GEISHA - A Chicken Embryo Gene Expression Database
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SLC1A3
solute carrier family 1 member 3

The human orthologue of this gene is associated
with the following human disease:
Gene
Official SymbolSLC1A3
Official Full Namesolute carrier family 1 member 3
CGNC ID2616
also known asexcitatory amino acid transporter 1|Na+-dependent glutamate/aspartate transporter|solute carrier family 1 (glial high affinity glutamate transporter), member 3
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNAXM_425011
PolypeptideXP_425011
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.49289
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly34251FBgn0026439
Human6507ENSG00000079215MIM:612656MIM:600111
Mouse20512ENSMUSG00000005360All phenotypic alleles (7):Targeted, knock-out(3) Targeted, other(3) Gene trapped(1) MGI:99917
Xenopus100127700, 398856975312
Zebrafish100334080, 556181, 323439ENSDARG00000043148, ENSDARG00000026218ZDB-GENE-090708-3, ZDB-GENE-030131-2159ZFIN:ZDB-GENE-090708-3, ZFIN:ZDB-GENE-030131-2159
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene395443
Ensembl GeneENSGALG00000003582
KEGGgga:395443

Entry 1

GEISHA IdSLC1A3.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template Primer5’-TCTCCAGTGAAGCCCCTTCT-3’
Reverse cDNA Template Primer5’-AATTAACCCTCACTAAAGGGGGCTGAGCAAGGGAATCTT-3’cDNA Template Length876
Complete cDNA Template Probeshow
TCTCCAGTGAAGCCCCTTCTTAGAAATATTAATTATATATGTTCTTCTTTTAACTTTTATTGTTGTAGAGGTTAAACTG
GAAAGTTTTATAATACAGCTACAGTTAGGGAAATGAAGAAATATTAATCAGAAGGCAGAGTAATATTGAGTGATTGTTT
TTATTTAAATGTTCATTTTTCTTCTTTCTTCCTTGCCCAACAAAATAAAATCTGACTATATGAATGAAGGATTCCCTTG
TAATGCCCCAAGTGCAACACAAAAAATATTCAGTATGCTGCTTTTGTCTTTAAGAGAACATAAATGTGGTGTATTTCAC
CGTAATGAAAATGTCAACATCCTGATAGAAGGTAAATTTTTTCCCATGTTTAGAGCAACAAGGCAAGACTGTTTTGTTT
AGGACTGAAAACTCCTGCCCATCTTCTCCAGTTGATTAGTCCAGACAGTAGGAGCAGGAACTCTTCAGTGATTGAAGTG
AGCAGGGTTTAACTCAGAGCATTGAGTGGTCAAACCTACAAAGCTCTTGTATTAATCTCTCACTGAAAGAAAGCAAGTG
TGACTTTTACGTTTTTGCTAACAGAATGCAAATCTAGGATATAGATAGACATTTTCTGATATGTGTAATTAGAGATATT
TTTATATAGATACTGTATTCAAAATGTGTGTATAAATTTTAACTGTAGAATGTACAGCATAACGATTTAATTTTTGTTA
AGATTCTGTTTGGAAATACATTGCAAAGACATAATGTAAATGGCTGTCTTCCTATGACATCAGCTGAGAAAAATGAATT
GTTTCACAAAATATGCGATCTTTTTTTATACTAACTTTGTTTCTTATGGAAATCAGGTATTATAGAAAGATTCCCTTGC
TCAGCCC
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 11
Unlabeled
 
13-18
stage 17
Unlabeled
 
19-24
stage 19
stage 23
stage 23
Head Mesenchyme
Sclerotome
Unlabeled
 
25-26
stage 26
stage 26
stage 26
Head Mesenchyme
Lung
Pharyngeal Arches and Clefts
Sclerotome
Spinal Cord
Spinal Ganglia and Nerves
 

Entry 2

GEISHA IdGLAST/SLC1A3.Domowicz.2008Data SourcePublication
Complete cDNA Template Probeshow
CAGGCCTTAAAAGACTTCTTTGATAGCCTTAATGAGGCTATCATGAGACTGGTAGCTCTAATCATGTGGTATGCTCCAC
TTGGAATCCTCTTTCTGATTGCTGGAAAAATTGTTGAGATGGAAGATATGGGTGTGATTGGTGGTCAGCTTGCCATGTA
TACTGTAACAGTTATAATCGGTTTGCTTATTCACGCTGTCATAGTCCTACCTCTGCTGTACTTCCTAATCACTCGTAAG
AACCCTTGGGTATTTATTGGAGGCCTAATCCAGGCTCTGGTCACAGCTTTGGGAACATCTTCCAGTTCTGCAACACTGC
CTGTTACATTTAAGTGTCTAGAAGAAATAAATGGAGTGGACAAACGAGTTACAAGATTTGTACTGCCAGTTGGTGCTAC
CATTAATATGGATGGAACTGCATTATATGAGGCTTTGGCTGCAATTTTCATTGCACAGGTTAACAACTTTGATCTGAAC
TTTGGGCAGATTATCACAATCAGCATCACAGCTACAGCTGCCAGTATTGGGGCTGCGGGCATTCCTCAAGCTGGGCTGG
TCACCATGGTCATTGTGCTTACATCAGTAGGTTTGCCTACGGATGATATCACTCTTATCATTGCAGTGGACTGGTTCTT
GGATCGTCTCCGTACCACTACCAATGTCTTGGGAGACTCCATTGGAGCAGGGATTGTTGAACACTTATCACGGCATGAG
CTGAAGAACAGGGATGCCGAGATGGGGAATTCTGTGATAGAGGAGAATGAAATGAAGAAACC
CitationDomowicz MS, Sanders TA, Ragsdale CW, Schwartz NB. Aggrecan is expressed by embryonic brain glia and regulates astrocyte development. Dev Biol. 2008 Mar 1;315(1):114-24. Epub 2008 Jan 22.
CopyrightCopyright © 2008 Published by Elsevier Inc.
CommentsSpecific probe sequence used: nt 1053–1765 of NCBI accession number XM425011.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
31-34
stage 34
stage 34
Hindbrain
 

Entry 3

GEISHA IdGLAST.Domowicz.2011Data SourcePublication
Complete cDNA Template Probeshow
ATCATGTGGTATGCTCCACTTGGAATCCTCTTTCTGATTGCTGGAAAAATTGTTGAGATGGAAGATATGGGTGTGATTG
GTGGTCAGCTTGCCATGTATACTGTAACAGTTATAATCGGTTTGCTTATTCACGCTGTCATAGTCCTACCTCTGCTGTA
CTTCCTAATCACTCGTAAGAACCCTTGGGTATTTATTGGAGGCCTAATCCAGGCTCTGGTCACAGCTTTGGGAACATCT
TCCAGTTCTGCAACACTGCCTGTTACATTTAAGTGTCTAGAAGAAATAAATGGAGTGGACAAACGAGTTACAAGATTTG
TACTGCCAGTTGGTGCTACCATTAATATGGATGGAACTGCATTATATGAGGCTTTGGCTGCAATTTTCATTGCACAGGT
TAACAACTTTGATCTGAACTTTGGGCAGATTATCACAATCAGCATCACAGCTACAGCTGCCAGTATTGGGGCTGCGGGC
ATTCCTCAAGCTGGGCTGGTCACCATGGTCATTGTGCTTACATCAGTAGGTTTGCCTACGGATGATATCACTCTTATCA
TTGCAGTGGACTGGTTCTTGGATCGTCTCCGTACCACTACCAATGTCTTGGGAGACTCCATTGGAGCAGGGATTGTTGA
ACACTTATCACGGCATGAGCTGAAGAACAGGGATGCCGAGATGGGGAATTCTGTGATAGAGGAGAATGAAATGAAGAAA
C
CitationDomowicz MS, Henry JG, Wadlington N, Navarro A, Kraig RP, Schwartz NB. Astrocyte precursor response to embryonic brain injury. Brain Res. 2011 May 10;1389:35-49. Epub 2011 Mar 9.
CopyrightCopyright © 2011, Elsevier
CommentsTemplate sequence taken from Domowicz, 2008. Nt1053–1765 were used from clone acc# XM_425011.2.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
31-41
stage 37
stage 37
stage 41
stage 41
Mesencephalon
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.49289

Mouse

Emage
EurexpressMGI:99917
MGI GXDMGI:99917

Frog

Xenbase975312

Fruit Fly

BDGPFBgn0026439

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-090708-3, ZDB-GENE-030131-2159
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