GEISHA - A Chicken Embryo Gene Expression Database
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CAPN3
calpain 3

The human orthologue of this gene is associated
with the following human disease:
Gene
Official SymbolCAPN3
Official Full Namecalpain 3
CGNC ID51929
also known asp94, calpain-3|CANP 3|calcium-activated neutral proteinase 3|calpain 3, (p94)|calpain L3|calpain p94|muscle-specific calcium-activated neutral protease 3
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_001004405
PolypeptideNP_001004405
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.72
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human825ENSG00000092529MIM:253600MIM:114240
Mouse12335ENSMUSG00000079110All phenotypic alleles (6):Targeted, knock-out(1) Targeted, other(4) Gene trapped(1) MGI:107437
Xenopus100497532, 1001256655875738
Zebrafish447832, 100034405ENSDARG00000041864ZDB-GENE-040912-97, ZDB-GENE-041001-149ZFIN:ZDB-GENE-040912-97, ZFIN:ZDB-GENE-041001-149
Gene Ontology
Molecular Functioncalcium-dependent cysteine-type endopeptidase activity, calcium ion binding, catalytic activity, more...ligase regulator activity, peptidase activity, protein complex scaffold, sodium ion binding, structural constituent of muscle, titin binding
Biological Processcellular response to calcium ion, cellular response to salt stress, muscle structure development, more...myofibril assembly, negative regulation of apoptotic process, negative regulation of protein sumoylation, negative regulation of transcription, DNA-templated, positive regulation of NF-kappaB transcription factor activity, positive regulation of proteolysis, positive regulation of release of sequestered calcium ion into cytosol, positive regulation of satellite cell activation involved in skeletal muscle regeneration, positive regulation of transcription, DNA-templated, protein complex assembly, protein localization to membrane, proteolysis, regulation of catalytic activity, regulation of I-kappaB kinase/NF-kappaB signaling, response to calcium ion, response to muscle activity, sarcomere organization, self proteolysis
Cellular Componentcytoplasm, cytosol, myofibril, nucleus, plasma membrane, protein complex, T-tubule, Z disc
Links to other databases
Entrez Gene423233
Ensembl Gene
KEGGgga:423233
GEISHA IdCAPN3Data SourceGEISHA ISH Analysis
Forward cDNA Template PrimerCAGCCAGAAAGTCCCCATCAAG
Reverse cDNA Template PrimerAATTAACCCTCACTAAAGGTCCATTCCATTCCACCTGTCCcDNA Template Length832
Complete cDNA Template Probeshow
CAGCCAGAAAGTCCCCATCAAGTTTGAATGGAAAAGACCACGTGAAATCTGTGAGAATCCACGATTTATTATCGGCGGA
GCCAACAGAACAGATATCTGCCAAGGAGAATTAGGCGATTGCTGGTTCCTGGCTGCCATTGCTTGCCTGACACTGAATA
AAAAACTGCTCTGCAGAGTCATACCTCATGACCAGTCCTTCATACAGAACTATGCTGGCATCTTTCACTTCCAGTTTTG
GCGCTACGGAGACTGGGTGGATGTCATCATTGATGACTGCCTACCCACATACAACAACCAGCTGGTCTTCACCAAATCC
TCCCAGCGCAATGAGTTCTGGAGTGCTCTCCTGGAAAAGGCCTATGCAAAACTCCATGGATCCTATGAAGCTTTGAAAG
GAGGCAACACCACAGAGGCCATGGAGGATTTCACTGGAGGGGTGACAGAGTTCTATGAGATAAAGGATGCTCCTAAAGA
TATCTATAAAATCATGAAACATGCCATTGCCAGAGGATCCCTCATGGCCAGCTCCATTGATGACAACCTAGGCTTCTCC
TACGGAGCAGCTCCTCGAAGTGACATTGGAGAACTGATTGCTCGAATGGTGAAGAACCTAGAAAATGCACAGATGACTT
ACTCCACTGTGGACTACCAGGGGACGGATGAAAGGCCAGCCTGGACCATAATGCCAATGCAGTATGAAACCCGGATGTC
TTGTGGGCTGGTCAAAGGTCACGCATACTCTGTCACAGCTGTGGAAGAGACAACATATAAAGGGGAAAAGATGCGTCTG
GTAAGGCTGAGAAACCCGTGGGGACAGGTGGAATGGAATGGA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 19
stage 19
stage 19
stage 23
stage 23
Foregut
Head Mesenchyme
Myotome
Notochord
Sclerotome
Sinus Venosus
trapping in heart and head
25
stage 25
Foregut
Head Mesenchyme
Lung
Pharyngeal Arches and Clefts
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.72

Mouse

EmageMGI:107437
EurexpressMGI:107437
MGI GXDMGI:107437

Frog

Xenbase5875738

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-040912-97, ZDB-GENE-041001-149
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