTGTAGACAAACATTGGACAAAACACAGTTAAGGAAGACTGAGCAAGGTGGTTATGTGAACTAAAGTAGCGCTGTTT
CTGAAAGCTCGACAACCTTCGGGAAGGCTTTCTGTTGAAAGCATCCACGAAAAACAATTCTGCTGTATATTGGCTTTTT
CTTCCCTTAGGAAAGAGGGGAAAGAGGAAAATATTTCTTCCTCCCCCACTGTAAGGGATACTTGGAAAACTGGATTTCA
TTTATAGGTAATTTATGTTCTACGGGATCTTCATCGTCCAGCAAACTGTCTTTACTAATGGGATCAGATGTGGGTAGGA
GTGTATACACTAGCATTTGTGT
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 4
stage 6
Early Endoderm
Early Mesoderm
Primitive Streak
 
7-12
stage 7
stage 7
stage 8
stage 8
stage 9
stage 11
stage 12
Ear/Otic Placode
Endoderm
Mesoderm
Primitive Streak
Dorsal view.
HH 7+
HH 8-
Presumptive Otic Placode
Ventral view.
13-18
stage 14
stage 16
Ear/Otic Placode
Eye
Midbrain
Pharyngeal Arches and Clefts
Somites
Tail
 
19-24
stage 20
stage 21
stage 22
Ear/Otic Placode
Eye
Forebrain
Head Mesenchyme
Heart
Hindbrain
Leg AER
Midbrain
Pharyngeal Arches and Clefts
Somites
Wing AER
 
25
stage 25
stage 25
Ear/Otic Placode
Eye
Forebrain
Hindbrain
Leg AER
Midbrain
Pharyngeal Arches and Clefts
Somites
Tail
Wing AER
 

Entry 2

GEISHA IdFGF19.Gimeno.2007Data SourcePublication
Complete cDNA Template Probeshow
GTGCCCAGTTGCCATATTCGAAAGAATTGCCTCTCCGTAGTATACTTGGAAAAGAAAAATTAAATAAGAGCAGCTTAAC
AAATTCATCAGAGTTCCTCCATTACTGTGGTGATGATAAAATACATACGTTTTGTACATCAAATTCATTACCACATATG
TTCACCTGTTGTTTCTGTTCATATATATAAATACAGGAATCTTGCCACAGGGAAGTTCCACCAACGTGTAGACAACATT
GGACGAAACCAGTTAAGGAAGACTGAGCAAGTGTGGTTATGTGAACTAAAGTTAGCGCTGTTTCTTGAAAAGCTGCTGA
CAACCTTCTGGGAAGGCTTTCTGTTGAAAGCATACCACTGAAAAAACAATTCTGCTGATATATTGTGCTTTTTCTTCCC
TTAGGAAAGAGGGGGAAGAAGAGGAAAATATTTCTTCCTTCCCCCACTGCTAAGGGATACCTTGGAAAACTGGATTTCA
TTTTATAGGCTAATTTATGTTCACTACGGGATCTTCATCGTCCAGCATAGACTTGTCTTTAATGCTAATGGGAATTCAG
CATGTGGGTAGGAGTGTATACAGAACTAGCATTTGTGTTCATCTGGTAGGAATGAGCAGTTCAAATTAGTGTCCAGATA
TAGGTTCTGCTGTATATACTCATGTATGTTGGTAGCAAATAGGAAGTCTGAAAATGGATGATGTGTAGGTCACATCAGT
TGCAAAGAACATTTCTGTGTTTTGCCTTTAACCGCCAGCAATTCTTCTAGGTCCACCCAGGCTTCATCCTGCACCGTTT
GAAACCGTGGAGATGCAATTTAGTGACTCAAACGCTGCAGAACTGAGCTGGCCATGCCGTGGTTCTTGCAGGGAGGGAT
CGTGTAGATCTCATGGCCAAAAAGCATGTCTGATGTCTTCAGTTCTGTTCTCCCCTTGTGACAATTTAACAAAGGAATA
ACCGAAGAGAAACCAAAAGAAGACAAATGTAAGGGTTCATCCACTCATTTCCAAAGGCTCGCTTATAATAGAGATTTCT
ATACAAAAAGCTCTACTGAAAACACTGGTGTTTCTTCTGACCTAGCACTTCATTGCC
CitationGimeno L, Martinez S. Expression of chick Fgf19 and mouse Fgf15 orthologs is regulated in the developing brain by Fgf8 and Shh. Dev Dyn. 2007 Aug;236(8):2285-97.
CopyrightCopyright © 2007 Wiley-Liss, Inc.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204674). The primer pair successfully used for cloning Fgf19 cDNA were those given in the paper: 5'-GTGCCCAGTTGCCATATTCG-3' as forward primer and 5'-CTGACCTAGCACTTCATTGCC-3' as reverse primer.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 8
Head Mesenchyme
Neural Plate/Tube
epibranchial placodes
13-18
stage 14
stage 16
Diencephalon
Ear/Otic Placcode
Eye
Head Mesenchyme
Isthmus/MHB
Neural Plate/Tube
Pharyngeal Arches and Clefts
epibranchial placodes
optic stalk
optic vesicle
19-24
stage 19
stage 19
stage 19
stage 19
stage 19
stage 19
stage 19
stage 20
stage 20
stage 20
stage 20
stage 20
stage 20
stage 20
stage 20
stage 20
stage 20
stage 20
stage 20
stage 20
stage 20
stage 20
stage 22
stage 22
stage 22
stage 22
stage 23
stage 24
stage 24
stage 24
stage 24
Cranial Ganglia
Diencephalon
Ear/Otic Placcode
Eye
Forebrain
Hindbrain
Isthmus/MHB
Leg AER
Lens
Midbrain
Neural Plate/Tube
Pharyngeal Arches and Clefts
Rhombomeres
Somites
Spinal Ganglia and Nerves
Tail
Wing AER
Mantle Layer
r1
25-30
stage 26
stage 26
stage 26
stage 26
stage 30
stage 30
stage 30
Diencephalon
Forebrain
Hindbrain
Isthmus/MHB
Midbrain
Neural Plate/Tube
Rhombomeres
 
31-41
stage 36
stage 36
stage 38
stage 38
stage 38
stage 41
stage 41
Cranial Ganglia
Hindbrain
Midbrain
Purkinje cell layer
caudal end of the Purkinje cell layer
hypoglossal nucleus
nuclei of the vestibular-cochlear system
pontic reticular neurons
tegmentum

Entry 3

GEISHA IdFgf19.Sanchez-Calderon.2007Data SourcePublication
Complete cDNA Template Probeshow
CACACCGCCAGCCGCACAGAGCGCCCAACCCCGTATCGCACCGCACCGCCCCGCACCGCCCGCGCAACGCCGCCGCCCG
ACCCGAGCCCGAGCCCGAGTCTGAGTCCGAGGCCGAGGCCGCCGCGGATGGGGCCGGCCCGCCCCGCCGCACCCGGCGC
TGCCCTGGCGCTGCTGGGGATCGCCGCCGCCGCCGCCGCCGCCAGGTCCCTGCCGCTGCCCGACGTCGGGGGTCCGCAC
GTCAACTACGGCTGGGGGGAACCCATCCGGCTGCGGCACCTACTACACCGCCCAGGCAAGCACGGGCTCTTCAGCTGCT
TCCTGCGCATCGGCGGCGACGGCCGGGTGGACGCTGTCGGTAGCCAGAGCCCGCAGAGTCTGTTGGAGATCCGCGCCGT
GGCGGTGCGCACCGTGGCCATCAAGGGCGTGCAGAGCTCCCGCTACCTCTGCATGGACGAGGCGGGGCGGCTGCACGGG
CAGCTCAGCTATTCCATTGAGGACTGTTCCTTTGAAGAGGAGATTCGTCCAGACGGCTACAACGTGTATAAATCAAAGA
AATACGGGATATCGGTGTCTTTGAGCAGTGCCAAACAAAGACAGCAATTCAAAGGAAAAGATTTTCTCCCGCTGTCTCA
CTTCTTACCCATGATCAACACTGTGCCAGTGGAGGTGACAGACTTTGGTGAATATGGTGATTACAGCCAGGCTTTTGAG
CCAGAGGTCTACTCATCGCCTCTCGAAACGGACAGCATGGATCCCTTTGGGATCACTTCCAAACTGTCTCCAGTGAAGA
GCCCCAGCTTTCAGAAATGACTCTGATTGCACACGCGGTTTTAAAGAGATACCGCAGAATGTTGCAGGTTTTTAGCTTC
TTGTGTAGTGATGTCTCAAACGTTTTTTTCACGTCTCAGTGTGGAGACGGCCTTTCCCGTACAATGTGTTGTACCTATA
AGAGCTGAGTGCCCAGTTGCCATATTCGAAAGAATTGCCTCTCCGTAGTATACTTGGAAAAGAAAAATTAAATAAGAGC
AGCTTAACAAATTCATCAGAGTTCCTCCATTACTGTGGTGATGATAAAATACATACGTTTTGTACATCAAATTCATTAC
CACATATGTTCACCTGTTGTTTCTGTTCATATATATAAATACAGGAATCTTGCCACAGGGAAGTTCCACCAACGTGTAG
ACAACATTGGACGAAACCAGTTAAGGAAGACTGAGCAAGTGTGGTTATGTGAACTAAAGTTAGCGCTGTTTCTTGAAAA
GCTGCTGACAACCTTCTGGGAAGGCTTTCTGTTGAAAGCATACCACTGAAAAAACAATTCTGCTGATATATTGTGCTTT
TTCTTCCCTTAGGAAAGAGGGGGAAGAAGAGGAAAATATTTCTTCCTTCCCCCACTGCTAAGGGATACCTTGGAAAACT
GGATTTCATTTTATAGGCTAATTTATGTTCACTACGGGATCTTCATCGTCCAGCATAGACTTGTCTTTAATGCTAATGG
GAATTCAGCATGTGGGTAGGAGTGTATACAGAACTAGCATTTGTGTTCATCTGGTAGGAATGAGCAGTTCAAATTAGTG
TCCAGATATAGGTTCTGCTGTATATACTCATGTATGTTGGTAGCAAATAGGAAGTCTGAAAATGGATGATGTGTAGGTC
ACATCAGTTGCAAAGAACATTTCTGTGTTTTGCCTTTAACCGCCAGCAATTCTTCTAGGTCCACCCAGGCTTCATCCTG
CACCGTTTGAAACCGTGGAGATGCAATTTAGTGACTCAAACGCTGCAGAACTGAGCTGGCCATGCCGTGGTTCTTGCAG
GGAGGGATCGTGTAGATCTCATGGCCAAAAAGCATGTCTGATGTCTTCAGTTCTGTTCTCCCCTTGTGACAATTTAACA
AAGGAATAACCGAAGAGAAACCAAAAGAAGACAAATGTAAGGGTTCATCCACTCATTTCCAAAGGCTCGCTTATAATAG
AGATTTCTATACAAAAAGCTCTACTGAAAACACTGGTGTTTCTTCTGACCTAGCACTTCATTGCCAATGCAATATTTAT
AATTAATTTATTAAATACATACCTCTGTTTATTTTGTTACTGTTATTTATGCTCAAAATTCTATTTATATACTCTTGAA
GGTGGGTTTTTTGGTTGTAACAAATTTTGCGAAGTTTTGTAATCATTAAATTGTAGGAAACAATAGCTTTTTAAATCTC
TGTTCATTATTGGTAGTGTAATATGTACATTTGCAATAAAAAATCGTCTTCAGTAAAAAAAAAAAAAAAAAAAAAAAAA
CitationSánchez-Calderón H, Francisco-Morcillo J, Martín-Partido G, Hidalgo-Sánchez M (2007). Fgf19 expression patterns in the developing chick inner ear.Gene Expr Patterns. Jan;7(1-2):30-8. Epub 2006 May 19.
CopyrightCopyright © 2007 Elsevier B.V. All rights reserved.
CommentsThe Fgf-19 probe was obtained by screening a stage 11/12 chick lambda ZAP II cDNA library using a mouse Fgf-15 cDNA probe . The sequence has been deposited in GenBank (accession number AF315355).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 14
stage 14
stage 15
Ear/Otic Placcode
Figure includes HH stages 14 and 15.
19-24
stage 20
stage 20
stage 20
stage 20
stage 24
stage 24
stage 24
stage 24
stage 24
stage 24
Ear/Otic Placcode
3A10 immunoreaction
Anterior crista
Basilar papilla
Figure compares 4 probes
Macula lagena
Macula utriculi
25-30
stage 27
stage 27
stage 27
stage 27
stage 27
stage 27
stage 27
Cranial Ganglion
Ear/Otic Placcode
3A10 immunoreaction
Acoustic-vestibular ganglion
Anterior crista
Basilar papilla
Figure compares several genes
Macula lagena
Macula utriculi
31-34
stage 34
stage 34
stage 34
stage 34
Ear/Otic Placcode
3A10 immunoreaction
Anterior crista
Lateral crista

Entry 4

GEISHA IdFGF19.Kurose.2004Data SourcePublication
Complete cDNA Template Probeshow
CCGCAGAGTCTGTTGGAGATCCGCGCCGTGGCGGTGCGCACCGTGGCCATCAAGGGCGTGCAGAGCTCCCGCTACCTCT
GCATGGACGAGGCGGGGCGGCTGCACGGGCAGCTCAGCTATTCCATTGAGGACTGTTCCTTTGAAGAGGAGATTCGTCC
AGACGGCTACAACGTGTATAAATCAAAGAAATACGGGATATCGGTGTCTTTGAGCAGTGCCAAACAAAGACAGCAATTC
AAAGGAAAAGATTTTCTCCCGCTG
CitationKurose H, Bito T, Adachi T, Shimizu M, Noji S, Ohuchi H. Expression of Fibroblast growth factor 19 (Fgf19) during chicken embryogenesis and eye development, compared with Fgf15 expression in the mouse. Gene Expr Patterns. 2004 Oct;4(6):687-93.
CopyrightReprinted with permission from Elsevier. Copyright © 2004 Elsevier B.V. All rights reserved.
CommentsAccording to the authors, "cDNA templates for ribopobes were obtained by EST sequencing of a HH stage 36 neural retina library constructed in the λZAPII phasmid vector (Stratagene) (chicken Fgf8, 0.9 kb; chicken Fgf10, 2.5 kb; chicken Fgf19, 1.9 kb) ... The obtained EST clone of chicken Fgf19 was submitted to Genbank/DDBJ under the accession number of AB111892."
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 5
Early Mesoderm
Head Mesenchyme
Head Process
Notochord
Primitive Streak
 
7-12
stage 11
Diencephalon
Ear/Otic Placcode
Endoderm
Pharyngeal Arches and Clefts
Retina
Rhombomeres
Surface Ectoderm
Optic Vesicle
Pharyngeal Pouch
r4
r5
13-18
stage 13
stage 13
stage 13
stage 14
stage 16
stage 18
Cranial Ganglion
Diencephalon
Endoderm
Eye
Hindbrain
Leg AER
Lens
Midbrain
Pharyngeal Arches and Clefts
Retina
Rhombomeres
Somites
Tail
Wing AER
Ganglia VII
Ganglia VIII
Neural Retina
Pharyngeal Pouches 1-3
Pharyngeal Pouches 1–4
Rhombic Lip
19-24
stage 20
Cranial Nerve
Dermatome
Isthmus/MHB
Leg AER
Lens
Midbrain
Myotome
Nasal Placcode/Nerve
Pharyngeal Arches and Clefts
Somites
Wing AER
Ganglia V
Ganglia VII
Ganglia VIII,
Maxillary Process
Nerve VIII in the Otocyct
Pharyngeal Pouches 1–4
Rhombic Lip
25-30
stage 26
Retina
Neural Retina
31-35
stage 31
stage 35
stage 35
Retina
Horizontal Cells
Inner Nuclear Layer
Neural Retina
Outer Nuclear Layer

Entry 5

GEISHA IdFGF19.Wright.2004Data SourcePublication
Complete cDNA Template Probeshow
CACACCGCCAGCCGCACAGAGCGCCCAACCCCGTATCGCACCGCACCGCCCCGCACCGCCCGCGCAACGCCGCCGCCCG
ACCCGAGCCCGAGCCCGAGTCTGAGTCCGAGGCCGAGGCCGCCGCGGATGGGGCCGGCCCGCCCCGCCGCACCCGGCGC
TGCCCTGGCGCTGCTGGGGATCGCCGCCGCCGCCGCCGCCGCCAGGTCCCTGCCGCTGCCCGACGTCGGGGGTCCGCAC
GTCAACTACGGCTGGGGGGAACCCATCCGGCTGCGGCACCTACTACACCGCCCAGGCAAGCACGGGCTCTTCAGCTGCT
TCCTGCGCATCGGCGGCGACGGCCGGGTGGACGCTGTCGGTAGCCAGAGCCCGCAGAGTCTGTTGGAGATCCGCGCCGT
GGCGGTGCGCACCGTGGCCATCAAGGGCGTGCAGAGCTCCCGCTACCTCTGCATGGACGAGGCGGGGCGGCTGCACGGG
CAGCTCAGCTATTCCATTGAGGACTGTTCCTTTGAAGAGGAGATTCGTCCAGACGGCTACAACGTGTATAAATCAAAGA
AATACGGGATATCGGTGTCTTTGAGCAGTGCCAAACAAAGACAGCAATTCAAAGGAAAAGATTTTCTCCCGCTGTCTCA
CTTCTTACCCATGATCAACACTGTGCCAGTGGAGGTGACAGACTTTGGTGAATATGGTGATTACAGCCAGGCTTTTGAG
CCAGAGGTCTACTCATCGCCTCTCGAAACGGACAGCATGGATCCCTTTGGGATCACTTCCAAACTGTCTCCAGTGAAGA
GCCCCAGCTTTCAGAAATGACTCTGATTGCACACGCGGTTTTAAAGAGATACCGCAGAATGTTGCAGGTTTTTAGCTTC
TTGTGTAGTGATGTCTCAAACGTTTTTTTCACGTCTCAGTGTGGAGACGGCCTTTCCCGTACAATGTGTTGTACCTATA
AGAGCTGAGTGCCCAGTTGCCATATTCGAAAGAATTGCCTCTCCGTAGTATACTTGGAAAAGAAAAATTAAATAAGAGC
AGCTTAACAAATTCATCAGAGTTCCTCCATTACTGTGGTGATGATAAAATACATACGTTTTGTACATCAAATTCATTAC
CACATATGTTCACCTGTTGTTTCTGTTCATATATATAAATACAGGAATCTTGCCACAGGGAAGTTCCACCAACGTGTAG
ACAACATTGGACGAAACCAGTTAAGGAAGACTGAGCAAGTGTGGTTATGTGAACTAAAGTTAGCGCTGTTTCTTGAAAA
GCTGCTGACAACCTTCTGGGAAGGCTTTCTGTTGAAAGCATACCACTGAAAAAACAATTCTGCTGATATATTGTGCTTT
TTCTTCCCTTAGGAAAGAGGGGGAAGAAGAGGAAAATATTTCTTCCTTCCCCCACTGCTAAGGGATACCTTGGAAAACT
GGATTTCATTTTATAGGCTAATTTATGTTCACTACGGGATCTTCATCGTCCAGCATAGACTTGTCTTTAATGCTAATGG
GAATTCAGCATGTGGGTAGGAGTGTATACAGAACTAGCATTTGTGTTCATCTGGTAGGAATGAGCAGTTCAAATTAGTG
TCCAGATATAGGTTCTGCTGTATATACTCATGTATGTTGGTAGCAAATAGGAAGTCTGAAAATGGATGATGTGTAGGTC
ACATCAGTTGCAAAGAACATTTCTGTGTTTTGCCTTTAACCGCCAGCAATTCTTCTAGGTCCACCCAGGCTTCATCCTG
CACCGTTTGAAACCGTGGAGATGCAATTTAGTGACTCAAACGCTGCAGAACTGAGCTGGCCATGCCGTGGTTCTTGCAG
GGAGGGATCGTGTAGATCTCATGGCCAAAAAGCATGTCTGATGTCTTCAGTTCTGTTCTCCCCTTGTGACAATTTAACA
AAGGAATAACCGAAGAGAAACCAAAAGAAGACAAATGTAAGGGTTCATCCACTCATTTCCAAAGGCTCGCTTATAATAG
AGATTTCTATACAAAAAGCTCTACTGAAAACACTGGTGTTTCTTCTGACCTAGCACTTCATTGCCAATGCAATATTTAT
AATTAATTTATTAAATACATACCTCTGTTTATTTTGTTACTGTTATTTATGCTCAAAATTCTATTTATATACTCTTGAA
GGTGGGTTTTTTGGTTGTAACAAATTTTGCGAAGTTTTGTAATCATTAAATTGTAGGAAACAATAGCTTTTTAAATCTC
TGTTCATTATTGGTAGTGTAATATGTACATTTGCAATAAAAAATCGTCTTCAGTAAAAAAAAAAAAAAAAAAAAAAAAA
CitationWright TJ, Ladher R, McWhirter J, Murre C, Schoenwolf GC, Mansour SL (2004). Mouse FGF15 is the ortholog of human and chick FGF19, but is not uniquely required for otic induction. Dev Biol. 2004 May 1;269(1):264-75.
CopyrightCopyright © 2004 Published by Elsevier Inc.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204674).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 5
Ear/Otic Placcode
Early Mesoderm
Primitive Streak
Presumptive Otic Placode
7-12
stage 7
stage 8
stage 10
stage 11
Ear/Otic Placcode
Early Mesoderm
Ectoderm
Endoderm
Mesoderm
Neural Plate/Tube
Pharyngeal Arches and Clefts
Primitive Streak
Presumptive Otic Placode
Ventral Neurectoderm
19-22
stage 22
Central Nervous System
Cranial Ganglion
Ear/Otic Placcode
Eye
Leg AER
Pharyngeal Arches and Clefts
Wing AER
Vestibuloacoustic Ganglion

Entry 6

GEISHA IdFGF19.Paxton.2010Data SourcePublication
Complete cDNA Template Probeshow
CACACCGCCAGCCGCACAGAGCGCCCAACCCCGTATCGCACCGCACCGCCCCGCACCGCCCGCGCAACGCCGCCGCCCG
ACCCGAGCCCGAGCCCGAGTCTGAGTCCGAGGCCGAGGCCGCCGCGGATGGGGCCGGCCCGCCCCGCCGCACCCGGCGC
TGCCCTGGCGCTGCTGGGGATCGCCGCCGCCGCCGCCGCCGCCAGGTCCCTGCCGCTGCCCGACGTCGGGGGTCCGCAC
GTCAACTACGGCTGGGGGGAACCCATCCGGCTGCGGCACCTACTACACCGCCCAGGCAAGCACGGGCTCTTCAGCTGCT
TCCTGCGCATCGGCGGCGACGGCCGGGTGGACGCTGTCGGTAGCCAGAGCCCGCAGAGTCTGTTGGAGATCCGCGCCGT
GGCGGTGCGCACCGTGGCCATCAAGGGCGTGCAGAGCTCCCGCTACCTCTGCATGGACGAGGCGGGGCGGCTGCACGGG
CAGCTCAGCTATTCCATTGAGGACTGTTCCTTTGAAGAGGAGATTCGTCCAGACGGCTACAACGTGTATAAATCAAAGA
AATACGGGATATCGGTGTCTTTGAGCAGTGCCAAACAAAGACAGCAATTCAAAGGAAAAGATTTTCTCCCGCTGTCTCA
CTTCTTACCCATGATCAACACTGTGCCAGTGGAGGTGACAGACTTTGGTGAATATGGTGATTACAGCCAGGCTTTTGAG
CCAGAGGTCTACTCATCGCCTCTCGAAACGGACAGCATGGATCCCTTTGGGATCACTTCCAAACTGTCTCCAGTGAAGA
GCCCCAGCTTTCAGAAATGACTCTGATTGCACACGCGGTTTTAAAGAGATACCGCAGAATGTTGCAGGTTTTTAGCTTC
TTGTGTAGTGATGTCTCAAACGTTTTTTTCACGTCTCAGTGTGGAGACGGCCTTTCCCGTACAATGTGTTGTACCTATA
AGAGCTGAGTGCCCAGTTGCCATATTCGAAAGAATTGCCTCTCCGTAGTATACTTGGAAAAGAAAAATTAAATAAGAGC
AGCTTAACAAATTCATCAGAGTTCCTCCATTACTGTGGTGATGATAAAATACATACGTTTTGTACATCAAATTCATTAC
CACATATGTTCACCTGTTGTTTCTGTTCATATATATAAATACAGGAATCTTGCCACAGGGAAGTTCCACCAACGTGTAG
ACAACATTGGACGAAACCAGTTAAGGAAGACTGAGCAAGTGTGGTTATGTGAACTAAAGTTAGCGCTGTTTCTTGAAAA
GCTGCTGACAACCTTCTGGGAAGGCTTTCTGTTGAAAGCATACCACTGAAAAAACAATTCTGCTGATATATTGTGCTTT
TTCTTCCCTTAGGAAAGAGGGGGAAGAAGAGGAAAATATTTCTTCCTTCCCCCACTGCTAAGGGATACCTTGGAAAACT
GGATTTCATTTTATAGGCTAATTTATGTTCACTACGGGATCTTCATCGTCCAGCATAGACTTGTCTTTAATGCTAATGG
GAATTCAGCATGTGGGTAGGAGTGTATACAGAACTAGCATTTGTGTTCATCTGGTAGGAATGAGCAGTTCAAATTAGTG
TCCAGATATAGGTTCTGCTGTATATACTCATGTATGTTGGTAGCAAATAGGAAGTCTGAAAATGGATGATGTGTAGGTC
ACATCAGTTGCAAAGAACATTTCTGTGTTTTGCCTTTAACCGCCAGCAATTCTTCTAGGTCCACCCAGGCTTCATCCTG
CACCGTTTGAAACCGTGGAGATGCAATTTAGTGACTCAAACGCTGCAGAACTGAGCTGGCCATGCCGTGGTTCTTGCAG
GGAGGGATCGTGTAGATCTCATGGCCAAAAAGCATGTCTGATGTCTTCAGTTCTGTTCTCCCCTTGTGACAATTTAACA
AAGGAATAACCGAAGAGAAACCAAAAGAAGACAAATGTAAGGGTTCATCCACTCATTTCCAAAGGCTCGCTTATAATAG
AGATTTCTATACAAAAAGCTCTACTGAAAACACTGGTGTTTCTTCTGACCTAGCACTTCATTGCCAATGCAATATTTAT
AATTAATTTATTAAATACATACCTCTGTTTATTTTGTTACTGTTATTTATGCTCAAAATTCTATTTATATACTCTTGAA
GGTGGGTTTTTTGGTTGTAACAAATTTTGCGAAGTTTTGTAATCATTAAATTGTAGGAAACAATAGCTTTTTAAATCTC
TGTTCATTATTGGTAGTGTAATATGTACATTTGCAATAAAAAATCGTCTTCAGTAAAAAAAAAAAAAAAAAAAAAAAAA
CitationPaxton CN, Bleyl SB, Chapman SC, Schoenwolf GC. Identification of differentially expressed genes in early inner ear development. Gene Expr Patterns. 2010 Jan;10(1):31-43. Epub 2009 Nov 11.
Copyright 2009 Elsevier B.V. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_204674).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 6
stage 6
Hensen's Node
Primitive Streak
 
7-10
stage 7
stage 7
stage 8
stage 10
Ear/Otic Placode
Early Endoderm
Early Mesoderm
Primitive Streak
Tail
 

Entry 7

GEISHA IdFGF19.Ladher.2005Data SourcePublication
Complete cDNA Template Probeshow
CACACCGCCAGCCGCACAGAGCGCCCAACCCCGTATCGCACCGCACCGCCCCGCACCGCCCGCGCAACGCCGCCGCCCG
ACCCGAGCCCGAGCCCGAGTCTGAGTCCGAGGCCGAGGCCGCCGCGGATGGGGCCGGCCCGCCCCGCCGCACCCGGCGC
TGCCCTGGCGCTGCTGGGGATCGCCGCCGCCGCCGCCGCCGCCAGGTCCCTGCCGCTGCCCGACGTCGGGGGTCCGCAC
GTCAACTACGGCTGGGGGGAACCCATCCGGCTGCGGCACCTACTACACCGCCCAGGCAAGCACGGGCTCTTCAGCTGCT
TCCTGCGCATCGGCGGCGACGGCCGGGTGGACGCTGTCGGTAGCCAGAGCCCGCAGAGTCTGTTGGAGATCCGCGCCGT
GGCGGTGCGCACCGTGGCCATCAAGGGCGTGCAGAGCTCCCGCTACCTCTGCATGGACGAGGCGGGGCGGCTGCACGGG
CAGCTCAGCTATTCCATTGAGGACTGTTCCTTTGAAGAGGAGATTCGTCCAGACGGCTACAACGTGTATAAATCAAAGA
AATACGGGATATCGGTGTCTTTGAGCAGTGCCAAACAAAGACAGCAATTCAAAGGAAAAGATTTTCTCCCGCTGTCTCA
CTTCTTACCCATGATCAACACTGTGCCAGTGGAGGTGACAGACTTTGGTGAATATGGTGATTACAGCCAGGCTTTTGAG
CCAGAGGTCTACTCATCGCCTCTCGAAACGGACAGCATGGATCCCTTTGGGATCACTTCCAAACTGTCTCCAGTGAAGA
GCCCCAGCTTTCAGAAATGACTCTGATTGCACACGCGGTTTTAAAGAGATACCGCAGAATGTTGCAGGTTTTTAGCTTC
TTGTGTAGTGATGTCTCAAACGTTTTTTTCACGTCTCAGTGTGGAGACGGCCTTTCCCGTACAATGTGTTGTACCTATA
AGAGCTGAGTGCCCAGTTGCCATATTCGAAAGAATTGCCTCTCCGTAGTATACTTGGAAAAGAAAAATTAAATAAGAGC
AGCTTAACAAATTCATCAGAGTTCCTCCATTACTGTGGTGATGATAAAATACATACGTTTTGTACATCAAATTCATTAC
CACATATGTTCACCTGTTGTTTCTGTTCATATATATAAATACAGGAATCTTGCCACAGGGAAGTTCCACCAACGTGTAG
ACAACATTGGACGAAACCAGTTAAGGAAGACTGAGCAAGTGTGGTTATGTGAACTAAAGTTAGCGCTGTTTCTTGAAAA
GCTGCTGACAACCTTCTGGGAAGGCTTTCTGTTGAAAGCATACCACTGAAAAAACAATTCTGCTGATATATTGTGCTTT
TTCTTCCCTTAGGAAAGAGGGGGAAGAAGAGGAAAATATTTCTTCCTTCCCCCACTGCTAAGGGATACCTTGGAAAACT
GGATTTCATTTTATAGGCTAATTTATGTTCACTACGGGATCTTCATCGTCCAGCATAGACTTGTCTTTAATGCTAATGG
GAATTCAGCATGTGGGTAGGAGTGTATACAGAACTAGCATTTGTGTTCATCTGGTAGGAATGAGCAGTTCAAATTAGTG
TCCAGATATAGGTTCTGCTGTATATACTCATGTATGTTGGTAGCAAATAGGAAGTCTGAAAATGGATGATGTGTAGGTC
ACATCAGTTGCAAAGAACATTTCTGTGTTTTGCCTTTAACCGCCAGCAATTCTTCTAGGTCCACCCAGGCTTCATCCTG
CACCGTTTGAAACCGTGGAGATGCAATTTAGTGACTCAAACGCTGCAGAACTGAGCTGGCCATGCCGTGGTTCTTGCAG
GGAGGGATCGTGTAGATCTCATGGCCAAAAAGCATGTCTGATGTCTTCAGTTCTGTTCTCCCCTTGTGACAATTTAACA
AAGGAATAACCGAAGAGAAACCAAAAGAAGACAAATGTAAGGGTTCATCCACTCATTTCCAAAGGCTCGCTTATAATAG
AGATTTCTATACAAAAAGCTCTACTGAAAACACTGGTGTTTCTTCTGACCTAGCACTTCATTGCCAATGCAATATTTAT
AATTAATTTATTAAATACATACCTCTGTTTATTTTGTTACTGTTATTTATGCTCAAAATTCTATTTATATACTCTTGAA
GGTGGGTTTTTTGGTTGTAACAAATTTTGCGAAGTTTTGTAATCATTAAATTGTAGGAAACAATAGCTTTTTAAATCTC
TGTTCATTATTGGTAGTGTAATATGTACATTTGCAATAAAAAATCGTCTTCAGTAAAAAAAAAAAAAAAAAAAAAAAAA
CitationLadher RK, Wright TJ, Moon AM, Mansour SL, Schoenwolf GC. FGF8 initiates inner ear induction in chick and mouse. Genes Dev. 2005 Mar 1;19(5):603-13.
Copyright© 2005 by Cold Spring Harbor Laboratory Press
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_001031546).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 6
Paraxial Mesoderm
Primitive Streak
 
7-8
stage 8
Ear/Otic Placode
Paraxial Mesoderm
Primitive Streak
 

Entry 8

GEISHA IdFGF19.Abello.2010Data SourcePublication
Complete cDNA Template Probeshow
CACACCGCCAGCCGCACAGAGCGCCCAACCCCGTATCGCACCGCACCGCCCCGCACCGCCCGCGCAACGCCGCCGCCCG
ACCCGAGCCCGAGCCCGAGTCTGAGTCCGAGGCCGAGGCCGCCGCGGATGGGGCCGGCCCGCCCCGCCGCACCCGGCGC
TGCCCTGGCGCTGCTGGGGATCGCCGCCGCCGCCGCCGCCGCCAGGTCCCTGCCGCTGCCCGACGTCGGGGGTCCGCAC
GTCAACTACGGCTGGGGGGAACCCATCCGGCTGCGGCACCTACTACACCGCCCAGGCAAGCACGGGCTCTTCAGCTGCT
TCCTGCGCATCGGCGGCGACGGCCGGGTGGACGCTGTCGGTAGCCAGAGCCCGCAGAGTCTGTTGGAGATCCGCGCCGT
GGCGGTGCGCACCGTGGCCATCAAGGGCGTGCAGAGCTCCCGCTACCTCTGCATGGACGAGGCGGGGCGGCTGCACGGG
CAGCTCAGCTATTCCATTGAGGACTGTTCCTTTGAAGAGGAGATTCGTCCAGACGGCTACAACGTGTATAAATCAAAGA
AATACGGGATATCGGTGTCTTTGAGCAGTGCCAAACAAAGACAGCAATTCAAAGGAAAAGATTTTCTCCCGCTGTCTCA
CTTCTTACCCATGATCAACACTGTGCCAGTGGAGGTGACAGACTTTGGTGAATATGGTGATTACAGCCAGGCTTTTGAG
CCAGAGGTCTACTCATCGCCTCTCGAAACGGACAGCATGGATCCCTTTGGGATCACTTCCAAACTGTCTCCAGTGAAGA
GCCCCAGCTTTCAGAAATGACTCTGATTGCACACGCGGTTTTAAAGAGATACCGCAGAATGTTGCAGGTTTTTAGCTTC
TTGTGTAGTGATGTCTCAAACGTTTTTTTCACGTCTCAGTGTGGAGACGGCCTTTCCCGTACAATGTGTTGTACCTATA
AGAGCTGAGTGCCCAGTTGCCATATTCGAAAGAATTGCCTCTCCGTAGTATACTTGGAAAAGAAAAATTAAATAAGAGC
AGCTTAACAAATTCATCAGAGTTCCTCCATTACTGTGGTGATGATAAAATACATACGTTTTGTACATCAAATTCATTAC
CACATATGTTCACCTGTTGTTTCTGTTCATATATATAAATACAGGAATCTTGCCACAGGGAAGTTCCACCAACGTGTAG
ACAACATTGGACGAAACCAGTTAAGGAAGACTGAGCAAGTGTGGTTATGTGAACTAAAGTTAGCGCTGTTTCTTGAAAA
GCTGCTGACAACCTTCTGGGAAGGCTTTCTGTTGAAAGCATACCACTGAAAAAACAATTCTGCTGATATATTGTGCTTT
TTCTTCCCTTAGGAAAGAGGGGGAAGAAGAGGAAAATATTTCTTCCTTCCCCCACTGCTAAGGGATACCTTGGAAAACT
GGATTTCATTTTATAGGCTAATTTATGTTCACTACGGGATCTTCATCGTCCAGCATAGACTTGTCTTTAATGCTAATGG
GAATTCAGCATGTGGGTAGGAGTGTATACAGAACTAGCATTTGTGTTCATCTGGTAGGAATGAGCAGTTCAAATTAGTG
TCCAGATATAGGTTCTGCTGTATATACTCATGTATGTTGGTAGCAAATAGGAAGTCTGAAAATGGATGATGTGTAGGTC
ACATCAGTTGCAAAGAACATTTCTGTGTTTTGCCTTTAACCGCCAGCAATTCTTCTAGGTCCACCCAGGCTTCATCCTG
CACCGTTTGAAACCGTGGAGATGCAATTTAGTGACTCAAACGCTGCAGAACTGAGCTGGCCATGCCGTGGTTCTTGCAG
GGAGGGATCGTGTAGATCTCATGGCCAAAAAGCATGTCTGATGTCTTCAGTTCTGTTCTCCCCTTGTGACAATTTAACA
AAGGAATAACCGAAGAGAAACCAAAAGAAGACAAATGTAAGGGTTCATCCACTCATTTCCAAAGGCTCGCTTATAATAG
AGATTTCTATACAAAAAGCTCTACTGAAAACACTGGTGTTTCTTCTGACCTAGCACTTCATTGCCAATGCAATATTTAT
AATTAATTTATTAAATACATACCTCTGTTTATTTTGTTACTGTTATTTATGCTCAAAATTCTATTTATATACTCTTGAA
GGTGGGTTTTTTGGTTGTAACAAATTTTGCGAAGTTTTGTAATCATTAAATTGTAGGAAACAATAGCTTTTTAAATCTC
TGTTCATTATTGGTAGTGTAATATGTACATTTGCAATAAAAAATCGTCTTCAGTAAAAAAAAAAAAAAAAAAAAAAAAA
CitationAbelló G, Khatri S, Radosevic M, Scotting PJ, Giráldez F, Alsina B., Independent regulation of Sox3 and Lmx1b by FGF and BMP signaling influences the neurogenic and non-neurogenic domains in the chick otic placode. Dev Biol. 2010 Mar 1;339(1):166-78. Epub 2010 Jan 4.
CopyrightCopyright © 2009 Elsevier Inc. All rights reserved.
CommentsAn insufficient amount of information is provided in publication to verify exact sequence used to synthesize probe, the sequence was obtained from NCBI (acc #NM_204674.1)
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
1-3
stage 1
  
7-9
stage 8
stage 9
Early Endoderm
Neural Plate/Tube
Paraxial Mesoderm
Rhombomeres
 

Entry 9

GEISHA IdFGF19.Kumar.2012BData SourcePublication
Complete cDNA Template Probeshow
CACACCGCCAGCCGCACAGAGCGCCCAACCCCGTATCGCACCGCACCGCCCCGCACCGCCCGCGCAACGCCGCCGCCCG
ACCCGAGCCCGAGCCCGAGTCTGAGTCCGAGGCCGAGGCCGCCGCGGATGGGGCCGGCCCGCCCCGCCGCACCCGGCGC
TGCCCTGGCGCTGCTGGGGATCGCCGCCGCCGCCGCCGCCGCCAGGTCCCTGCCGCTGCCCGACGTCGGGGGTCCGCAC
GTCAACTACGGCTGGGGGGAACCCATCCGGCTGCGGCACCTACTACACCGCCCAGGCAAGCACGGGCTCTTCAGCTGCT
TCCTGCGCATCGGCGGCGACGGCCGGGTGGACGCTGTCGGTAGCCAGAGCCCGCAGAGTCTGTTGGAGATCCGCGCCGT
GGCGGTGCGCACCGTGGCCATCAAGGGCGTGCAGAGCTCCCGCTACCTCTGCATGGACGAGGCGGGGCGGCTGCACGGG
CAGCTCAGCTATTCCATTGAGGACTGTTCCTTTGAAGAGGAGATTCGTCCAGACGGCTACAACGTGTATAAATCAAAGA
AATACGGGATATCGGTGTCTTTGAGCAGTGCCAAACAAAGACAGCAATTCAAAGGAAAAGATTTTCTCCCGCTGTCTCA
CTTCTTACCCATGATCAACACTGTGCCAGTGGAGGTGACAGACTTTGGTGAATATGGTGATTACAGCCAGGCTTTTGAG
CCAGAGGTCTACTCATCGCCTCTCGAAACGGACAGCATGGATCCCTTTGGGATCACTTCCAAACTGTCTCCAGTGAAGA
GCCCCAGCTTTCAGAAATGACTCTGATTGCACACGCGGTTTTAAAGAGATACCGCAGAATGTTGCAGGTTTTTAGCTTC
TTGTGTAGTGATGTCTCAAACGTTTTTTTCACGTCTCAGTGTGGAGACGGCCTTTCCCGTACAATGTGTTGTACCTATA
AGAGCTGAGTGCCCAGTTGCCATATTCGAAAGAATTGCCTCTCCGTAGTATACTTGGAAAAGAAAAATTAAATAAGAGC
AGCTTAACAAATTCATCAGAGTTCCTCCATTACTGTGGTGATGATAAAATACATACGTTTTGTACATCAAATTCATTAC
CACATATGTTCACCTGTTGTTTCTGTTCATATATATAAATACAGGAATCTTGCCACAGGGAAGTTCCACCAACGTGTAG
ACAACATTGGACGAAACCAGTTAAGGAAGACTGAGCAAGTGTGGTTATGTGAACTAAAGTTAGCGCTGTTTCTTGAAAA
GCTGCTGACAACCTTCTGGGAAGGCTTTCTGTTGAAAGCATACCACTGAAAAAACAATTCTGCTGATATATTGTGCTTT
TTCTTCCCTTAGGAAAGAGGGGGAAGAAGAGGAAAATATTTCTTCCTTCCCCCACTGCTAAGGGATACCTTGGAAAACT
GGATTTCATTTTATAGGCTAATTTATGTTCACTACGGGATCTTCATCGTCCAGCATAGACTTGTCTTTAATGCTAATGG
GAATTCAGCATGTGGGTAGGAGTGTATACAGAACTAGCATTTGTGTTCATCTGGTAGGAATGAGCAGTTCAAATTAGTG
TCCAGATATAGGTTCTGCTGTATATACTCATGTATGTTGGTAGCAAATAGGAAGTCTGAAAATGGATGATGTGTAGGTC
ACATCAGTTGCAAAGAACATTTCTGTGTTTTGCCTTTAACCGCCAGCAATTCTTCTAGGTCCACCCAGGCTTCATCCTG
CACCGTTTGAAACCGTGGAGATGCAATTTAGTGACTCAAACGCTGCAGAACTGAGCTGGCCATGCCGTGGTTCTTGCAG
GGAGGGATCGTGTAGATCTCATGGCCAAAAAGCATGTCTGATGTCTTCAGTTCTGTTCTCCCCTTGTGACAATTTAACA
AAGGAATAACCGAAGAGAAACCAAAAGAAGACAAATGTAAGGGTTCATCCACTCATTTCCAAAGGCTCGCTTATAATAG
AGATTTCTATACAAAAAGCTCTACTGAAAACACTGGTGTTTCTTCTGACCTAGCACTTCATTGCCAATGCAATATTTAT
AATTAATTTATTAAATACATACCTCTGTTTATTTTGTTACTGTTATTTATGCTCAAAATTCTATTTATATACTCTTGAA
GGTGGGTTTTTTGGTTGTAACAAATTTTGCGAAGTTTTGTAATCATTAAATTGTAGGAAACAATAGCTTTTTAAATCTC
TGTTCATTATTGGTAGTGTAATATGTACATTTGCAATAAAAAATCGTCTTCAGTAAAAAAAAAAAAAAAAAAAAAAAAA
CitationKumar M, Ray P, Chapman SC. Fibroblast growth factor and bone morphogenetic protein signaling are required for specifying prechondrogenic identity in neural crest-derived mesenchyme and initiating the chondrogenic program. Dev Dyn. 2012 Jun;241(6):1091-103
CopyrightCopyright © 2012 Wiley Periodicals, Inc.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_204674.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 8
stage 8
stage 9
stage 9
stage 10
stage 10
stage 11
stage 12
Ear/Otic Placode
Endoderm
Mesoderm
Neural Plate/Tube
Pharyngeal Arches and Clefts
Somites
HH9- stage embryos
pharyngeal endoderm
13-18
stage 13
stage 13
stage 14
Endoderm
Pharyngeal Arches and Clefts
 
19
stage 19
stage 19
Cranial Ganglia
Eye
Pharyngeal Arches and Clefts
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.205

Mouse

EmageMGI:1096383
EurexpressMGI:1096383
MGI GXDMGI:1096383

Frog

Xenbase486498

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-030729-32
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