Geisha

home

contact

A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

Quick Search

Data Class

Enter Text:

Gene Family QuickSearch

	Transcription Factors
	Growth Factors
	Receptors
	MicroRNAs

Human Disease Gene Search

	Downloads
	Protocols
	About GEISHA
	Contact Us

	Transgenic Birds
	Model Organism Databases
	Gene Expression Databases
	Genomic Resources
	Anatomical Atlases
	Chicken Stage Series

NEUROG2
neurogenin 2

Gene

Official Symbol	NEUROG2
Official Full Name	neurogenin 2
CGNC ID	49383
also known as	NGN2/ATH4A, neurogenin-2, neurogenin-2\|atonal-like protein 4a
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_204796
Polypeptide	NP_990127
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.315

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	63973	ENSG00000178403		MIM:606624
Mouse	11924	ENSMUSG00000027967	All phenotypic alleles (7):Targeted, knock-out(2) Targeted, other(5)	MGI:109619
Xenopus	100493110, 398061, 398062			491039
Zebrafish

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	395577
Ensembl Gene
KEGG	gga:395577

Entry 1

GEISHA Id	NGN2.Dude.2009	Data Source	Publication
Complete cDNA Template Probe	show CCGGGCCGCTCCGACGCCGCCGGGGCGCGTGCCAGCGCCCCCCGACCGCCCGACGGCCGTCGACCAGCGGCCGCGCCCC CCTCTCCCCCGCCCCCGCAGGATGCCGGTGAAGGCGGAGAGCCCGGCGCCCGCGGCGGAGGACGAACTGCTGCTGCTGC GCCTCGCCTCGCCCGCCCCCTCGGCCTCGCTGCCGTCCAGCGCCGGCGAGGAGGACGAGGACGAGGAGGACGGGCGGCC GAGGCGGCTGCAGGAGGGCGCTCGGCGGGCGGGGCGGCAGCGAGGGCCCCCGCGGGCGGCGCGCACGGCGGAAACGGCG CAGCGCATCAAGCGGAGCCGGCGGCTGAAAGCCAACAACCGCGAGCGCAACCGCATGCACAACCTGAACGCGGCGCTGG ACGCGCTGCGCGACTGCGTGCCCACCTTCCCCGAGGACGCCAAGCTCACCAAGATCGAGACGCTGCGCTTCGCCCACAA CTACATCTGGGCGCTCACCGAGACGCTGCGCCTGGCCGGGGCCGCCCGCCTGGGGGGCGCCGCCGACGCCGCGCCCGGG GCGGCCGCCGAGGGCAGCCCCTCGCCCGCCTCGTCGTGGAGCGGCGGCGCCAGCCCCGCGCCCTCCGCCTCGCCCTACG CCTGCACTTTATCGCCCGGCAGCCCCGCCGGCTCCGCCTCGGACGCCGAGCACTGGCCGCCCCCGCGGGGCCGCTTCGC CCCGCCGCCGCCGCCCCACCGCTGCCTCTAACGCGGCCCGGGCGGCCCTCGCTCCTCCGACGTGCACTTTGCCCGGCTC TGCCCCTCGCCGCTCCGCAGCTGTCTCCGTGATTTACGAGCGGGGGAGCGGAGAAAAAAAAAAACAAGTTAAAAAAAAG AAGAAGAAAAAGTTGTGTTGTTAGGGGTCCAGGTTAGAAGTCATTGTATAATTAGTAGGCTTTGTCAGGGCTGAATGCA AGCGTGGAAATTTAGGCTGAACTCTCTTATCAAAAGGAAAAACTGTAGAGGGAAGGGAAGGGGTGGGTGGGAGGGAGGA GCGCCTCATGCATATATTTATTTCGACCTTTAGGGGACAAGGAACTCCCCCCTTCTTTCAGGAGATTAAAAATAAATCA ACGGACTGAAAACCCAAACAGACACGGGACATTACAGCGATCCGCCACACACGTGTTCACATTTATTTATTATAAAGAA AGATTTCATGGAAAAGATGTATTTTTTGTATAATTTACAGAGTCTATTCTAGTATGTATTTACGGCTGAAGAGCAAAGG GATTGTTTTCCTCATAAAGTATAAATAAAATATTTAATTTTCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Citation	Dude CM, Kuan CY, Bradshaw JR, Greene ND, Relaix F, Stark MR, Baker CV. Activation of Pax3 target genes is necessary but not sufficient for neurogenesis in the ophthalmic trigeminal placode. Dev Biol. 2009 Feb 15;326(2):314-26. Epub 2008 Dec 7.
Copyright	Copyright © 2009 Published by Elsevier Inc.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_204796.1)

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

1-3

stage 1

7-9

stage 8

stage 9

Ear/Otic Placode

Entry 2

GEISHA Id	NGN2.Ma.2008	Data Source	Publication
Complete cDNA Template Probe	show CCGGGCCGCTCCGACGCCGCCGGGGCGCGTGCCAGCGCCCCCCGACCGCCCGACGGCCGTCGACCAGCGGCCGCGCCCC CCTCTCCCCCGCCCCCGCAGGATGCCGGTGAAGGCGGAGAGCCCGGCGCCCGCGGCGGAGGACGAACTGCTGCTGCTGC GCCTCGCCTCGCCCGCCCCCTCGGCCTCGCTGCCGTCCAGCGCCGGCGAGGAGGACGAGGACGAGGAGGACGGGCGGCC GAGGCGGCTGCAGGAGGGCGCTCGGCGGGCGGGGCGGCAGCGAGGGCCCCCGCGGGCGGCGCGCACGGCGGAAACGGCG CAGCGCATCAAGCGGAGCCGGCGGCTGAAAGCCAACAACCGCGAGCGCAACCGCATGCACAACCTGAACGCGGCGCTGG ACGCGCTGCGCGACTGCGTGCCCACCTTCCCCGAGGACGCCAAGCTCACCAAGATCGAGACGCTGCGCTTCGCCCACAA CTACATCTGGGCGCTCACCGAGACGCTGCGCCTGGCCGGGGCCGCCCGCCTGGGGGGCGCCGCCGACGCCGCGCCCGGG GCGGCCGCCGAGGGCAGCCCCTCGCCCGCCTCGTCGTGGAGCGGCGGCGCCAGCCCCGCGCCCTCCGCCTCGCCCTACG CCTGCACTTTATCGCCCGGCAGCCCCGCCGGCTCCGCCTCGGACGCCGAGCACTGGCCGCCCCCGCGGGGCCGCTTCGC CCCGCCGCCGCCGCCCCACCGCTGCCTCTAACGCGGCCCGGGCGGCCCTCGCTCCTCCGACGTGCACTTTGCCCGGCTC TGCCCCTCGCCGCTCCGCAGCTGTCTCCGTGATTTACGAGCGGGGGAGCGGAGAAAAAAAAAAACAAGTTAAAAAAAAG AAGAAGAAAAAGTTGTGTTGTTAGGGGTCCAGGTTAGAAGTCATTGTATAATTAGTAGGCTTTGTCAGGGCTGAATGCA AGCGTGGAAATTTAGGCTGAACTCTCTTATCAAAAGGAAAAACTGTAGAGGGAAGGGAAGGGGTGGGTGGGAGGGAGGA GCGCCTCATGCATATATTTATTTCGACCTTTAGGGGACAAGGAACTCCCCCCTTCTTTCAGGAGATTAAAAATAAATCA ACGGACTGAAAACCCAAACAGACACGGGACATTACAGCGATCCGCCACACACGTGTTCACATTTATTTATTATAAAGAA AGATTTCATGGAAAAGATGTATTTTTTGTATAATTTACAGAGTCTATTCTAGTATGTATTTACGGCTGAAGAGCAAAGG GATTGTTTTCCTCATAAAGTATAAATAAAATATTTAATTTTCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Citation	Ma W, Yan RT, Mao W, Wang SZ. Neurogenin3 promotes early retinal neurogenesis. Mol Cell Neurosci. 2009 Feb;40(2):187-98. Epub 2008 Nov 6.
Copyright	Copyright © 2008 Elsevier Inc. All rights reserved.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_204796 ).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

19-24

stage 20

Forebrain
Retina

31-32

stage 32

Retina

Entry 3

GEISHA Id	NGN2.Frowein.2002	Data Source	Publication
Complete cDNA Template Probe	show CCGGGCCGCTCCGACGCCGCCGGGGCGCGTGCCAGCGCCCCCCGACCGCCCGACGGCCGTCGACCAGCGGCCGCGCCCC CCTCTCCCCCGCCCCCGCAGGATGCCGGTGAAGGCGGAGAGCCCGGCGCCCGCGGCGGAGGACGAACTGCTGCTGCTGC GCCTCGCCTCGCCCGCCCCCTCGGCCTCGCTGCCGTCCAGCGCCGGCGAGGAGGACGAGGACGAGGAGGACGGGCGGCC GAGGCGGCTGCAGGAGGGCGCTCGGCGGGCGGGGCGGCAGCGAGGGCCCCCGCGGGCGGCGCGCACGGCGGAAACGGCG CAGCGCATCAAGCGGAGCCGGCGGCTGAAAGCCAACAACCGCGAGCGCAACCGCATGCACAACCTGAACGCGGCGCTGG ACGCGCTGCGCGACTGCGTGCCCACCTTCCCCGAGGACGCCAAGCTCACCAAGATCGAGACGCTGCGCTTCGCCCACAA CTACATCTGGGCGCTCACCGAGACGCTGCGCCTGGCCGGGGCCGCCCGCCTGGGGGGCGCCGCCGACGCCGCGCCCGGG GCGGCCGCCGAGGGCAGCCCCTCGCCCGCCTCGTCGTGGAGCGGCGGCGCCAGCCCCGCGCCCTCCGCCTCGCCCTACG CCTGCACTTTATCGCCCGGCAGCCCCGCCGGCTCCGCCTCGGACGCCGAGCACTGGCCGCCCCCGCGGGGCCGCTTCGC CCCGCCGCCGCCGCCCCACCGCTGCCTCTAACGCGGCCCGGGCGGCCCTCGCTCCTCCGACGTGCACTTTGCCCGGCTC TGCCCCTCGCCGCTCCGCAGCTGTCTCCGTGATTTACGAGCGGGGGAGCGGAGAAAAAAAAAAACAAGTTAAAAAAAAG AAGAAGAAAAAGTTGTGTTGTTAGGGGTCCAGGTTAGAAGTCATTGTATAATTAGTAGGCTTTGTCAGGGCTGAATGCA AGCGTGGAAATTTAGGCTGAACTCTCTTATCAAAAGGAAAAACTGTAGAGGGAAGGGAAGGGGTGGGTGGGAGGGAGGA GCGCCTCATGCATATATTTATTTCGACCTTTAGGGGACAAGGAACTCCCCCCTTCTTTCAGGAGATTAAAAATAAATCA ACGGACTGAAAACCCAAACAGACACGGGACATTACAGCGATCCGCCACACACGTGTTCACATTTATTTATTATAAAGAA AGATTTCATGGAAAAGATGTATTTTTTGTATAATTTACAGAGTCTATTCTAGTATGTATTTACGGCTGAAGAGCAAAGG GATTGTTTTCCTCATAAAGTATAAATAAAATATTTAATTTTCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Citation	Frowein J, Campbell K, Götz M. Expression of Ngn1, Ngn2, Cash1, Gsh2 and Sfrp1 in the developing chick telencephalon. Mech Dev. 2002 Jan;110(1-2):249-52.
Copyright	Copyright © 2002 Elsevier Science Ireland Ltd. All rights reserved.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI NM_204796.1

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

stage 31

Telencephalon

Entry 4

GEISHA Id	Ngn2.Vieceli.2013	Data Source	Publication
Complete cDNA Template Probe	show ATGCCGGTGAAGGCGGAGAGCCCGGCGCCCGCGGCGGAGGACGAACTGCTGCTGCTGCGCCTCGCCTCGCCCGCCCCCT CGGCCTCGCTGCCGTCCAGCGCCGGCGAGGAGGACGAGGACGAGGAGGACGGGCGGCCGAGGCGGCTGCAGGAGGGCGC TCGGCGGGCGGGGCGGCAGCGAGGGCCCCCGCGGGCGGCGCGCACGGCGGAAACGGCGCAGCGCATCAAGCGGAGCCGG CGGCTGAAAGCCAACAACCGCGAGCGCAACCGCATGCACAACCTGAACGCGGCGCTGGACGCGCTGCGCGACTGCGTGC CCACCTTCCCCGAGGACGCCAAGCTCACCAAGATCGAGACGCTGCGCTTCGCCCACAACTACATCTGGGCGCTCACCGA GACGCTGCGCCTGGCCGGGGCCGCCCGCCTGGGGGGCGCCGCCGACGCCGCGCCCGGGGCGGCCGCCGAGGGCAGCCCC TCGCCCGCCTCGTCGTGGAGCGGCGGCGCCAGCCCCGCGCCCTCCGCCTCGCCCTACGCCTGCACTTTATCG
Citation	Vieceli FM, Simões-Costa M, Turri JA, Kanno T, Bronner M, Yan CY. The transcription factor chicken Scratch2 is expressed in a subset of early postmitotic neural progenitors. Gene Expr Patterns. 2013 Jun-Jul;13(5-6):189-96. DOI: 10.1016/j.gep.2013.03.004.
Copyright	Copyright © 2013 Elsevier B.V.
Comments	Authors indicated the probe for Ngn2 was synthesized from 101–646 nucleotides of NCBI sequence NM_204796 and provided by E. Farley. Above sequence was extracted from NCBI (NM_204796.1).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

stage 25

Spinal Cord
Spinal Ganglia and Nerves

all

Entry 5

GEISHA Id	Ngn2.Joshi.2019	Data Source	Publication
Complete cDNA Template Probe	show CCGGGCCGCTCCGACGCCGCCGGGGCGCGTGCCAGCGCCCCCCGACCGCCCGACGGCCGTCGACCAGCGGCCGCGCCCC CCTCTCCCCCGCCCCCGCAGGATGCCGGTGAAGGCGGAGAGCCCGGCGCCCGCGGCGGAGGACGAACTGCTGCTGCTGC GCCTCGCCTCGCCCGCCCCCTCGGCCTCGCTGCCGTCCAGCGCCGGCGAGGAGGACGAGGACGAGGAGGACGGGCGGCC GAGGCGGCTGCAGGAGGGCGCTCGGCGGGCGGGGCGGCAGCGAGGGCCCCCGCGGGCGGCGCGCACGGCGGAAACGGCG CAGCGCATCAAGCGGAGCCGGCGGCTGAAAGCCAACAACCGCGAGCGCAACCGCATGCACAACCTGAACGCGGCGCTGG ACGCGCTGCGCGACTGCGTGCCCACCTTCCCCGAGGACGCCAAGCTCACCAAGATCGAGACGCTGCGCTTCGCCCACAA CTACATCTGGGCGCTCACCGAGACGCTGCGCCTGGCCGGGGCCGCCCGCCTGGGGGGCGCCGCCGACGCCGCGCCCGGG GCGGCCGCCGAGGGCAGCCCCTCGCCCGCCTCGTCGTGGAGCGGCGGCGCCAGCCCCGCGCCCTCCGCCTCGCCCTACG CCTGCACTTTATCGCCCGGCAGCCCCGCCGGCTCCGCCTCGGACGCCGAGCACTGGCCGCCCCCGCGGGGCCGCTTCGC CCCGCCGCCGCCGCCCCACCGCTGCCTCTAACGCGGCCCGGGCGGCCCTCGCTCCTCCGACGTGCACTTTGCCCGGCTC TGCCCCTCGCCGCTCCGCAGCTGTCTCCGTGATTTACGAGCGGGGGAGCGGAGAAAAAAAAAAACAAGTTAAAAAAAAG AAGAAGAAAAAGTTGTGTTGTTAGGGGTCCAGGTTAGAAGTCATTGTATAATTAGTAGGCTTTGTCAGGGCTGAATGCA AGCGTGGAAATTTAGGCTGAACTCTCTTATCAAAAGGAAAAACTGTAGAGGGAAGGGAAGGGGTGGGTGGGAGGGAGGA GCGCCTCATGCATATATTTATTTCGACCTTTAGGGGACAAGGAACTCCCCCCTTCTTTCAGGAGATTAAAAATAAATCA ACGGACTGAAAACCCAAACAGACACGGGACATTACAGCGATCCGCCACACACGTGTTCACATTTATTTATTATAAAGAA AGATTTCATGGAAAAGATGTATTTTTTGTATAATTTACAGAGTCTATTCTAGTATGTATTTACGGCTGAAGAGCAAAGG GATTGTTTTCCTCATAAAGTATAAATAAAATATTTAATTTTCATAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
Citation	Piyush Joshi, Andrew J Darr, Isaac Skromne. CDX4 regulates the progression of neural maturation in the spinal cord. Dev Biol. 2019 May 15;449(2):132-142. Epub 2019 Feb 28. DOI: 10.1016/j.ydbio.2019.02.014.
Copyright	Copyright © 2019 Elsevier Inc.
Comments	Authors indicated the probe was made from Ngn2 gene construct provided by Dr. Francois Medevielle. As insufficient information is provided in publication to verify exact sequence used to synthesize probe, above sequence was obtained from NCBI (NM_204796.1).