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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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PAX2
paired box 2

The human orthologue of this gene is associated
with the following human disease:

Optic nerve coloboma with renal disease

Gene

Official Symbol	PAX2
Official Full Name	paired box 2
CGNC ID	4240
also known as	PAX-2, paired box protein Pax-2\|paired box gene 2\|paired-box containing protein Pax-2, PAX2, paired box gene 2
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_204793
Polypeptide	NP_990124
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.313

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly	43825			FBgn0005561
Human	5076	ENSG00000075891	MIM:120330	MIM:167409
Mouse	18504	ENSMUSG00000004231	All phenotypic alleles (7):Spontaneous(1) Chemically induced(2) Targeted, knock-out(2) Targeted, other(2)	MGI:97486
Xenopus	733478, 379520, 398347			486800
Zebrafish	60638, 30425	ENSDARG00000032578, ENSDARG00000028148	ZDB-GENE-001030-4, ZDB-GENE-990415-8	ZFIN:ZDB-GENE-001030-4, ZFIN:ZDB-GENE-990415-8

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	395574
Ensembl Gene
KEGG	gga:395574

Entry 1

GEISHA Id	Pax2.Noden.2006	Data Source	Publication
Complete cDNA Template Probe	show TTGCTTTCGATTGCTTTGCTTTGGTTTGTTATTTTGGGGTTTTGGGTTTTTTTTCGTTTTTTTTTTTTTTGTTTGTTTG TTTGCTTATTTTTTTCTCCCCTAAGTCTTGAAGTTGAGTTTTAGAGGCGACACGGCGGCTTCAGCCGATTTCTTCCCTT TCCTTTGCCTCCCCATGGATATGCACTGCAAGGCAGACCCCTTCTCAGCAATGCACCCAGGGCACGGGGGTGTGAACCA GCTCGGGGGGGTGTTTGTGAACGGCAGGCCCCTACCTGACGTGGTGAGACAAAGGATAGTGGAGCTGGCTCACCAGGGG GTGCGACCCTGTGACATTTCCAGGCAGCTGCGGGTCAGCCACGGCTGTGTCAGCAAGATCCTGGGCAGGTACTACGAGA CGGGGAGCATCAAGCCCGGCGTGATCGGCGGCTCCAAGCCCAAAGTAGCGACCCCCAAAGTAGTGGATAAAATCGCCGA GTACAAGAGACAAAACCCCACCATGTTCGCTTGGGAGATTCGGGACAGGCTACTGGCCGAGGGCATCTGCGACAACGAC ACGGTCCCCAGCGTCTCCTCCATAAACAGGATTATCAGAACCAAAGTTCAGCAACCTTTCCACCCAACACCAGATGGGA GCGGAACCGGTGTGGCTGCACCAGGACATACTATCGTGCCCAGCACAGCATCCCCTCCCGTCTCCAGTGCCTCCAATGA TCCAGTGGGCTCTTACTCCATTAACGGGATCCTGGGGATTCCTCGGTCGAATGGCGAGAAGAGGAAACGTGATGAAGAT GTATCCGAGGGCTCTGTTCCCAACGGAGACTCCCAGAGCAGCGTGGACAGTTTGCGGAAGCACCTTCGTGGCGACACTT TCACCCAGCAGCAGCTGGAAGCTTTAGATCGAGTTTTTGAGCGTCCTTCTTACCCTGACGTCTTTCAAACATCAGAGCA CATCAAATCTGAGCAGGGTAATGAGTACTCCCTCCCAGCTCTGACCCCTGGTCTCGATGAAGTCAAATCAAGTCTATCC ACCTCTGCTAACCCAGACCTGGGGACAAATGTGTCAGGACCCCAGACGTACCCTGTGGTGACCGGTCGTGATATGGCAA GCACCACCTTGCCTGGCTACCCACCCCATGTTCCCCCAACTGGACAAGGCAGCTACCCAACCTCAACTCTGGCAGGAAT GGTTCCTGGGAGCGAATTCTCAGGGAACCCCTACAGCCACCCTCAGTACACAACCTACAATGAGGCCTGGCGGTTCAGC AACCCTGCATTACTAAGTTCCCCTTATTATTATAGTGCCACATCCCGGGGCTCCGCACCTCCCACTGCTGCCGCTGCCT ATGACCGCCACTAGCTACCATGGAAACCACATGAAACTGCAGGGTGACAGCTTAGGCCTCCATATTGTACCTGTCTGAC CCATCCCTCCGCCCCTGGGAAGGTGAAGAGAGCCTTGCCGTGCCTCCCCGCAGCACACCTCCCTCTCCACCGCTCCGAG CGCTCACCATGCCAGACTGAGAACCCCGTTCTCCCTGCATCCCCCTGCACCCTGAGGCACCTCAGGAGCCCTCCACAGC ACCTCGGCACAGCTCGACCTCCTGCACTCCCAAGACTCGAGGGGAACTGGCAGCCATTGCTTGCGGGACCCCATTCTCC TGGGAGCGGTATGGGCAGGGGGAAGTAGGGAGACAGCTGCTCACAAAACACTGATCCCCAAAGATACGCTTCTCTGTGG TGAACTCTTCAGAATGCGTAACCTGTGACCATCGTCCTGTTTCCCAGGACAGAAGGAACAGCCTGGCTAGAGCAGAGAT GGTGGCACTAAGCCCTGCCCATCTGGCAAACAAGAGAAGGACCAAGTGACTTTCTGTTACTCCCCACGCACCTCATCCC ACCCCCCGGCATGGCTCCTGGCGCTGCTGCGCCCTGCGCGGTGCCCTCGAGGCCAGAGCTGGGCTGAACCTCACTCACA CCCACAAC
Citation	Noden DM, Francis-West P. The differentiation and morphogenesis of craniofacial muscles. Dev Dyn. 2006 May;235(5):1194-218. Review.
Copyright	Copyright © 2006 Wiley-Liss, Inc.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204793).

Stage

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Location (click to highlight)

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13-16

stage 16

Head Mesenchyme

Head Muscles

Entry 2

GEISHA Id	PAX2.Hurtado.2006	Data Source	Publication
Complete cDNA Template Probe	show TTGCTTTCGATTGCTTTGCTTTGGTTTGTTATTTTGGGGTTTTGGGTTTTTTTTCGTTTTTTTTTTTTTTGTTTGTTTG TTTGCTTATTTTTTTCTCCCCTAAGTCTTGAAGTTGAGTTTTAGAGGCGACACGGCGGCTTCAGCCGATTTCTTCCCTT TCCTTTGCCTCCCCATGGATATGCACTGCAAGGCAGACCCCTTCTCAGCAATGCACCCAGGGCACGGGGGTGTGAACCA GCTCGGGGGGGTGTTTGTGAACGGCAGGCCCCTACCTGACGTGGTGAGACAAAGGATAGTGGAGCTGGCTCACCAGGGG GTGCGACCCTGTGACATTTCCAGGCAGCTGCGGGTCAGCCACGGCTGTGTCAGCAAGATCCTGGGCAGGTACTACGAGA CGGGGAGCATCAAGCCCGGCGTGATCGGCGGCTCCAAGCCCAAAGTAGCGACCCCCAAAGTAGTGGATAAAATCGCCGA GTACAAGAGACAAAACCCCACCATGTTCGCTTGGGAGATTCGGGACAGGCTACTGGCCGAGGGCATCTGCGACAACGAC ACGGTCCCCAGCGTCTCCTCCATAAACAGGATTATCAGAACCAAAGTTCAGCAACCTTTCCACCCAACACCAGATGGGA GCGGAACCGGTGTGGCTGCACCAGGACATACTATCGTGCCCAGCACAGCATCCCCTCCCGTCTCCAGTGCCTCCAATGA TCCAGTGGGCTCTTACTCCATTAACGGGATCCTGGGGATTCCTCGGTCGAATGGCGAGAAGAGGAAACGTGATGAAGAT GTATCCGAGGGCTCTGTTCCCAACGGAGACTCCCAGAGCAGCGTGGACAGTTTGCGGAAGCACCTTCGTGGCGACACTT TCACCCAGCAGCAGCTGGAAGCTTTAGATCGAGTTTTTGAGCGTCCTTCTTACCCTGACGTCTTTCAAACATCAGAGCA CATCAAATCTGAGCAGGGTAATGAGTACTCCCTCCCAGCTCTGACCCCTGGTCTCGATGAAGTCAAATCAAGTCTATCC ACCTCTGCTAACCCAGACCTGGGGACAAATGTGTCAGGACCCCAGACGTACCCTGTGGTGACCGGTCGTGATATGGCAA GCACCACCTTGCCTGGCTACCCACCCCATGTTCCCCCAACTGGACAAGGCAGCTACCCAACCTCAACTCTGGCAGGAAT GGTTCCTGGGAGCGAATTCTCAGGGAACCCCTACAGCCACCCTCAGTACACAACCTACAATGAGGCCTGGCGGTTCAGC AACCCTGCATTACTAAGTTCCCCTTATTATTATAGTGCCACATCCCGGGGCTCCGCACCTCCCACTGCTGCCGCTGCCT ATGACCGCCACTAGCTACCATGGAAACCACATGAAACTGCAGGGTGACAGCTTAGGCCTCCATATTGTACCTGTCTGAC CCATCCCTCCGCCCCTGGGAAGGTGAAGAGAGCCTTGCCGTGCCTCCCCGCAGCACACCTCCCTCTCCACCGCTCCGAG CGCTCACCATGCCAGACTGAGAACCCCGTTCTCCCTGCATCCCCCTGCACCCTGAGGCACCTCAGGAGCCCTCCACAGC ACCTCGGCACAGCTCGACCTCCTGCACTCCCAAGACTCGAGGGGAACTGGCAGCCATTGCTTGCGGGACCCCATTCTCC TGGGAGCGGTATGGGCAGGGGGAAGTAGGGAGACAGCTGCTCACAAAACACTGATCCCCAAAGATACGCTTCTCTGTGG TGAACTCTTCAGAATGCGTAACCTGTGACCATCGTCCTGTTTCCCAGGACAGAAGGAACAGCCTGGCTAGAGCAGAGAT GGTGGCACTAAGCCCTGCCCATCTGGCAAACAAGAGAAGGACCAAGTGACTTTCTGTTACTCCCCACGCACCTCATCCC ACCCCCCGGCATGGCTCCTGGCGCTGCTGCGCCCTGCGCGGTGCCCTCGAGGCCAGAGCTGGGCTGAACCTCACTCACA CCCACAAC
Citation	Hurtado R, Mikawa T. Enhanced sensitivity and stability in two-color in situ hybridization by means of a novel chromagenic substrate combination. Dev Dyn. 2006 Oct;235(10):2811-6.
Copyright	Copyright © 2006 Wiley-Liss, Inc.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204793).

Stage

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13-18

stage 18

Ear/Otic Placcode
Eye
Heart
Hindbrain
Limb Buds
Nephric Ducts

Entry 3

GEISHA Id	PAX2.Ishii.2007	Data Source	Publication
Complete cDNA Template Probe	show `AAGTAGCGACCCCCAAAGTAGTGGATAAAATCGCCGAGTACAAGAGACAAAACCCCACCATGTTCGCTTGGGAGATTCG GGACAGGCTACTGGCCGAGGGCATCTGCGACAACGACACGGTCCCCAGCGTCTCCTCCATAAACAGGATTATCAGAACC AAAGTTCAGCAACCTTTCCACCCAACACCAGATGGGAGCGGAACCGGTGTGGCTGCACCAGGACATACTATCGTGCCCA GCACAGCATCCCCTCCCGTCTCCAGTGCCTCCAATGATCCAGTGGGCTCTTACTCCATTAACGGGATCCTGGGGATTCC TCGGTCGAATGGCGAGAAGAGGAAACGTGATGAAGATGTATCCGAGGG`
Citation	Ishii Y, Langberg JD, Hurtado R, Lee S, Mikawa T. Induction of proepicardial marker gene expression by the liver bud. Development. 2007 Oct;134(20):3627-37. Epub 2007 Sep 12.
Copyright	Published by The Company of Biologists 2007. This material is protected by a copyright retained by the authors. Permission granted by T. Mikawa.
Comments	Sequence below was obtained from NCBI (NM_204793) using the primers given in the publication: chick/quail Pax2 (c/qPax2) forward primer, 5'-AAGTAGCGACCCCCAAAGTAGTG-3' and reverse primer 5'-CCCTCGGATACATCTTCATCACG-3'.

Stage

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13-17

stage 17

Ear/Otic Placcode
Eye
Hindbrain
Intermediate Mesoderm

Entry 4

GEISHA Id	Pax2.Sanchez-Calderon.2005	Data Source	Publication
Complete cDNA Template Probe	show TTGCTTTCGATTGCTTTGCTTTGGTTTGTTATTTTGGGGTTTTGGGTTTTTTTTCGTTTTTTTTTTTTTTGTTTGTTTG TTTGCTTATTTTTTTCTCCCCTAAGTCTTGAAGTTGAGTTTTAGAGGCGACACGGCGGCTTCAGCCGATTTCTTCCCTT TCCTTTGCCTCCCCATGGATATGCACTGCAAGGCAGACCCCTTCTCAGCAATGCACCCAGGGCACGGGGGTGTGAACCA GCTCGGGGGGGTGTTTGTGAACGGCAGGCCCCTACCTGACGTGGTGAGACAAAGGATAGTGGAGCTGGCTCACCAGGGG GTGCGACCCTGTGACATTTCCAGGCAGCTGCGGGTCAGCCACGGCTGTGTCAGCAAGATCCTGGGCAGGTACTACGAGA CGGGGAGCATCAAGCCCGGCGTGATCGGCGGCTCCAAGCCCAAAGTAGCGACCCCCAAAGTAGTGGATAAAATCGCCGA GTACAAGAGACAAAACCCCACCATGTTCGCTTGGGAGATTCGGGACAGGCTACTGGCCGAGGGCATCTGCGACAACGAC ACGGTCCCCAGCGTCTCCTCCATAAACAGGATTATCAGAACCAAAGTTCAGCAACCTTTCCACCCAACACCAGATGGGA GCGGAACCGGTGTGGCTGCACCAGGACATACTATCGTGCCCAGCACAGCATCCCCTCCCGTCTCCAGTGCCTCCAATGA TCCAGTGGGCTCTTACTCCATTAACGGGATCCTGGGGATTCCTCGGTCGAATGGCGAGAAGAGGAAACGTGATGAAGAT GTATCCGAGGGCTCTGTTCCCAACGGAGACTCCCAGAGCAGCGTGGACAGTTTGCGGAAGCACCTTCGTGGCGACACTT TCACCCAGCAGCAGCTGGAAGCTTTAGATCGAGTTTTTGAGCGTCCTTCTTACCCTGACGTCTTTCAAACATCAGAGCA CATCAAATCTGAGCAGGGTAATGAGTACTCCCTCCCAGCTCTGACCCCTGGTCTCGATGAAGTCAAATCAAGTCTATCC ACCTCTGCTAACCCAGACCTGGGGACAAATGTGTCAGGACCCCAGACGTACCCTGTGGTGACCGGTCGTGATATGGCAA GCACCACCTTGCCTGGCTACCCACCCCATGTTCCCCCAACTGGACAAGGCAGCTACCCAACCTCAACTCTGGCAGGAAT GGTTCCTGGGAGCGAATTCTCAGGGAACCCCTACAGCCACCCTCAGTACACAACCTACAATGAGGCCTGGCGGTTCAGC AACCCTGCATTACTAAGTTCCCCTTATTATTATAGTGCCACATCCCGGGGCTCCGCACCTCCCACTGCTGCCGCTGCCT ATGACCGCCACTAGCTACCATGGAAACCACATGAAACTGCAGGGTGACAGCTTAGGCCTCCATATTGTACCTGTCTGAC CCATCCCTCCGCCCCTGGGAAGGTGAAGAGAGCCTTGCCGTGCCTCCCCGCAGCACACCTCCCTCTCCACCGCTCCGAG CGCTCACCATGCCAGACTGAGAACCCCGTTCTCCCTGCATCCCCCTGCACCCTGAGGCACCTCAGGAGCCCTCCACAGC ACCTCGGCACAGCTCGACCTCCTGCACTCCCAAGACTCGAGGGGAACTGGCAGCCATTGCTTGCGGGACCCCATTCTCC TGGGAGCGGTATGGGCAGGGGGAAGTAGGGAGACAGCTGCTCACAAAACACTGATCCCCAAAGATACGCTTCTCTGTGG TGAACTCTTCAGAATGCGTAACCTGTGACCATCGTCCTGTTTCCCAGGACAGAAGGAACAGCCTGGCTAGAGCAGAGAT GGTGGCACTAAGCCCTGCCCATCTGGCAAACAAGAGAAGGACCAAGTGACTTTCTGTTACTCCCCACGCACCTCATCCC ACCCCCCGGCATGGCTCCTGGCGCTGCTGCGCCCTGCGCGGTGCCCTCGAGGCCAGAGCTGGGCTGAACCTCACTCACA CCCACAAC
Citation	Sánchez-Calderón H, Martín-Partido G, Hidalgo-Sánchez M. Pax2 expression patterns in the developing chick inner ear. Gene Expr Patterns. 2005 Aug;5(6):763-73.
Copyright	Reprinted with permission from Elsevier. Copyright © 2005 Elsevier B.V. All rights reserved.
Comments	According to authors , "The chick Pax2 probe was a PCR-amplified product from total chick embryo cDNA. The chick Pax2 fragment spans the region between amino acids 83 and 365 (Adams et al., 1992). We used XbaI and T7 RNA polymerase to obtain the antisense Pax2 probe. For the chick Bmp4 subclone (Francis et al., 1994 P.H. Francis, M.K. Richardson, P.M. Brickell and C. Tickle, Bone morphogenetic proteins and a signalling pathway that controls patterning in the developing chick limb, Development 120 (1994), pp. 209218. View Record in Scopus \| Cited By in Scopus (320)Francis et al., 1994), we used ClaI and T7, and XbaI and T3 enzymes to generate antisense and sense probes, respectively. All riboprobes were labeled with digoxigenin-d-UTP (Roche) according to the manufacturer's instructions." As information provided was insufficient to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM 204793)

Stage

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19-24

stage 20

stage 24

Ear/Otic Placcode

3A10 immunoreaction
anterior crista
medial wall
posterior Bmp4-positive patch

25-30

stage 27

Ear/Otic Placcode

31-34

stage 34

Ear/Otic Placcode

Entry 5

GEISHA Id	Pax2.Maden.2007	Data Source	Publication
Complete cDNA Template Probe	show TTGCTTTCGATTGCTTTGCTTTGGTTTGTTATTTTGGGGTTTTGGGTTTTTTTTCGTTTTTTTTTTTTTTGTTTGTTTG TTTGCTTATTTTTTTCTCCCCTAAGTCTTGAAGTTGAGTTTTAGAGGCGACACGGCGGCTTCAGCCGATTTCTTCCCTT TCCTTTGCCTCCCCATGGATATGCACTGCAAGGCAGACCCCTTCTCAGCAATGCACCCAGGGCACGGGGGTGTGAACCA GCTCGGGGGGGTGTTTGTGAACGGCAGGCCCCTACCTGACGTGGTGAGACAAAGGATAGTGGAGCTGGCTCACCAGGGG GTGCGACCCTGTGACATTTCCAGGCAGCTGCGGGTCAGCCACGGCTGTGTCAGCAAGATCCTGGGCAGGTACTACGAGA CGGGGAGCATCAAGCCCGGCGTGATCGGCGGCTCCAAGCCCAAAGTAGCGACCCCCAAAGTAGTGGATAAAATCGCCGA GTACAAGAGACAAAACCCCACCATGTTCGCTTGGGAGATTCGGGACAGGCTACTGGCCGAGGGCATCTGCGACAACGAC ACGGTCCCCAGCGTCTCCTCCATAAACAGGATTATCAGAACCAAAGTTCAGCAACCTTTCCACCCAACACCAGATGGGA GCGGAACCGGTGTGGCTGCACCAGGACATACTATCGTGCCCAGCACAGCATCCCCTCCCGTCTCCAGTGCCTCCAATGA TCCAGTGGGCTCTTACTCCATTAACGGGATCCTGGGGATTCCTCGGTCGAATGGCGAGAAGAGGAAACGTGATGAAGAT GTATCCGAGGGCTCTGTTCCCAACGGAGACTCCCAGAGCAGCGTGGACAGTTTGCGGAAGCACCTTCGTGGCGACACTT TCACCCAGCAGCAGCTGGAAGCTTTAGATCGAGTTTTTGAGCGTCCTTCTTACCCTGACGTCTTTCAAACATCAGAGCA CATCAAATCTGAGCAGGGTAATGAGTACTCCCTCCCAGCTCTGACCCCTGGTCTCGATGAAGTCAAATCAAGTCTATCC ACCTCTGCTAACCCAGACCTGGGGACAAATGTGTCAGGACCCCAGACGTACCCTGTGGTGACCGGTCGTGATATGGCAA GCACCACCTTGCCTGGCTACCCACCCCATGTTCCCCCAACTGGACAAGGCAGCTACCCAACCTCAACTCTGGCAGGAAT GGTTCCTGGGAGCGAATTCTCAGGGAACCCCTACAGCCACCCTCAGTACACAACCTACAATGAGGCCTGGCGGTTCAGC AACCCTGCATTACTAAGTTCCCCTTATTATTATAGTGCCACATCCCGGGGCTCCGCACCTCCCACTGCTGCCGCTGCCT ATGACCGCCACTAGCTACCATGGAAACCACATGAAACTGCAGGGTGACAGCTTAGGCCTCCATATTGTACCTGTCTGAC CCATCCCTCCGCCCCTGGGAAGGTGAAGAGAGCCTTGCCGTGCCTCCCCGCAGCACACCTCCCTCTCCACCGCTCCGAG CGCTCACCATGCCAGACTGAGAACCCCGTTCTCCCTGCATCCCCCTGCACCCTGAGGCACCTCAGGAGCCCTCCACAGC ACCTCGGCACAGCTCGACCTCCTGCACTCCCAAGACTCGAGGGGAACTGGCAGCCATTGCTTGCGGGACCCCATTCTCC TGGGAGCGGTATGGGCAGGGGGAAGTAGGGAGACAGCTGCTCACAAAACACTGATCCCCAAAGATACGCTTCTCTGTGG TGAACTCTTCAGAATGCGTAACCTGTGACCATCGTCCTGTTTCCCAGGACAGAAGGAACAGCCTGGCTAGAGCAGAGAT GGTGGCACTAAGCCCTGCCCATCTGGCAAACAAGAGAAGGACCAAGTGACTTTCTGTTACTCCCCACGCACCTCATCCC ACCCCCCGGCATGGCTCCTGGCGCTGCTGCGCCCTGCGCGGTGCCCTCGAGGCCAGAGCTGGGCTGAACCTCACTCACA CCCACAAC
Citation	Maden M, Blentic A, Reijntjes S, Seguin S, Gale E, Graham A. (2007). Retinoic acid is required for specification of the ventral eye field and for Rathke's pouch in the avian embryo. Int J Dev Biol. 2007;51(3):191-200.
Copyright	"Reprinted from Int. J. Dev. Biol., 51, Maden M, Blentic A, Reijntjes S, Seguin S, Gale E, Graham A, Retinoic acid is required for specification of the ventral eye field and for Rathke's pouch in the avian embryo, 191-200, Copyright (2007), with permission from Copyright © 2007 UBC Press". All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc #NM_204793). Images are quail, but sequence and map shown are chick.

Stage

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13-18

stage 14

stage 18

Eye

Choroid fissure
Quail

31-44

stage 44

Eye

Fig. 2. All images for comparison.
Quail

Entry 6

GEISHA Id	PAX2.Peters.2002	Data Source	Publication
Complete cDNA Template Probe	show TTGCTTTCGATTGCTTTGCTTTGGTTTGTTATTTTGGGGTTTTGGGTTTTTTTTCGTTTTTTTTTTTTTTGTTTGTTTG TTTGCTTATTTTTTTCTCCCCTAAGTCTTGAAGTTGAGTTTTAGAGGCGACACGGCGGCTTCAGCCGATTTCTTCCCTT TCCTTTGCCTCCCCATGGATATGCACTGCAAGGCAGACCCCTTCTCAGCAATGCACCCAGGGCACGGGGGTGTGAACCA GCTCGGGGGGGTGTTTGTGAACGGCAGGCCCCTACCTGACGTGGTGAGACAAAGGATAGTGGAGCTGGCTCACCAGGGG GTGCGACCCTGTGACATTTCCAGGCAGCTGCGGGTCAGCCACGGCTGTGTCAGCAAGATCCTGGGCAGGTACTACGAGA CGGGGAGCATCAAGCCCGGCGTGATCGGCGGCTCCAAGCCCAAAGTAGCGACCCCCAAAGTAGTGGATAAAATCGCCGA GTACAAGAGACAAAACCCCACCATGTTCGCTTGGGAGATTCGGGACAGGCTACTGGCCGAGGGCATCTGCGACAACGAC ACGGTCCCCAGCGTCTCCTCCATAAACAGGATTATCAGAACCAAAGTTCAGCAACCTTTCCACCCAACACCAGATGGGA GCGGAACCGGTGTGGCTGCACCAGGACATACTATCGTGCCCAGCACAGCATCCCCTCCCGTCTCCAGTGCCTCCAATGA TCCAGTGGGCTCTTACTCCATTAACGGGATCCTGGGGATTCCTCGGTCGAATGGCGAGAAGAGGAAACGTGATGAAGAT GTATCCGAGGGCTCTGTTCCCAACGGAGACTCCCAGAGCAGCGTGGACAGTTTGCGGAAGCACCTTCGTGGCGACACTT TCACCCAGCAGCAGCTGGAAGCTTTAGATCGAGTTTTTGAGCGTCCTTCTTACCCTGACGTCTTTCAAACATCAGAGCA CATCAAATCTGAGCAGGGTAATGAGTACTCCCTCCCAGCTCTGACCCCTGGTCTCGATGAAGTCAAATCAAGTCTATCC ACCTCTGCTAACCCAGACCTGGGGACAAATGTGTCAGGACCCCAGACGTACCCTGTGGTGACCGGTCGTGATATGGCAA GCACCACCTTGCCTGGCTACCCACCCCATGTTCCCCCAACTGGACAAGGCAGCTACCCAACCTCAACTCTGGCAGGAAT GGTTCCTGGGAGCGAATTCTCAGGGAACCCCTACAGCCACCCTCAGTACACAACCTACAATGAGGCCTGGCGGTTCAGC AACCCTGCATTACTAAGTTCCCCTTATTATTATAGTGCCACATCCCGGGGCTCCGCACCTCCCACTGCTGCCGCTGCCT ATGACCGCCACTAGCTACCATGGAAACCACATGAAACTGCAGGGTGACAGCTTAGGCCTCCATATTGTACCTGTCTGAC CCATCCCTCCGCCCCTGGGAAGGTGAAGAGAGCCTTGCCGTGCCTCCCCGCAGCACACCTCCCTCTCCACCGCTCCGAG CGCTCACCATGCCAGACTGAGAACCCCGTTCTCCCTGCATCCCCCTGCACCCTGAGGCACCTCAGGAGCCCTCCACAGC ACCTCGGCACAGCTCGACCTCCTGCACTCCCAAGACTCGAGGGGAACTGGCAGCCATTGCTTGCGGGACCCCATTCTCC TGGGAGCGGTATGGGCAGGGGGAAGTAGGGAGACAGCTGCTCACAAAACACTGATCCCCAAAGATACGCTTCTCTGTGG TGAACTCTTCAGAATGCGTAACCTGTGACCATCGTCCTGTTTCCCAGGACAGAAGGAACAGCCTGGCTAGAGCAGAGAT GGTGGCACTAAGCCCTGCCCATCTGGCAAACAAGAGAAGGACCAAGTGACTTTCTGTTACTCCCCACGCACCTCATCCC ACCCCCCGGCATGGCTCCTGGCGCTGCTGCGCCCTGCGCGGTGCCCTCGAGGCCAGAGCTGGGCTGAACCTCACTCACA CCCACAAC
Citation	Peters MA, Cepko CL (2002). The dorsal-ventral axis of the neural retina is divided into multiple domains of restricted gene expression which exhibit features of lineage compartments. Dev Biol. 2002 Nov 1;251(1):59-73.
Copyright	"Reprinted from Developmental Biology, 251(1), Peters MA, Cepko CL, The dorsal-ventral axis of the neural retina is divided into multiple domains of restricted gene expression which exhibit features of lineage compartments, 59-73, Copyright (2002), with permission from Elsevier". Copyright © ( 2002) Elsevier B.V. All rights reserved.
Comments	According to authors , "Probes for Pax2, Bmp4, Tbx5, SOHo, ephrin-B1, ephrin-B2, EphB1-B3, ALDH3/ALDH6, and ALDH1 were prepared as described (refs)." As information provided was insufficient to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_204793).

Stage

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Location (click to highlight)

Comments (click to highlight)

19-24

stage 22

Ear/Otic Placode
Eye
Hindbrain
Midbrain

31-44

stage 44

Entry 7

GEISHA Id	PAX2.James.2005	Data Source	Publication
Forward cDNA Template Probe	show TTGCTTTCGATTGCTTTGCTTTGGTTTGTTATTTTGGGGTTTTGGGTTTTTTTTCGTTTTTTTTTTTTTTGTTTGTTTG TTTGCTTATTTTTTTCTCCCCTAAGTCTTGAAGTTGAGTTTTAGAGGCGACACGGCGGCTTCAGCCGATTTCTTCCCTT TCCTTTGCCTCCCCATGGATATGCACTGCAAGGCAGACCCCTTCTCAGCAATGCACCCAGGGCACGGGGGTGTGAACCA GCTCGGGGGGGTGTTTGTGAACGGCAGGCCCCTACCTGACGTGGTGAGACAAAGGATAGTGGAGCTGGCTCACCAGGGG GTGCGACCCTGTGACATTTCCAGGCAGCTGCGGGTCAGCCACGGCTGTGTCAGCAAGATCCTGGGCAGGTACTACGAGA CGGGGAGCATCAAGCCCGGCGTGATCGGCGGCTCCAAGCCCAAAGTAGCGACCCCCAAAGTAGTGGATAAAATCGCCGA GTACAAGAGACAAAACCCCACCATGTTCGCTTGGGAGATTCGGGACAGGCTACTGGCCGAGGGCATCTGCGACAACGAC ACGGTCCCCAGCGTCTCCTCCATAAACAGGATTATCAGAACCAAAGTTCAGCAACCTTTCCACCCAACACCAGATGGGA GCGGAACCGGTGTGGCTGCACCAGGACATACTATCGTGCCCAGCACAGCATCCCCTCCCGTCTCCAGTGCCTCCAATGA TCCAGTGGGCTCTTACTCCATTAACGGGATCCTGGGGATTCCTCGGTCGAATGGCGAGAAGAGGAAACGTGATGAAGAT GTATCCGAGGGCTCTGTTCCCAACGGAGACTCCCAGAGCAGCGTGGACAGTTTGCGGAAGCACCTTCGTGGCGACACTT TCACCCAGCAGCAGCTGGAAGCTTTAGATCGAGTTTTTGAGCGTCCTTCTTACCCTGACGTCTTTCAAACATCAGAGCA CATCAAATCTGAGCAGGGTAATGAGTACTCCCTCCCAGCTCTGACCCCTGGTCTCGATGAAGTCAAATCAAGTCTATCC ACCTCTGCTAACCCAGACCTGGGGACAAATGTGTCAGGACCCCAGACGTACCCTGTGGTGACCGGTCGTGATATGGCAA GCACCACCTTGCCTGGCTACCCACCCCATGTTCCCCCAACTGGACAAGGCAGCTACCCAACCTCAACTCTGGCAGGAAT GGTTCCTGGGAGCGAATTCTCAGGGAACCCCTACAGCCACCCTCAGTACACAACCTACAATGAGGCCTGGCGGTTCAGC AACCCTGCATTACTAAGTTCCCCTTATTATTATAGTGCCACATCCCGGGGCTCCGCACCTCCCACTGCTGCCGCTGCCT ATGACCGCCACTAGCTACCATGGAAACCACATGAAACTGCAGGGTGACAGCTTAGGCCTCCATATTGTACCTGTCTGAC CCATCCCTCCGCCCCTGGGAAGGTGAAGAGAGCCTTGCCGTGCCTCCCCGCAGCACACCTCCCTCTCCACCGCTCCGAG CGCTCACCATGCCAGACTGAGAACCCCGTTCTCCCTGCATCCCCCTGCACCCTGAGGCACCTCAGGAGCCCTCCACAGC ACCTCGGCACAGCTCGACCTCCTGCACTCCCAAGACTCGAGGGGAACTGGCAGCCATTGCTTGCGGGACCCCATTCTCC TGGGAGCGGTATGGGCAGGGGGAAGTAGGGAGACAGCTGCTCACAAAACACTGATCCCCAAAGATACGCTTCTCTGTGG TGAACTCTTCAGAATGCGTAACCTGTGACCATCGTCCTGTTTCCCAGGACAGAAGGAACAGCCTGGCTAGAGCAGAGAT GGTGGCACTAAGCCCTGCCCATCTGGCAAACAAGAGAAGGACCAAGTGACTTTCTGTTACTCCCCACGCACCTCATCCC ACCCCCCGGCATGGCTCCTGGCGCTGCTGCGCCCTGCGCGGTGCCCTCGAGGCCAGAGCTGGGCTGAACCTCACTCACA CCCACAAC
Citation	James RG, Schultheiss TM. Bmp signaling promotes intermediate mesoderm gene expression in a dose-dependent, cell-autonomous and translation-dependent manner. Dev Biol. 2005 Dec 1;288(1):113-25. Epub 2005 Oct 21.
Copyright	Copyright © 2005 Elsevier Inc. All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204793).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

7-11

stage 11

Paraxial Mesoderm

Entry 8

GEISHA Id	PAX2.Streit.2002	Data Source	Publication
Complete cDNA Template Probe	show TTGCTTTCGATTGCTTTGCTTTGGTTTGTTATTTTGGGGTTTTGGGTTTTTTTTCGTTTTTTTTTTTTTTGTTTGTTTG TTTGCTTATTTTTTTCTCCCCTAAGTCTTGAAGTTGAGTTTTAGAGGCGACACGGCGGCTTCAGCCGATTTCTTCCCTT TCCTTTGCCTCCCCATGGATATGCACTGCAAGGCAGACCCCTTCTCAGCAATGCACCCAGGGCACGGGGGTGTGAACCA GCTCGGGGGGGTGTTTGTGAACGGCAGGCCCCTACCTGACGTGGTGAGACAAAGGATAGTGGAGCTGGCTCACCAGGGG GTGCGACCCTGTGACATTTCCAGGCAGCTGCGGGTCAGCCACGGCTGTGTCAGCAAGATCCTGGGCAGGTACTACGAGA CGGGGAGCATCAAGCCCGGCGTGATCGGCGGCTCCAAGCCCAAAGTAGCGACCCCCAAAGTAGTGGATAAAATCGCCGA GTACAAGAGACAAAACCCCACCATGTTCGCTTGGGAGATTCGGGACAGGCTACTGGCCGAGGGCATCTGCGACAACGAC ACGGTCCCCAGCGTCTCCTCCATAAACAGGATTATCAGAACCAAAGTTCAGCAACCTTTCCACCCAACACCAGATGGGA GCGGAACCGGTGTGGCTGCACCAGGACATACTATCGTGCCCAGCACAGCATCCCCTCCCGTCTCCAGTGCCTCCAATGA TCCAGTGGGCTCTTACTCCATTAACGGGATCCTGGGGATTCCTCGGTCGAATGGCGAGAAGAGGAAACGTGATGAAGAT GTATCCGAGGGCTCTGTTCCCAACGGAGACTCCCAGAGCAGCGTGGACAGTTTGCGGAAGCACCTTCGTGGCGACACTT TCACCCAGCAGCAGCTGGAAGCTTTAGATCGAGTTTTTGAGCGTCCTTCTTACCCTGACGTCTTTCAAACATCAGAGCA CATCAAATCTGAGCAGGGTAATGAGTACTCCCTCCCAGCTCTGACCCCTGGTCTCGATGAAGTCAAATCAAGTCTATCC ACCTCTGCTAACCCAGACCTGGGGACAAATGTGTCAGGACCCCAGACGTACCCTGTGGTGACCGGTCGTGATATGGCAA GCACCACCTTGCCTGGCTACCCACCCCATGTTCCCCCAACTGGACAAGGCAGCTACCCAACCTCAACTCTGGCAGGAAT GGTTCCTGGGAGCGAATTCTCAGGGAACCCCTACAGCCACCCTCAGTACACAACCTACAATGAGGCCTGGCGGTTCAGC AACCCTGCATTACTAAGTTCCCCTTATTATTATAGTGCCACATCCCGGGGCTCCGCACCTCCCACTGCTGCCGCTGCCT ATGACCGCCACTAGCTACCATGGAAACCACATGAAACTGCAGGGTGACAGCTTAGGCCTCCATATTGTACCTGTCTGAC CCATCCCTCCGCCCCTGGGAAGGTGAAGAGAGCCTTGCCGTGCCTCCCCGCAGCACACCTCCCTCTCCACCGCTCCGAG CGCTCACCATGCCAGACTGAGAACCCCGTTCTCCCTGCATCCCCCTGCACCCTGAGGCACCTCAGGAGCCCTCCACAGC ACCTCGGCACAGCTCGACCTCCTGCACTCCCAAGACTCGAGGGGAACTGGCAGCCATTGCTTGCGGGACCCCATTCTCC TGGGAGCGGTATGGGCAGGGGGAAGTAGGGAGACAGCTGCTCACAAAACACTGATCCCCAAAGATACGCTTCTCTGTGG TGAACTCTTCAGAATGCGTAACCTGTGACCATCGTCCTGTTTCCCAGGACAGAAGGAACAGCCTGGCTAGAGCAGAGAT GGTGGCACTAAGCCCTGCCCATCTGGCAAACAAGAGAAGGACCAAGTGACTTTCTGTTACTCCCCACGCACCTCATCCC ACCCCCCGGCATGGCTCCTGGCGCTGCTGCGCCCTGCGCGGTGCCCTCGAGGCCAGAGCTGGGCTGAACCTCACTCACA CCCACAAC
Citation	Streit, A. Extensive cell movements accompany formation of the otic placode. 2002 DEVELOPMENTAL BIOLOGY 249(2), 237-54.
Copyright	"Reprinted from Developmental Biology, 249(2), Streit A., Extensive cell movements accompany formation of the otic placode, 237-54, Copyright (2002), with permission from Elsevier". Copyright © (2002) Elsevier B.V. All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204793).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

7-12

stage 8

stage 9

stage 10

Ear/Otic Placcode
Ear/Otic Placode
Ectoderm
Neural Plate/Tube
Somites

31-44

stage 44

Entry 9

GEISHA Id	PAX2.Zhang.2001	Data Source	Publication
Complete cDNA Template Probe	show TTGCTTTCGATTGCTTTGCTTTGGTTTGTTATTTTGGGGTTTTGGGTTTTTTTTCGTTTTTTTTTTTTTTGTTTGTTTG TTTGCTTATTTTTTTCTCCCCTAAGTCTTGAAGTTGAGTTTTAGAGGCGACACGGCGGCTTCAGCCGATTTCTTCCCTT TCCTTTGCCTCCCCATGGATATGCACTGCAAGGCAGACCCCTTCTCAGCAATGCACCCAGGGCACGGGGGTGTGAACCA GCTCGGGGGGGTGTTTGTGAACGGCAGGCCCCTACCTGACGTGGTGAGACAAAGGATAGTGGAGCTGGCTCACCAGGGG GTGCGACCCTGTGACATTTCCAGGCAGCTGCGGGTCAGCCACGGCTGTGTCAGCAAGATCCTGGGCAGGTACTACGAGA CGGGGAGCATCAAGCCCGGCGTGATCGGCGGCTCCAAGCCCAAAGTAGCGACCCCCAAAGTAGTGGATAAAATCGCCGA GTACAAGAGACAAAACCCCACCATGTTCGCTTGGGAGATTCGGGACAGGCTACTGGCCGAGGGCATCTGCGACAACGAC ACGGTCCCCAGCGTCTCCTCCATAAACAGGATTATCAGAACCAAAGTTCAGCAACCTTTCCACCCAACACCAGATGGGA GCGGAACCGGTGTGGCTGCACCAGGACATACTATCGTGCCCAGCACAGCATCCCCTCCCGTCTCCAGTGCCTCCAATGA TCCAGTGGGCTCTTACTCCATTAACGGGATCCTGGGGATTCCTCGGTCGAATGGCGAGAAGAGGAAACGTGATGAAGAT GTATCCGAGGGCTCTGTTCCCAACGGAGACTCCCAGAGCAGCGTGGACAGTTTGCGGAAGCACCTTCGTGGCGACACTT TCACCCAGCAGCAGCTGGAAGCTTTAGATCGAGTTTTTGAGCGTCCTTCTTACCCTGACGTCTTTCAAACATCAGAGCA CATCAAATCTGAGCAGGGTAATGAGTACTCCCTCCCAGCTCTGACCCCTGGTCTCGATGAAGTCAAATCAAGTCTATCC ACCTCTGCTAACCCAGACCTGGGGACAAATGTGTCAGGACCCCAGACGTACCCTGTGGTGACCGGTCGTGATATGGCAA GCACCACCTTGCCTGGCTACCCACCCCATGTTCCCCCAACTGGACAAGGCAGCTACCCAACCTCAACTCTGGCAGGAAT GGTTCCTGGGAGCGAATTCTCAGGGAACCCCTACAGCCACCCTCAGTACACAACCTACAATGAGGCCTGGCGGTTCAGC AACCCTGCATTACTAAGTTCCCCTTATTATTATAGTGCCACATCCCGGGGCTCCGCACCTCCCACTGCTGCCGCTGCCT ATGACCGCCACTAGCTACCATGGAAACCACATGAAACTGCAGGGTGACAGCTTAGGCCTCCATATTGTACCTGTCTGAC CCATCCCTCCGCCCCTGGGAAGGTGAAGAGAGCCTTGCCGTGCCTCCCCGCAGCACACCTCCCTCTCCACCGCTCCGAG CGCTCACCATGCCAGACTGAGAACCCCGTTCTCCCTGCATCCCCCTGCACCCTGAGGCACCTCAGGAGCCCTCCACAGC ACCTCGGCACAGCTCGACCTCCTGCACTCCCAAGACTCGAGGGGAACTGGCAGCCATTGCTTGCGGGACCCCATTCTCC TGGGAGCGGTATGGGCAGGGGGAAGTAGGGAGACAGCTGCTCACAAAACACTGATCCCCAAAGATACGCTTCTCTGTGG TGAACTCTTCAGAATGCGTAACCTGTGACCATCGTCCTGTTTCCCAGGACAGAAGGAACAGCCTGGCTAGAGCAGAGAT GGTGGCACTAAGCCCTGCCCATCTGGCAAACAAGAGAAGGACCAAGTGACTTTCTGTTACTCCCCACGCACCTCATCCC ACCCCCCGGCATGGCTCCTGGCGCTGCTGCGCCCTGCGCGGTGCCCTCGAGGCCAGAGCTGGGCTGAACCTCACTCACA CCCACAAC
Citation	Zhang XM, Yang XJ (2001). Temporal and spatial effects of Sonic hedgehog signaling in chick eye morphogenesis. Dev Biol. 2001 May 15;233(2):271-90.
Copyright	Copyright © 2001 Academic Press. All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204793).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

19-24

stage 22

stage 24

Eye

Optic Fissure
Optic Stalk

Entry 10

GEISHA Id	Pax2.Baker.2000	Data Source	Publication
Complete cDNA Template Probe	show TTGCTTTCGATTGCTTTGCTTTGGTTTGTTATTTTGGGGTTTTGGGTTTTTTTTCGTTTTTTTTTTTTTTGTTTGTTTG TTTGCTTATTTTTTTCTCCCCTAAGTCTTGAAGTTGAGTTTTAGAGGCGACACGGCGGCTTCAGCCGATTTCTTCCCTT TCCTTTGCCTCCCCATGGATATGCACTGCAAGGCAGACCCCTTCTCAGCAATGCACCCAGGGCACGGGGGTGTGAACCA GCTCGGGGGGGTGTTTGTGAACGGCAGGCCCCTACCTGACGTGGTGAGACAAAGGATAGTGGAGCTGGCTCACCAGGGG GTGCGACCCTGTGACATTTCCAGGCAGCTGCGGGTCAGCCACGGCTGTGTCAGCAAGATCCTGGGCAGGTACTACGAGA CGGGGAGCATCAAGCCCGGCGTGATCGGCGGCTCCAAGCCCAAAGTAGCGACCCCCAAAGTAGTGGATAAAATCGCCGA GTACAAGAGACAAAACCCCACCATGTTCGCTTGGGAGATTCGGGACAGGCTACTGGCCGAGGGCATCTGCGACAACGAC ACGGTCCCCAGCGTCTCCTCCATAAACAGGATTATCAGAACCAAAGTTCAGCAACCTTTCCACCCAACACCAGATGGGA GCGGAACCGGTGTGGCTGCACCAGGACATACTATCGTGCCCAGCACAGCATCCCCTCCCGTCTCCAGTGCCTCCAATGA TCCAGTGGGCTCTTACTCCATTAACGGGATCCTGGGGATTCCTCGGTCGAATGGCGAGAAGAGGAAACGTGATGAAGAT GTATCCGAGGGCTCTGTTCCCAACGGAGACTCCCAGAGCAGCGTGGACAGTTTGCGGAAGCACCTTCGTGGCGACACTT TCACCCAGCAGCAGCTGGAAGCTTTAGATCGAGTTTTTGAGCGTCCTTCTTACCCTGACGTCTTTCAAACATCAGAGCA CATCAAATCTGAGCAGGGTAATGAGTACTCCCTCCCAGCTCTGACCCCTGGTCTCGATGAAGTCAAATCAAGTCTATCC ACCTCTGCTAACCCAGACCTGGGGACAAATGTGTCAGGACCCCAGACGTACCCTGTGGTGACCGGTCGTGATATGGCAA GCACCACCTTGCCTGGCTACCCACCCCATGTTCCCCCAACTGGACAAGGCAGCTACCCAACCTCAACTCTGGCAGGAAT GGTTCCTGGGAGCGAATTCTCAGGGAACCCCTACAGCCACCCTCAGTACACAACCTACAATGAGGCCTGGCGGTTCAGC AACCCTGCATTACTAAGTTCCCCTTATTATTATAGTGCCACATCCCGGGGCTCCGCACCTCCCACTGCTGCCGCTGCCT ATGACCGCCACTAGCTACCATGGAAACCACATGAAACTGCAGGGTGACAGCTTAGGCCTCCATATTGTACCTGTCTGAC CCATCCCTCCGCCCCTGGGAAGGTGAAGAGAGCCTTGCCGTGCCTCCCCGCAGCACACCTCCCTCTCCACCGCTCCGAG CGCTCACCATGCCAGACTGAGAACCCCGTTCTCCCTGCATCCCCCTGCACCCTGAGGCACCTCAGGAGCCCTCCACAGC ACCTCGGCACAGCTCGACCTCCTGCACTCCCAAGACTCGAGGGGAACTGGCAGCCATTGCTTGCGGGACCCCATTCTCC TGGGAGCGGTATGGGCAGGGGGAAGTAGGGAGACAGCTGCTCACAAAACACTGATCCCCAAAGATACGCTTCTCTGTGG TGAACTCTTCAGAATGCGTAACCTGTGACCATCGTCCTGTTTCCCAGGACAGAAGGAACAGCCTGGCTAGAGCAGAGAT GGTGGCACTAAGCCCTGCCCATCTGGCAAACAAGAGAAGGACCAAGTGACTTTCTGTTACTCCCCACGCACCTCATCCC ACCCCCCGGCATGGCTCCTGGCGCTGCTGCGCCCTGCGCGGTGCCCTCGAGGCCAGAGCTGGGCTGAACCTCACTCACA CCCACAAC
Citation	Baker CV, Bronner-Fraser M. Establishing neuronal identity in vertebrate neurogenic placodes. Development. 2000 Jul
Comments	As insufficient information is provided in the publication to verify the exact sequence used to synthesize the probe, the sequence below was obtained from NCBI (acc # NM_204793.1).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

13-18

stage 16

Ear/Otic Placcode
Placcode

19-20

stage 20

Cranial Ganglion
Ear/Otic Placcode

Entry 11

GEISHA Id	PAX2.Wilm.2004	Data Source	Publication
Complete cDNA Template Probe	show TTGCTTTCGATTGCTTTGCTTTGGTTTGTTATTTTGGGGTTTTGGGTTTTTTTTCGTTTTTTTTTTTTTTGTTTGTTTG TTTGCTTATTTTTTTCTCCCCTAAGTCTTGAAGTTGAGTTTTAGAGGCGACACGGCGGCTTCAGCCGATTTCTTCCCTT TCCTTTGCCTCCCCATGGATATGCACTGCAAGGCAGACCCCTTCTCAGCAATGCACCCAGGGCACGGGGGTGTGAACCA GCTCGGGGGGGTGTTTGTGAACGGCAGGCCCCTACCTGACGTGGTGAGACAAAGGATAGTGGAGCTGGCTCACCAGGGG GTGCGACCCTGTGACATTTCCAGGCAGCTGCGGGTCAGCCACGGCTGTGTCAGCAAGATCCTGGGCAGGTACTACGAGA CGGGGAGCATCAAGCCCGGCGTGATCGGCGGCTCCAAGCCCAAAGTAGCGACCCCCAAAGTAGTGGATAAAATCGCCGA GTACAAGAGACAAAACCCCACCATGTTCGCTTGGGAGATTCGGGACAGGCTACTGGCCGAGGGCATCTGCGACAACGAC ACGGTCCCCAGCGTCTCCTCCATAAACAGGATTATCAGAACCAAAGTTCAGCAACCTTTCCACCCAACACCAGATGGGA GCGGAACCGGTGTGGCTGCACCAGGACATACTATCGTGCCCAGCACAGCATCCCCTCCCGTCTCCAGTGCCTCCAATGA TCCAGTGGGCTCTTACTCCATTAACGGGATCCTGGGGATTCCTCGGTCGAATGGCGAGAAGAGGAAACGTGATGAAGAT GTATCCGAGGGCTCTGTTCCCAACGGAGACTCCCAGAGCAGCGTGGACAGTTTGCGGAAGCACCTTCGTGGCGACACTT TCACCCAGCAGCAGCTGGAAGCTTTAGATCGAGTTTTTGAGCGTCCTTCTTACCCTGACGTCTTTCAAACATCAGAGCA CATCAAATCTGAGCAGGGTAATGAGTACTCCCTCCCAGCTCTGACCCCTGGTCTCGATGAAGTCAAATCAAGTCTATCC ACCTCTGCTAACCCAGACCTGGGGACAAATGTGTCAGGACCCCAGACGTACCCTGTGGTGACCGGTCGTGATATGGCAA GCACCACCTTGCCTGGCTACCCACCCCATGTTCCCCCAACTGGACAAGGCAGCTACCCAACCTCAACTCTGGCAGGAAT GGTTCCTGGGAGCGAATTCTCAGGGAACCCCTACAGCCACCCTCAGTACACAACCTACAATGAGGCCTGGCGGTTCAGC AACCCTGCATTACTAAGTTCCCCTTATTATTATAGTGCCACATCCCGGGGCTCCGCACCTCCCACTGCTGCCGCTGCCT ATGACCGCCACTAGCTACCATGGAAACCACATGAAACTGCAGGGTGACAGCTTAGGCCTCCATATTGTACCTGTCTGAC CCATCCCTCCGCCCCTGGGAAGGTGAAGAGAGCCTTGCCGTGCCTCCCCGCAGCACACCTCCCTCTCCACCGCTCCGAG CGCTCACCATGCCAGACTGAGAACCCCGTTCTCCCTGCATCCCCCTGCACCCTGAGGCACCTCAGGAGCCCTCCACAGC ACCTCGGCACAGCTCGACCTCCTGCACTCCCAAGACTCGAGGGGAACTGGCAGCCATTGCTTGCGGGACCCCATTCTCC TGGGAGCGGTATGGGCAGGGGGAAGTAGGGAGACAGCTGCTCACAAAACACTGATCCCCAAAGATACGCTTCTCTGTGG TGAACTCTTCAGAATGCGTAACCTGTGACCATCGTCCTGTTTCCCAGGACAGAAGGAACAGCCTGGCTAGAGCAGAGAT GGTGGCACTAAGCCCTGCCCATCTGGCAAACAAGAGAAGGACCAAGTGACTTTCTGTTACTCCCCACGCACCTCATCCC ACCCCCCGGCATGGCTCCTGGCGCTGCTGCGCCCTGCGCGGTGCCCTCGAGGCCAGAGCTGGGCTGAACCTCACTCACA CCCACAAC
Citation	Wilm B, James RG, Schultheiss TM, Hogan BL (2004). The forkhead genes, Foxc1 and Foxc2, regulate paraxial versus intermediate mesoderm cell fate. Dev Biol. 2004 Jul 1;271(1):176-89.
Copyright	Copyright © 2004 Elsevier Inc. All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204793).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

31-36

stage 36

Nephric Ducts
Nephric Tubules

Entry 12

GEISHA Id	Pax-2.Groves.2000	Data Source	Publication
Complete cDNA Template Probe	show TTGCTTTCGATTGCTTTGCTTTGGTTTGTTATTTTGGGGTTTTGGGTTTTTTTTCGTTTTTTTTTTTTTTGTTTGTTTG TTTGCTTATTTTTTTCTCCCCTAAGTCTTGAAGTTGAGTTTTAGAGGCGACACGGCGGCTTCAGCCGATTTCTTCCCTT TCCTTTGCCTCCCCATGGATATGCACTGCAAGGCAGACCCCTTCTCAGCAATGCACCCAGGGCACGGGGGTGTGAACCA GCTCGGGGGGGTGTTTGTGAACGGCAGGCCCCTACCTGACGTGGTGAGACAAAGGATAGTGGAGCTGGCTCACCAGGGG GTGCGACCCTGTGACATTTCCAGGCAGCTGCGGGTCAGCCACGGCTGTGTCAGCAAGATCCTGGGCAGGTACTACGAGA CGGGGAGCATCAAGCCCGGCGTGATCGGCGGCTCCAAGCCCAAAGTAGCGACCCCCAAAGTAGTGGATAAAATCGCCGA GTACAAGAGACAAAACCCCACCATGTTCGCTTGGGAGATTCGGGACAGGCTACTGGCCGAGGGCATCTGCGACAACGAC ACGGTCCCCAGCGTCTCCTCCATAAACAGGATTATCAGAACCAAAGTTCAGCAACCTTTCCACCCAACACCAGATGGGA GCGGAACCGGTGTGGCTGCACCAGGACATACTATCGTGCCCAGCACAGCATCCCCTCCCGTCTCCAGTGCCTCCAATGA TCCAGTGGGCTCTTACTCCATTAACGGGATCCTGGGGATTCCTCGGTCGAATGGCGAGAAGAGGAAACGTGATGAAGAT GTATCCGAGGGCTCTGTTCCCAACGGAGACTCCCAGAGCAGCGTGGACAGTTTGCGGAAGCACCTTCGTGGCGACACTT TCACCCAGCAGCAGCTGGAAGCTTTAGATCGAGTTTTTGAGCGTCCTTCTTACCCTGACGTCTTTCAAACATCAGAGCA CATCAAATCTGAGCAGGGTAATGAGTACTCCCTCCCAGCTCTGACCCCTGGTCTCGATGAAGTCAAATCAAGTCTATCC ACCTCTGCTAACCCAGACCTGGGGACAAATGTGTCAGGACCCCAGACGTACCCTGTGGTGACCGGTCGTGATATGGCAA GCACCACCTTGCCTGGCTACCCACCCCATGTTCCCCCAACTGGACAAGGCAGCTACCCAACCTCAACTCTGGCAGGAAT GGTTCCTGGGAGCGAATTCTCAGGGAACCCCTACAGCCACCCTCAGTACACAACCTACAATGAGGCCTGGCGGTTCAGC AACCCTGCATTACTAAGTTCCCCTTATTATTATAGTGCCACATCCCGGGGCTCCGCACCTCCCACTGCTGCCGCTGCCT ATGACCGCCACTAGCTACCATGGAAACCACATGAAACTGCAGGGTGACAGCTTAGGCCTCCATATTGTACCTGTCTGAC CCATCCCTCCGCCCCTGGGAAGGTGAAGAGAGCCTTGCCGTGCCTCCCCGCAGCACACCTCCCTCTCCACCGCTCCGAG CGCTCACCATGCCAGACTGAGAACCCCGTTCTCCCTGCATCCCCCTGCACCCTGAGGCACCTCAGGAGCCCTCCACAGC ACCTCGGCACAGCTCGACCTCCTGCACTCCCAAGACTCGAGGGGAACTGGCAGCCATTGCTTGCGGGACCCCATTCTCC TGGGAGCGGTATGGGCAGGGGGAAGTAGGGAGACAGCTGCTCACAAAACACTGATCCCCAAAGATACGCTTCTCTGTGG TGAACTCTTCAGAATGCGTAACCTGTGACCATCGTCCTGTTTCCCAGGACAGAAGGAACAGCCTGGCTAGAGCAGAGAT GGTGGCACTAAGCCCTGCCCATCTGGCAAACAAGAGAAGGACCAAGTGACTTTCTGTTACTCCCCACGCACCTCATCCC ACCCCCCGGCATGGCTCCTGGCGCTGCTGCGCCCTGCGCGGTGCCCTCGAGGCCAGAGCTGGGCTGAACCTCACTCACA CCCACAAC
Citation	Groves AK, Bronner-Fraser M. Competence, specification and commitment in otic placode induction. Development. 2000 Aug;127(16):3489-99.
Copyright	This material is protected by copyright. The Company of Biologists' (publishers of Development) hold an Exclusive License obtained from the authors, who retain copyright.
Comments	According to the authors, chick Pax-2 was provided by Domingos Henrique. As information provided is insufficient to verify exact sequence used to synthesize the probe, the sequence below was obtained from NCBI (Acc# NM_204793.1)

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

4-6

stage 5

Ear/Otic Placcode
Midbrain

7-12

stage 7

Ear/Otic Placcode
Midbrain

13-15

stage 13

stage 15

Ear/Otic Placcode
Isthmus/MHB
Midbrain

Entry 13

GEISHA Id	PAX2.Halilagic.2007	Data Source	Publication
Complete cDNA Template Probe	show TTGCTTTCGATTGCTTTGCTTTGGTTTGTTATTTTGGGGTTTTGGGTTTTTTTTCGTTTTTTTTTTTTTTGTTTGTTTG TTTGCTTATTTTTTTCTCCCCTAAGTCTTGAAGTTGAGTTTTAGAGGCGACACGGCGGCTTCAGCCGATTTCTTCCCTT TCCTTTGCCTCCCCATGGATATGCACTGCAAGGCAGACCCCTTCTCAGCAATGCACCCAGGGCACGGGGGTGTGAACCA GCTCGGGGGGGTGTTTGTGAACGGCAGGCCCCTACCTGACGTGGTGAGACAAAGGATAGTGGAGCTGGCTCACCAGGGG GTGCGACCCTGTGACATTTCCAGGCAGCTGCGGGTCAGCCACGGCTGTGTCAGCAAGATCCTGGGCAGGTACTACGAGA CGGGGAGCATCAAGCCCGGCGTGATCGGCGGCTCCAAGCCCAAAGTAGCGACCCCCAAAGTAGTGGATAAAATCGCCGA GTACAAGAGACAAAACCCCACCATGTTCGCTTGGGAGATTCGGGACAGGCTACTGGCCGAGGGCATCTGCGACAACGAC ACGGTCCCCAGCGTCTCCTCCATAAACAGGATTATCAGAACCAAAGTTCAGCAACCTTTCCACCCAACACCAGATGGGA GCGGAACCGGTGTGGCTGCACCAGGACATACTATCGTGCCCAGCACAGCATCCCCTCCCGTCTCCAGTGCCTCCAATGA TCCAGTGGGCTCTTACTCCATTAACGGGATCCTGGGGATTCCTCGGTCGAATGGCGAGAAGAGGAAACGTGATGAAGAT GTATCCGAGGGCTCTGTTCCCAACGGAGACTCCCAGAGCAGCGTGGACAGTTTGCGGAAGCACCTTCGTGGCGACACTT TCACCCAGCAGCAGCTGGAAGCTTTAGATCGAGTTTTTGAGCGTCCTTCTTACCCTGACGTCTTTCAAACATCAGAGCA CATCAAATCTGAGCAGGGTAATGAGTACTCCCTCCCAGCTCTGACCCCTGGTCTCGATGAAGTCAAATCAAGTCTATCC ACCTCTGCTAACCCAGACCTGGGGACAAATGTGTCAGGACCCCAGACGTACCCTGTGGTGACCGGTCGTGATATGGCAA GCACCACCTTGCCTGGCTACCCACCCCATGTTCCCCCAACTGGACAAGGCAGCTACCCAACCTCAACTCTGGCAGGAAT GGTTCCTGGGAGCGAATTCTCAGGGAACCCCTACAGCCACCCTCAGTACACAACCTACAATGAGGCCTGGCGGTTCAGC AACCCTGCATTACTAAGTTCCCCTTATTATTATAGTGCCACATCCCGGGGCTCCGCACCTCCCACTGCTGCCGCTGCCT ATGACCGCCACTAGCTACCATGGAAACCACATGAAACTGCAGGGTGACAGCTTAGGCCTCCATATTGTACCTGTCTGAC CCATCCCTCCGCCCCTGGGAAGGTGAAGAGAGCCTTGCCGTGCCTCCCCGCAGCACACCTCCCTCTCCACCGCTCCGAG CGCTCACCATGCCAGACTGAGAACCCCGTTCTCCCTGCATCCCCCTGCACCCTGAGGCACCTCAGGAGCCCTCCACAGC ACCTCGGCACAGCTCGACCTCCTGCACTCCCAAGACTCGAGGGGAACTGGCAGCCATTGCTTGCGGGACCCCATTCTCC TGGGAGCGGTATGGGCAGGGGGAAGTAGGGAGACAGCTGCTCACAAAACACTGATCCCCAAAGATACGCTTCTCTGTGG TGAACTCTTCAGAATGCGTAACCTGTGACCATCGTCCTGTTTCCCAGGACAGAAGGAACAGCCTGGCTAGAGCAGAGAT GGTGGCACTAAGCCCTGCCCATCTGGCAAACAAGAGAAGGACCAAGTGACTTTCTGTTACTCCCCACGCACCTCATCCC ACCCCCCGGCATGGCTCCTGGCGCTGCTGCGCCCTGCGCGGTGCCCTCGAGGCCAGAGCTGGGCTGAACCTCACTCACA CCCACAAC
Citation	Halilagic A, Ribes V, Ghyselinck NB, Zile MH, Dollé P, Studer M. Retinoids control anterior and dorsal properties in the developing forebrain. Dev Bio 2007 Mar 1;303(1):244-58
Copyright	Reprinted with permission from Elsevier. Copyright © 2007 Elsevier B.V. All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_204793.1). Images are quail, but sequence and map shown are chick.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

stage 19

Eye

Entry 14

GEISHA Id	PAX2.Chambers.2006	Data Source	Publication
Complete cDNA Template Probe	show TTGCTTTCGATTGCTTTGCTTTGGTTTGTTATTTTGGGGTTTTGGGTTTTTTTTCGTTTTTTTTTTTTTTGTTTGTTTG TTTGCTTATTTTTTTCTCCCCTAAGTCTTGAAGTTGAGTTTTAGAGGCGACACGGCGGCTTCAGCCGATTTCTTCCCTT TCCTTTGCCTCCCCATGGATATGCACTGCAAGGCAGACCCCTTCTCAGCAATGCACCCAGGGCACGGGGGTGTGAACCA GCTCGGGGGGGTGTTTGTGAACGGCAGGCCCCTACCTGACGTGGTGAGACAAAGGATAGTGGAGCTGGCTCACCAGGGG GTGCGACCCTGTGACATTTCCAGGCAGCTGCGGGTCAGCCACGGCTGTGTCAGCAAGATCCTGGGCAGGTACTACGAGA CGGGGAGCATCAAGCCCGGCGTGATCGGCGGCTCCAAGCCCAAAGTAGCGACCCCCAAAGTAGTGGATAAAATCGCCGA GTACAAGAGACAAAACCCCACCATGTTCGCTTGGGAGATTCGGGACAGGCTACTGGCCGAGGGCATCTGCGACAACGAC ACGGTCCCCAGCGTCTCCTCCATAAACAGGATTATCAGAACCAAAGTTCAGCAACCTTTCCACCCAACACCAGATGGGA GCGGAACCGGTGTGGCTGCACCAGGACATACTATCGTGCCCAGCACAGCATCCCCTCCCGTCTCCAGTGCCTCCAATGA TCCAGTGGGCTCTTACTCCATTAACGGGATCCTGGGGATTCCTCGGTCGAATGGCGAGAAGAGGAAACGTGATGAAGAT GTATCCGAGGGCTCTGTTCCCAACGGAGACTCCCAGAGCAGCGTGGACAGTTTGCGGAAGCACCTTCGTGGCGACACTT TCACCCAGCAGCAGCTGGAAGCTTTAGATCGAGTTTTTGAGCGTCCTTCTTACCCTGACGTCTTTCAAACATCAGAGCA CATCAAATCTGAGCAGGGTAATGAGTACTCCCTCCCAGCTCTGACCCCTGGTCTCGATGAAGTCAAATCAAGTCTATCC ACCTCTGCTAACCCAGACCTGGGGACAAATGTGTCAGGACCCCAGACGTACCCTGTGGTGACCGGTCGTGATATGGCAA GCACCACCTTGCCTGGCTACCCACCCCATGTTCCCCCAACTGGACAAGGCAGCTACCCAACCTCAACTCTGGCAGGAAT GGTTCCTGGGAGCGAATTCTCAGGGAACCCCTACAGCCACCCTCAGTACACAACCTACAATGAGGCCTGGCGGTTCAGC AACCCTGCATTACTAAGTTCCCCTTATTATTATAGTGCCACATCCCGGGGCTCCGCACCTCCCACTGCTGCCGCTGCCT ATGACCGCCACTAGCTACCATGGAAACCACATGAAACTGCAGGGTGACAGCTTAGGCCTCCATATTGTACCTGTCTGAC CCATCCCTCCGCCCCTGGGAAGGTGAAGAGAGCCTTGCCGTGCCTCCCCGCAGCACACCTCCCTCTCCACCGCTCCGAG CGCTCACCATGCCAGACTGAGAACCCCGTTCTCCCTGCATCCCCCTGCACCCTGAGGCACCTCAGGAGCCCTCCACAGC ACCTCGGCACAGCTCGACCTCCTGCACTCCCAAGACTCGAGGGGAACTGGCAGCCATTGCTTGCGGGACCCCATTCTCC TGGGAGCGGTATGGGCAGGGGGAAGTAGGGAGACAGCTGCTCACAAAACACTGATCCCCAAAGATACGCTTCTCTGTGG TGAACTCTTCAGAATGCGTAACCTGTGACCATCGTCCTGTTTCCCAGGACAGAAGGAACAGCCTGGCTAGAGCAGAGAT GGTGGCACTAAGCCCTGCCCATCTGGCAAACAAGAGAAGGACCAAGTGACTTTCTGTTACTCCCCACGCACCTCATCCC ACCCCCCGGCATGGCTCCTGGCGCTGCTGCGCCCTGCGCGGTGCCCTCGAGGCCAGAGCTGGGCTGAACCTCACTCACA CCCACAAC
Citation	Chambers, D, Mason, I, A high throughput messenger RNA differential display screen identifies discrete domains of gene expression and novel patterning processes along the developing neural tube. BMC Dev Biol. 2006; 6: 9. Published online 2006 February 24.
Copyright	Copyright © 2006 Chambers and Mason; licensee BioMed Central Ltd.This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_204793.1).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

7-12

stage 7

stage 8

stage 11

stage 12

Head Mesenchyme
Intermediate Mesoderm
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
Paraxial Mesoderm
Placode
Somites

HH stage 8-

13-17

stage 17

Ear/Otic Placode
Eye
Mesencephalon

Entry 15

GEISHA Id	PAX2.Abello.2010	Data Source	Publication
Complete cDNA Template Probe	show TTGCTTTCGATTGCTTTGCTTTGGTTTGTTATTTTGGGGTTTTGGGTTTTTTTTCGTTTTTTTTTTTTTTGTTTGTTTG TTTGCTTATTTTTTTCTCCCCTAAGTCTTGAAGTTGAGTTTTAGAGGCGACACGGCGGCTTCAGCCGATTTCTTCCCTT TCCTTTGCCTCCCCATGGATATGCACTGCAAGGCAGACCCCTTCTCAGCAATGCACCCAGGGCACGGGGGTGTGAACCA GCTCGGGGGGGTGTTTGTGAACGGCAGGCCCCTACCTGACGTGGTGAGACAAAGGATAGTGGAGCTGGCTCACCAGGGG GTGCGACCCTGTGACATTTCCAGGCAGCTGCGGGTCAGCCACGGCTGTGTCAGCAAGATCCTGGGCAGGTACTACGAGA CGGGGAGCATCAAGCCCGGCGTGATCGGCGGCTCCAAGCCCAAAGTAGCGACCCCCAAAGTAGTGGATAAAATCGCCGA GTACAAGAGACAAAACCCCACCATGTTCGCTTGGGAGATTCGGGACAGGCTACTGGCCGAGGGCATCTGCGACAACGAC ACGGTCCCCAGCGTCTCCTCCATAAACAGGATTATCAGAACCAAAGTTCAGCAACCTTTCCACCCAACACCAGATGGGA GCGGAACCGGTGTGGCTGCACCAGGACATACTATCGTGCCCAGCACAGCATCCCCTCCCGTCTCCAGTGCCTCCAATGA TCCAGTGGGCTCTTACTCCATTAACGGGATCCTGGGGATTCCTCGGTCGAATGGCGAGAAGAGGAAACGTGATGAAGAT GTATCCGAGGGCTCTGTTCCCAACGGAGACTCCCAGAGCAGCGTGGACAGTTTGCGGAAGCACCTTCGTGGCGACACTT TCACCCAGCAGCAGCTGGAAGCTTTAGATCGAGTTTTTGAGCGTCCTTCTTACCCTGACGTCTTTCAAACATCAGAGCA CATCAAATCTGAGCAGGGTAATGAGTACTCCCTCCCAGCTCTGACCCCTGGTCTCGATGAAGTCAAATCAAGTCTATCC ACCTCTGCTAACCCAGACCTGGGGACAAATGTGTCAGGACCCCAGACGTACCCTGTGGTGACCGGTCGTGATATGGCAA GCACCACCTTGCCTGGCTACCCACCCCATGTTCCCCCAACTGGACAAGGCAGCTACCCAACCTCAACTCTGGCAGGAAT GGTTCCTGGGAGCGAATTCTCAGGGAACCCCTACAGCCACCCTCAGTACACAACCTACAATGAGGCCTGGCGGTTCAGC AACCCTGCATTACTAAGTTCCCCTTATTATTATAGTGCCACATCCCGGGGCTCCGCACCTCCCACTGCTGCCGCTGCCT ATGACCGCCACTAGCTACCATGGAAACCACATGAAACTGCAGGGTGACAGCTTAGGCCTCCATATTGTACCTGTCTGAC CCATCCCTCCGCCCCTGGGAAGGTGAAGAGAGCCTTGCCGTGCCTCCCCGCAGCACACCTCCCTCTCCACCGCTCCGAG CGCTCACCATGCCAGACTGAGAACCCCGTTCTCCCTGCATCCCCCTGCACCCTGAGGCACCTCAGGAGCCCTCCACAGC ACCTCGGCACAGCTCGACCTCCTGCACTCCCAAGACTCGAGGGGAACTGGCAGCCATTGCTTGCGGGACCCCATTCTCC TGGGAGCGGTATGGGCAGGGGGAAGTAGGGAGACAGCTGCTCACAAAACACTGATCCCCAAAGATACGCTTCTCTGTGG TGAACTCTTCAGAATGCGTAACCTGTGACCATCGTCCTGTTTCCCAGGACAGAAGGAACAGCCTGGCTAGAGCAGAGAT GGTGGCACTAAGCCCTGCCCATCTGGCAAACAAGAGAAGGACCAAGTGACTTTCTGTTACTCCCCACGCACCTCATCCC ACCCCCCGGCATGGCTCCTGGCGCTGCTGCGCCCTGCGCGGTGCCCTCGAGGCCAGAGCTGGGCTGAACCTCACTCACA CCCACAAC
Citation	Abelló G, Khatri S, Radosevic M, Scotting PJ, Giráldez F, Alsina B., Independent regulation of Sox3 and Lmx1b by FGF and BMP signaling influences the neurogenic and non-neurogenic domains in the chick otic placode. Dev Biol. 2010 Mar 1;339(1):166-78. Epub 2010 Jan 4.
Copyright	Copyright © 2009 Elsevier Inc. All rights reserved.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_204793.1).

Stage

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1-3

stage 1

7-10

stage 8

stage 9

stage 10

Ear/Otic Placode
Neural Plate/Tube
Rhombomeres

Entry 16

GEISHA Id	PAX2.Golden.1999	Data Source	Publication
Complete cDNA Template Probe	show TTGCTTTCGATTGCTTTGCTTTGGTTTGTTATTTTGGGGTTTTGGGTTTTTTTTCGTTTTTTTTTTTTTTGTTTGTTTG TTTGCTTATTTTTTTCTCCCCTAAGTCTTGAAGTTGAGTTTTAGAGGCGACACGGCGGCTTCAGCCGATTTCTTCCCTT TCCTTTGCCTCCCCATGGATATGCACTGCAAGGCAGACCCCTTCTCAGCAATGCACCCAGGGCACGGGGGTGTGAACCA GCTCGGGGGGGTGTTTGTGAACGGCAGGCCCCTACCTGACGTGGTGAGACAAAGGATAGTGGAGCTGGCTCACCAGGGG GTGCGACCCTGTGACATTTCCAGGCAGCTGCGGGTCAGCCACGGCTGTGTCAGCAAGATCCTGGGCAGGTACTACGAGA CGGGGAGCATCAAGCCCGGCGTGATCGGCGGCTCCAAGCCCAAAGTAGCGACCCCCAAAGTAGTGGATAAAATCGCCGA GTACAAGAGACAAAACCCCACCATGTTCGCTTGGGAGATTCGGGACAGGCTACTGGCCGAGGGCATCTGCGACAACGAC ACGGTCCCCAGCGTCTCCTCCATAAACAGGATTATCAGAACCAAAGTTCAGCAACCTTTCCACCCAACACCAGATGGGA GCGGAACCGGTGTGGCTGCACCAGGACATACTATCGTGCCCAGCACAGCATCCCCTCCCGTCTCCAGTGCCTCCAATGA TCCAGTGGGCTCTTACTCCATTAACGGGATCCTGGGGATTCCTCGGTCGAATGGCGAGAAGAGGAAACGTGATGAAGAT GTATCCGAGGGCTCTGTTCCCAACGGAGACTCCCAGAGCAGCGTGGACAGTTTGCGGAAGCACCTTCGTGGCGACACTT TCACCCAGCAGCAGCTGGAAGCTTTAGATCGAGTTTTTGAGCGTCCTTCTTACCCTGACGTCTTTCAAACATCAGAGCA CATCAAATCTGAGCAGGGTAATGAGTACTCCCTCCCAGCTCTGACCCCTGGTCTCGATGAAGTCAAATCAAGTCTATCC ACCTCTGCTAACCCAGACCTGGGGACAAATGTGTCAGGACCCCAGACGTACCCTGTGGTGACCGGTCGTGATATGGCAA GCACCACCTTGCCTGGCTACCCACCCCATGTTCCCCCAACTGGACAAGGCAGCTACCCAACCTCAACTCTGGCAGGAAT GGTTCCTGGGAGCGAATTCTCAGGGAACCCCTACAGCCACCCTCAGTACACAACCTACAATGAGGCCTGGCGGTTCAGC AACCCTGCATTACTAAGTTCCCCTTATTATTATAGTGCCACATCCCGGGGCTCCGCACCTCCCACTGCTGCCGCTGCCT ATGACCGCCACTAGCTACCATGGAAACCACATGAAACTGCAGGGTGACAGCTTAGGCCTCCATATTGTACCTGTCTGAC CCATCCCTCCGCCCCTGGGAAGGTGAAGAGAGCCTTGCCGTGCCTCCCCGCAGCACACCTCCCTCTCCACCGCTCCGAG CGCTCACCATGCCAGACTGAGAACCCCGTTCTCCCTGCATCCCCCTGCACCCTGAGGCACCTCAGGAGCCCTCCACAGC ACCTCGGCACAGCTCGACCTCCTGCACTCCCAAGACTCGAGGGGAACTGGCAGCCATTGCTTGCGGGACCCCATTCTCC TGGGAGCGGTATGGGCAGGGGGAAGTAGGGAGACAGCTGCTCACAAAACACTGATCCCCAAAGATACGCTTCTCTGTGG TGAACTCTTCAGAATGCGTAACCTGTGACCATCGTCCTGTTTCCCAGGACAGAAGGAACAGCCTGGCTAGAGCAGAGAT GGTGGCACTAAGCCCTGCCCATCTGGCAAACAAGAGAAGGACCAAGTGACTTTCTGTTACTCCCCACGCACCTCATCCC ACCCCCCGGCATGGCTCCTGGCGCTGCTGCGCCCTGCGCGGTGCCCTCGAGGCCAGAGCTGGGCTGAACCTCACTCACA CCCACAAC
Citation	Golden JA, Bracilovic A, McFadden KA, Beesley JS, Rubenstein JL, Grinspan JB. Ectopic bone morphogenetic proteins 5 and 4 in the chicken forebrain lead to cyclopia and holoprosencephaly. Proc Natl Acad Sci U S A. 1999 Mar 2;96(5):2439-44.
Copyright	Copyright © 2012 National Academy of Sciences. All rights reserved.

Stage

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19-23

stage 23

Eye
Mesonephros
Midbrain

Entry 17

GEISHA Id	PAX2.Watanabe.2009	Data Source	Publication
Complete cDNA Template Probe	show TTGCTTTCGATTGCTTTGCTTTGGTTTGTTATTTTGGGGTTTTGGGTTTTTTTTCGTTTTTTTTTTTTTTGTTTGTTTG TTTGCTTATTTTTTTCTCCCCTAAGTCTTGAAGTTGAGTTTTAGAGGCGACACGGCGGCTTCAGCCGATTTCTTCCCTT TCCTTTGCCTCCCCATGGATATGCACTGCAAGGCAGACCCCTTCTCAGCAATGCACCCAGGGCACGGGGGTGTGAACCA GCTCGGGGGGGTGTTTGTGAACGGCAGGCCCCTACCTGACGTGGTGAGACAAAGGATAGTGGAGCTGGCTCACCAGGGG GTGCGACCCTGTGACATTTCCAGGCAGCTGCGGGTCAGCCACGGCTGTGTCAGCAAGATCCTGGGCAGGTACTACGAGA CGGGGAGCATCAAGCCCGGCGTGATCGGCGGCTCCAAGCCCAAAGTAGCGACCCCCAAAGTAGTGGATAAAATCGCCGA GTACAAGAGACAAAACCCCACCATGTTCGCTTGGGAGATTCGGGACAGGCTACTGGCCGAGGGCATCTGCGACAACGAC ACGGTCCCCAGCGTCTCCTCCATAAACAGGATTATCAGAACCAAAGTTCAGCAACCTTTCCACCCAACACCAGATGGGA GCGGAACCGGTGTGGCTGCACCAGGACATACTATCGTGCCCAGCACAGCATCCCCTCCCGTCTCCAGTGCCTCCAATGA TCCAGTGGGCTCTTACTCCATTAACGGGATCCTGGGGATTCCTCGGTCGAATGGCGAGAAGAGGAAACGTGATGAAGAT GTATCCGAGGGCTCTGTTCCCAACGGAGACTCCCAGAGCAGCGTGGACAGTTTGCGGAAGCACCTTCGTGGCGACACTT TCACCCAGCAGCAGCTGGAAGCTTTAGATCGAGTTTTTGAGCGTCCTTCTTACCCTGACGTCTTTCAAACATCAGAGCA CATCAAATCTGAGCAGGGTAATGAGTACTCCCTCCCAGCTCTGACCCCTGGTCTCGATGAAGTCAAATCAAGTCTATCC ACCTCTGCTAACCCAGACCTGGGGACAAATGTGTCAGGACCCCAGACGTACCCTGTGGTGACCGGTCGTGATATGGCAA GCACCACCTTGCCTGGCTACCCACCCCATGTTCCCCCAACTGGACAAGGCAGCTACCCAACCTCAACTCTGGCAGGAAT GGTTCCTGGGAGCGAATTCTCAGGGAACCCCTACAGCCACCCTCAGTACACAACCTACAATGAGGCCTGGCGGTTCAGC AACCCTGCATTACTAAGTTCCCCTTATTATTATAGTGCCACATCCCGGGGCTCCGCACCTCCCACTGCTGCCGCTGCCT ATGACCGCCACTAGCTACCATGGAAACCACATGAAACTGCAGGGTGACAGCTTAGGCCTCCATATTGTACCTGTCTGAC CCATCCCTCCGCCCCTGGGAAGGTGAAGAGAGCCTTGCCGTGCCTCCCCGCAGCACACCTCCCTCTCCACCGCTCCGAG CGCTCACCATGCCAGACTGAGAACCCCGTTCTCCCTGCATCCCCCTGCACCCTGAGGCACCTCAGGAGCCCTCCACAGC ACCTCGGCACAGCTCGACCTCCTGCACTCCCAAGACTCGAGGGGAACTGGCAGCCATTGCTTGCGGGACCCCATTCTCC TGGGAGCGGTATGGGCAGGGGGAAGTAGGGAGACAGCTGCTCACAAAACACTGATCCCCAAAGATACGCTTCTCTGTGG TGAACTCTTCAGAATGCGTAACCTGTGACCATCGTCCTGTTTCCCAGGACAGAAGGAACAGCCTGGCTAGAGCAGAGAT GGTGGCACTAAGCCCTGCCCATCTGGCAAACAAGAGAAGGACCAAGTGACTTTCTGTTACTCCCCACGCACCTCATCCC ACCCCCCGGCATGGCTCCTGGCGCTGCTGCGCCCTGCGCGGTGCCCTCGAGGCCAGAGCTGGGCTGAACCTCACTCACA CCCACAAC
Citation	Watanabe T, Sato Y, Saito D, Tadokoro R, Takahashi Y. EphrinB2 coordinates the formation of a morphological boundary and cell epithelialization during somite segmentation. Proc Natl Acad Sci U S A. 2009 May 5; 106(18): 74677472.
Copyright	Copyright 2009 national Academy of Sciences USA
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_204793.1 ).

Stage

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7-12

stage 12

Intermediate Mesoderm
Somites

Entry 18

GEISHA Id	PAX2.Christophorou.2009	Data Source	Publication
Complete cDNA Template Probe	show TTGCTTTCGATTGCTTTGCTTTGGTTTGTTATTTTGGGGTTTTGGGTTTTTTTTCGTTTTTTTTTTTTTTGTTTGTTTG TTTGCTTATTTTTTTCTCCCCTAAGTCTTGAAGTTGAGTTTTAGAGGCGACACGGCGGCTTCAGCCGATTTCTTCCCTT TCCTTTGCCTCCCCATGGATATGCACTGCAAGGCAGACCCCTTCTCAGCAATGCACCCAGGGCACGGGGGTGTGAACCA GCTCGGGGGGGTGTTTGTGAACGGCAGGCCCCTACCTGACGTGGTGAGACAAAGGATAGTGGAGCTGGCTCACCAGGGG GTGCGACCCTGTGACATTTCCAGGCAGCTGCGGGTCAGCCACGGCTGTGTCAGCAAGATCCTGGGCAGGTACTACGAGA CGGGGAGCATCAAGCCCGGCGTGATCGGCGGCTCCAAGCCCAAAGTAGCGACCCCCAAAGTAGTGGATAAAATCGCCGA GTACAAGAGACAAAACCCCACCATGTTCGCTTGGGAGATTCGGGACAGGCTACTGGCCGAGGGCATCTGCGACAACGAC ACGGTCCCCAGCGTCTCCTCCATAAACAGGATTATCAGAACCAAAGTTCAGCAACCTTTCCACCCAACACCAGATGGGA GCGGAACCGGTGTGGCTGCACCAGGACATACTATCGTGCCCAGCACAGCATCCCCTCCCGTCTCCAGTGCCTCCAATGA TCCAGTGGGCTCTTACTCCATTAACGGGATCCTGGGGATTCCTCGGTCGAATGGCGAGAAGAGGAAACGTGATGAAGAT GTATCCGAGGGCTCTGTTCCCAACGGAGACTCCCAGAGCAGCGTGGACAGTTTGCGGAAGCACCTTCGTGGCGACACTT TCACCCAGCAGCAGCTGGAAGCTTTAGATCGAGTTTTTGAGCGTCCTTCTTACCCTGACGTCTTTCAAACATCAGAGCA CATCAAATCTGAGCAGGGTAATGAGTACTCCCTCCCAGCTCTGACCCCTGGTCTCGATGAAGTCAAATCAAGTCTATCC ACCTCTGCTAACCCAGACCTGGGGACAAATGTGTCAGGACCCCAGACGTACCCTGTGGTGACCGGTCGTGATATGGCAA GCACCACCTTGCCTGGCTACCCACCCCATGTTCCCCCAACTGGACAAGGCAGCTACCCAACCTCAACTCTGGCAGGAAT GGTTCCTGGGAGCGAATTCTCAGGGAACCCCTACAGCCACCCTCAGTACACAACCTACAATGAGGCCTGGCGGTTCAGC AACCCTGCATTACTAAGTTCCCCTTATTATTATAGTGCCACATCCCGGGGCTCCGCACCTCCCACTGCTGCCGCTGCCT ATGACCGCCACTAGCTACCATGGAAACCACATGAAACTGCAGGGTGACAGCTTAGGCCTCCATATTGTACCTGTCTGAC CCATCCCTCCGCCCCTGGGAAGGTGAAGAGAGCCTTGCCGTGCCTCCCCGCAGCACACCTCCCTCTCCACCGCTCCGAG CGCTCACCATGCCAGACTGAGAACCCCGTTCTCCCTGCATCCCCCTGCACCCTGAGGCACCTCAGGAGCCCTCCACAGC ACCTCGGCACAGCTCGACCTCCTGCACTCCCAAGACTCGAGGGGAACTGGCAGCCATTGCTTGCGGGACCCCATTCTCC TGGGAGCGGTATGGGCAGGGGGAAGTAGGGAGACAGCTGCTCACAAAACACTGATCCCCAAAGATACGCTTCTCTGTGG TGAACTCTTCAGAATGCGTAACCTGTGACCATCGTCCTGTTTCCCAGGACAGAAGGAACAGCCTGGCTAGAGCAGAGAT GGTGGCACTAAGCCCTGCCCATCTGGCAAACAAGAGAAGGACCAAGTGACTTTCTGTTACTCCCCACGCACCTCATCCC ACCCCCCGGCATGGCTCCTGGCGCTGCTGCGCCCTGCGCGGTGCCCTCGAGGCCAGAGCTGGGCTGAACCTCACTCACA CCCACAAC
Citation	Christophorou NA, Bailey AP, Hanson S, Streit A. Activation of Six1 target genes is required for sensory placode formation. Dev Biol. 2009 Dec 15;336(2):327-36. doi: 10.1016/j.ydbio.2009.09.025. Epub 2009 Sep 23.
Copyright	Copyright © 2013 Elsevier B.V. All rights reserved.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI NM_204793.1

Stage

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stage 4

Midbrain

Entry 19

GEISHA Id	PAX2.Hirashima.2008	Data Source	Publication
Complete cDNA Template Probe	show TTGCTTTCGATTGCTTTGCTTTGGTTTGTTATTTTGGGGTTTTGGGTTTTTTTTCGTTTTTTTTTTTTTTGTTTGTTTG TTTGCTTATTTTTTTCTCCCCTAAGTCTTGAAGTTGAGTTTTAGAGGCGACACGGCGGCTTCAGCCGATTTCTTCCCTT TCCTTTGCCTCCCCATGGATATGCACTGCAAGGCAGACCCCTTCTCAGCAATGCACCCAGGGCACGGGGGTGTGAACCA GCTCGGGGGGGTGTTTGTGAACGGCAGGCCCCTACCTGACGTGGTGAGACAAAGGATAGTGGAGCTGGCTCACCAGGGG GTGCGACCCTGTGACATTTCCAGGCAGCTGCGGGTCAGCCACGGCTGTGTCAGCAAGATCCTGGGCAGGTACTACGAGA CGGGGAGCATCAAGCCCGGCGTGATCGGCGGCTCCAAGCCCAAAGTAGCGACCCCCAAAGTAGTGGATAAAATCGCCGA GTACAAGAGACAAAACCCCACCATGTTCGCTTGGGAGATTCGGGACAGGCTACTGGCCGAGGGCATCTGCGACAACGAC ACGGTCCCCAGCGTCTCCTCCATAAACAGGATTATCAGAACCAAAGTTCAGCAACCTTTCCACCCAACACCAGATGGGA GCGGAACCGGTGTGGCTGCACCAGGACATACTATCGTGCCCAGCACAGCATCCCCTCCCGTCTCCAGTGCCTCCAATGA TCCAGTGGGCTCTTACTCCATTAACGGGATCCTGGGGATTCCTCGGTCGAATGGCGAGAAGAGGAAACGTGATGAAGAT GTATCCGAGGGCTCTGTTCCCAACGGAGACTCCCAGAGCAGCGTGGACAGTTTGCGGAAGCACCTTCGTGGCGACACTT TCACCCAGCAGCAGCTGGAAGCTTTAGATCGAGTTTTTGAGCGTCCTTCTTACCCTGACGTCTTTCAAACATCAGAGCA CATCAAATCTGAGCAGGGTAATGAGTACTCCCTCCCAGCTCTGACCCCTGGTCTCGATGAAGTCAAATCAAGTCTATCC ACCTCTGCTAACCCAGACCTGGGGACAAATGTGTCAGGACCCCAGACGTACCCTGTGGTGACCGGTCGTGATATGGCAA GCACCACCTTGCCTGGCTACCCACCCCATGTTCCCCCAACTGGACAAGGCAGCTACCCAACCTCAACTCTGGCAGGAAT GGTTCCTGGGAGCGAATTCTCAGGGAACCCCTACAGCCACCCTCAGTACACAACCTACAATGAGGCCTGGCGGTTCAGC AACCCTGCATTACTAAGTTCCCCTTATTATTATAGTGCCACATCCCGGGGCTCCGCACCTCCCACTGCTGCCGCTGCCT ATGACCGCCACTAGCTACCATGGAAACCACATGAAACTGCAGGGTGACAGCTTAGGCCTCCATATTGTACCTGTCTGAC CCATCCCTCCGCCCCTGGGAAGGTGAAGAGAGCCTTGCCGTGCCTCCCCGCAGCACACCTCCCTCTCCACCGCTCCGAG CGCTCACCATGCCAGACTGAGAACCCCGTTCTCCCTGCATCCCCCTGCACCCTGAGGCACCTCAGGAGCCCTCCACAGC ACCTCGGCACAGCTCGACCTCCTGCACTCCCAAGACTCGAGGGGAACTGGCAGCCATTGCTTGCGGGACCCCATTCTCC TGGGAGCGGTATGGGCAGGGGGAAGTAGGGAGACAGCTGCTCACAAAACACTGATCCCCAAAGATACGCTTCTCTGTGG TGAACTCTTCAGAATGCGTAACCTGTGACCATCGTCCTGTTTCCCAGGACAGAAGGAACAGCCTGGCTAGAGCAGAGAT GGTGGCACTAAGCCCTGCCCATCTGGCAAACAAGAGAAGGACCAAGTGACTTTCTGTTACTCCCCACGCACCTCATCCC ACCCCCCGGCATGGCTCCTGGCGCTGCTGCGCCCTGCGCGGTGCCCTCGAGGCCAGAGCTGGGCTGAACCTCACTCACA CCCACAAC
Citation	Hirashima M, Kobayashi T, Uchikawa M, Kondoh H, Araki M. Anteroventrally localized activity in the optic vesicle plays a crucial role in the optic development. Dev Biol. 2008 May 15;317(2):620-31. doi: 10.1016/j.ydbio.2008.03.010. Epub 2008 Mar 20.
Copyright	Copyright © 2008 Elsevier Inc. All rights reserved.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI NM_204793.1

Stage

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7-11

stage 11

Eye
Isthmus/MHB

Entry 20

GEISHA Id	PAX2.BrennerAnantharam.2007	Data Source	Publication
Complete cDNA Template Probe	show TTGCTTTCGATTGCTTTGCTTTGGTTTGTTATTTTGGGGTTTTGGGTTTTTTTTCGTTTTTTTTTTTTTTGTTTGTTTG TTTGCTTATTTTTTTCTCCCCTAAGTCTTGAAGTTGAGTTTTAGAGGCGACACGGCGGCTTCAGCCGATTTCTTCCCTT TCCTTTGCCTCCCCATGGATATGCACTGCAAGGCAGACCCCTTCTCAGCAATGCACCCAGGGCACGGGGGTGTGAACCA GCTCGGGGGGGTGTTTGTGAACGGCAGGCCCCTACCTGACGTGGTGAGACAAAGGATAGTGGAGCTGGCTCACCAGGGG GTGCGACCCTGTGACATTTCCAGGCAGCTGCGGGTCAGCCACGGCTGTGTCAGCAAGATCCTGGGCAGGTACTACGAGA CGGGGAGCATCAAGCCCGGCGTGATCGGCGGCTCCAAGCCCAAAGTAGCGACCCCCAAAGTAGTGGATAAAATCGCCGA GTACAAGAGACAAAACCCCACCATGTTCGCTTGGGAGATTCGGGACAGGCTACTGGCCGAGGGCATCTGCGACAACGAC ACGGTCCCCAGCGTCTCCTCCATAAACAGGATTATCAGAACCAAAGTTCAGCAACCTTTCCACCCAACACCAGATGGGA GCGGAACCGGTGTGGCTGCACCAGGACATACTATCGTGCCCAGCACAGCATCCCCTCCCGTCTCCAGTGCCTCCAATGA TCCAGTGGGCTCTTACTCCATTAACGGGATCCTGGGGATTCCTCGGTCGAATGGCGAGAAGAGGAAACGTGATGAAGAT GTATCCGAGGGCTCTGTTCCCAACGGAGACTCCCAGAGCAGCGTGGACAGTTTGCGGAAGCACCTTCGTGGCGACACTT TCACCCAGCAGCAGCTGGAAGCTTTAGATCGAGTTTTTGAGCGTCCTTCTTACCCTGACGTCTTTCAAACATCAGAGCA CATCAAATCTGAGCAGGGTAATGAGTACTCCCTCCCAGCTCTGACCCCTGGTCTCGATGAAGTCAAATCAAGTCTATCC ACCTCTGCTAACCCAGACCTGGGGACAAATGTGTCAGGACCCCAGACGTACCCTGTGGTGACCGGTCGTGATATGGCAA GCACCACCTTGCCTGGCTACCCACCCCATGTTCCCCCAACTGGACAAGGCAGCTACCCAACCTCAACTCTGGCAGGAAT GGTTCCTGGGAGCGAATTCTCAGGGAACCCCTACAGCCACCCTCAGTACACAACCTACAATGAGGCCTGGCGGTTCAGC AACCCTGCATTACTAAGTTCCCCTTATTATTATAGTGCCACATCCCGGGGCTCCGCACCTCCCACTGCTGCCGCTGCCT ATGACCGCCACTAGCTACCATGGAAACCACATGAAACTGCAGGGTGACAGCTTAGGCCTCCATATTGTACCTGTCTGAC CCATCCCTCCGCCCCTGGGAAGGTGAAGAGAGCCTTGCCGTGCCTCCCCGCAGCACACCTCCCTCTCCACCGCTCCGAG CGCTCACCATGCCAGACTGAGAACCCCGTTCTCCCTGCATCCCCCTGCACCCTGAGGCACCTCAGGAGCCCTCCACAGC ACCTCGGCACAGCTCGACCTCCTGCACTCCCAAGACTCGAGGGGAACTGGCAGCCATTGCTTGCGGGACCCCATTCTCC TGGGAGCGGTATGGGCAGGGGGAAGTAGGGAGACAGCTGCTCACAAAACACTGATCCCCAAAGATACGCTTCTCTGTGG TGAACTCTTCAGAATGCGTAACCTGTGACCATCGTCCTGTTTCCCAGGACAGAAGGAACAGCCTGGCTAGAGCAGAGAT GGTGGCACTAAGCCCTGCCCATCTGGCAAACAAGAGAAGGACCAAGTGACTTTCTGTTACTCCCCACGCACCTCATCCC ACCCCCCGGCATGGCTCCTGGCGCTGCTGCGCCCTGCGCGGTGCCCTCGAGGCCAGAGCTGGGCTGAACCTCACTCACA CCCACAAC
Citation	Brenner-Anantharam A, Cebrian C, Guillaume R, Hurtado R, Sun TT, Herzlinger D. Tailbud-derived mesenchyme promotes urinary tract segmentation via BMP4 signaling. Development. 2007 May;134(10):1967-75. Epub 2007 Apr 18.
Copyright	Copyright held by the authors. Published by the Company of Biologists Ltd.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI NM_204793.1

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

19-21

stage 21

Hindgut
Lateral Plate Mesoderm
Metanephros
Nephric Ducts
Nephric Tubules
Renal
Tail

Entry 21

GEISHA Id	PAX2.GarciaCampmany.2007	Data Source	Publication
Complete cDNA Template Probe	show TTGCTTTCGATTGCTTTGCTTTGGTTTGTTATTTTGGGGTTTTGGGTTTTTTTTCGTTTTTTTTTTTTTTGTTTGTTTG TTTGCTTATTTTTTTCTCCCCTAAGTCTTGAAGTTGAGTTTTAGAGGCGACACGGCGGCTTCAGCCGATTTCTTCCCTT TCCTTTGCCTCCCCATGGATATGCACTGCAAGGCAGACCCCTTCTCAGCAATGCACCCAGGGCACGGGGGTGTGAACCA GCTCGGGGGGGTGTTTGTGAACGGCAGGCCCCTACCTGACGTGGTGAGACAAAGGATAGTGGAGCTGGCTCACCAGGGG GTGCGACCCTGTGACATTTCCAGGCAGCTGCGGGTCAGCCACGGCTGTGTCAGCAAGATCCTGGGCAGGTACTACGAGA CGGGGAGCATCAAGCCCGGCGTGATCGGCGGCTCCAAGCCCAAAGTAGCGACCCCCAAAGTAGTGGATAAAATCGCCGA GTACAAGAGACAAAACCCCACCATGTTCGCTTGGGAGATTCGGGACAGGCTACTGGCCGAGGGCATCTGCGACAACGAC ACGGTCCCCAGCGTCTCCTCCATAAACAGGATTATCAGAACCAAAGTTCAGCAACCTTTCCACCCAACACCAGATGGGA GCGGAACCGGTGTGGCTGCACCAGGACATACTATCGTGCCCAGCACAGCATCCCCTCCCGTCTCCAGTGCCTCCAATGA TCCAGTGGGCTCTTACTCCATTAACGGGATCCTGGGGATTCCTCGGTCGAATGGCGAGAAGAGGAAACGTGATGAAGAT GTATCCGAGGGCTCTGTTCCCAACGGAGACTCCCAGAGCAGCGTGGACAGTTTGCGGAAGCACCTTCGTGGCGACACTT TCACCCAGCAGCAGCTGGAAGCTTTAGATCGAGTTTTTGAGCGTCCTTCTTACCCTGACGTCTTTCAAACATCAGAGCA CATCAAATCTGAGCAGGGTAATGAGTACTCCCTCCCAGCTCTGACCCCTGGTCTCGATGAAGTCAAATCAAGTCTATCC ACCTCTGCTAACCCAGACCTGGGGACAAATGTGTCAGGACCCCAGACGTACCCTGTGGTGACCGGTCGTGATATGGCAA GCACCACCTTGCCTGGCTACCCACCCCATGTTCCCCCAACTGGACAAGGCAGCTACCCAACCTCAACTCTGGCAGGAAT GGTTCCTGGGAGCGAATTCTCAGGGAACCCCTACAGCCACCCTCAGTACACAACCTACAATGAGGCCTGGCGGTTCAGC AACCCTGCATTACTAAGTTCCCCTTATTATTATAGTGCCACATCCCGGGGCTCCGCACCTCCCACTGCTGCCGCTGCCT ATGACCGCCACTAGCTACCATGGAAACCACATGAAACTGCAGGGTGACAGCTTAGGCCTCCATATTGTACCTGTCTGAC CCATCCCTCCGCCCCTGGGAAGGTGAAGAGAGCCTTGCCGTGCCTCCCCGCAGCACACCTCCCTCTCCACCGCTCCGAG CGCTCACCATGCCAGACTGAGAACCCCGTTCTCCCTGCATCCCCCTGCACCCTGAGGCACCTCAGGAGCCCTCCACAGC ACCTCGGCACAGCTCGACCTCCTGCACTCCCAAGACTCGAGGGGAACTGGCAGCCATTGCTTGCGGGACCCCATTCTCC TGGGAGCGGTATGGGCAGGGGGAAGTAGGGAGACAGCTGCTCACAAAACACTGATCCCCAAAGATACGCTTCTCTGTGG TGAACTCTTCAGAATGCGTAACCTGTGACCATCGTCCTGTTTCCCAGGACAGAAGGAACAGCCTGGCTAGAGCAGAGAT GGTGGCACTAAGCCCTGCCCATCTGGCAAACAAGAGAAGGACCAAGTGACTTTCTGTTACTCCCCACGCACCTCATCCC ACCCCCCGGCATGGCTCCTGGCGCTGCTGCGCCCTGCGCGGTGCCCTCGAGGCCAGAGCTGGGCTGAACCTCACTCACA CCCACAAC
Citation	García-Campmany L, Martí E. The TGFbeta intracellular effector Smad3 regulates neuronal differentiation and cell fate specification in the developing spinal cord. Development. 2007 Jan;134(1):65-75. Epub 2006 Nov 30.
Copyright	Copyright by the authors. Published by the Company of Biologists Ltd.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI NM_204793.1

Stage

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Location (click to highlight)

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19-24

stage 20

Spinal Cord

stage 25

Spinal Cord

Entry 22

GEISHA Id	cPAX2.Adamska.2001	Data Source	Publication
Complete cDNA Template Probe	show TTGCTTTCGATTGCTTTGCTTTGGTTTGTTATTTTGGGGTTTTGGGTTTTTTTTCGTTTTTTTTTTTTTTGTTTGTTTG TTTGCTTATTTTTTTCTCCCCTAAGTCTTGAAGTTGAGTTTTAGAGGCGACACGGCGGCTTCAGCCGATTTCTTCCCTT TCCTTTGCCTCCCCATGGATATGCACTGCAAGGCAGACCCCTTCTCAGCAATGCACCCAGGGCACGGGGGTGTGAACCA GCTCGGGGGGGTGTTTGTGAACGGCAGGCCCCTACCTGACGTGGTGAGACAAAGGATAGTGGAGCTGGCTCACCAGGGG GTGCGACCCTGTGACATTTCCAGGCAGCTGCGGGTCAGCCACGGCTGTGTCAGCAAGATCCTGGGCAGGTACTACGAGA CGGGGAGCATCAAGCCCGGCGTGATCGGCGGCTCCAAGCCCAAAGTAGCGACCCCCAAAGTAGTGGATAAAATCGCCGA GTACAAGAGACAAAACCCCACCATGTTCGCTTGGGAGATTCGGGACAGGCTACTGGCCGAGGGCATCTGCGACAACGAC ACGGTCCCCAGCGTCTCCTCCATAAACAGGATTATCAGAACCAAAGTTCAGCAACCTTTCCACCCAACACCAGATGGGA GCGGAACCGGTGTGGCTGCACCAGGACATACTATCGTGCCCAGCACAGCATCCCCTCCCGTCTCCAGTGCCTCCAATGA TCCAGTGGGCTCTTACTCCATTAACGGGATCCTGGGGATTCCTCGGTCGAATGGCGAGAAGAGGAAACGTGATGAAGAT GTATCCGAGGGCTCTGTTCCCAACGGAGACTCCCAGAGCAGCGTGGACAGTTTGCGGAAGCACCTTCGTGGCGACACTT TCACCCAGCAGCAGCTGGAAGCTTTAGATCGAGTTTTTGAGCGTCCTTCTTACCCTGACGTCTTTCAAACATCAGAGCA CATCAAATCTGAGCAGGGTAATGAGTACTCCCTCCCAGCTCTGACCCCTGGTCTCGATGAAGTCAAATCAAGTCTATCC ACCTCTGCTAACCCAGACCTGGGGACAAATGTGTCAGGACCCCAGACGTACCCTGTGGTGACCGGTCGTGATATGGCAA GCACCACCTTGCCTGGCTACCCACCCCATGTTCCCCCAACTGGACAAGGCAGCTACCCAACCTCAACTCTGGCAGGAAT GGTTCCTGGGAGCGAATTCTCAGGGAACCCCTACAGCCACCCTCAGTACACAACCTACAATGAGGCCTGGCGGTTCAGC AACCCTGCATTACTAAGTTCCCCTTATTATTATAGTGCCACATCCCGGGGCTCCGCACCTCCCACTGCTGCCGCTGCCT ATGACCGCCACTAGCTACCATGGAAACCACATGAAACTGCAGGGTGACAGCTTAGGCCTCCATATTGTACCTGTCTGAC CCATCCCTCCGCCCCTGGGAAGGTGAAGAGAGCCTTGCCGTGCCTCCCCGCAGCACACCTCCCTCTCCACCGCTCCGAG CGCTCACCATGCCAGACTGAGAACCCCGTTCTCCCTGCATCCCCCTGCACCCTGAGGCACCTCAGGAGCCCTCCACAGC ACCTCGGCACAGCTCGACCTCCTGCACTCCCAAGACTCGAGGGGAACTGGCAGCCATTGCTTGCGGGACCCCATTCTCC TGGGAGCGGTATGGGCAGGGGGAAGTAGGGAGACAGCTGCTCACAAAACACTGATCCCCAAAGATACGCTTCTCTGTGG TGAACTCTTCAGAATGCGTAACCTGTGACCATCGTCCTGTTTCCCAGGACAGAAGGAACAGCCTGGCTAGAGCAGAGAT GGTGGCACTAAGCCCTGCCCATCTGGCAAACAAGAGAAGGACCAAGTGACTTTCTGTTACTCCCCACGCACCTCATCCC ACCCCCCGGCATGGCTCCTGGCGCTGCTGCGCCCTGCGCGGTGCCCTCGAGGCCAGAGCTGGGCTGAACCTCACTCACA CCCACAAC
Citation	Adamska M, Herbrand H, Adamski M, Krüger M, Braun T, Bober E. FGFs control the patterning of the inner ear but are not able to induce the full ear program. Mech Dev. 2001 Dec;109(2):303-13.
Copyright	Copyright © 2001 Elsevier Science Ireland Ltd.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence was obtained from NCBI (NM_204793).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

7-12

stage 10

Ear/Otic Placode
Pharyngeal Arches and Clefts

31-44

stage 44

Entry 23

GEISHA Id	Pax2.Hidalgo-Sánchez.1999	Data Source	Publication
Complete cDNA Template Probe	show TTGCTTTCGATTGCTTTGCTTTGGTTTGTTATTTTGGGGTTTTGGGTTTTTTTTCGTTTTTTTTTTTTTTGTTTGTTTG TTTGCTTATTTTTTTCTCCCCTAAGTCTTGAAGTTGAGTTTTAGAGGCGACACGGCGGCTTCAGCCGATTTCTTCCCTT TCCTTTGCCTCCCCATGGATATGCACTGCAAGGCAGACCCCTTCTCAGCAATGCACCCAGGGCACGGGGGTGTGAACCA GCTCGGGGGGGTGTTTGTGAACGGCAGGCCCCTACCTGACGTGGTGAGACAAAGGATAGTGGAGCTGGCTCACCAGGGG GTGCGACCCTGTGACATTTCCAGGCAGCTGCGGGTCAGCCACGGCTGTGTCAGCAAGATCCTGGGCAGGTACTACGAGA CGGGGAGCATCAAGCCCGGCGTGATCGGCGGCTCCAAGCCCAAAGTAGCGACCCCCAAAGTAGTGGATAAAATCGCCGA GTACAAGAGACAAAACCCCACCATGTTCGCTTGGGAGATTCGGGACAGGCTACTGGCCGAGGGCATCTGCGACAACGAC ACGGTCCCCAGCGTCTCCTCCATAAACAGGATTATCAGAACCAAAGTTCAGCAACCTTTCCACCCAACACCAGATGGGA GCGGAACCGGTGTGGCTGCACCAGGACATACTATCGTGCCCAGCACAGCATCCCCTCCCGTCTCCAGTGCCTCCAATGA TCCAGTGGGCTCTTACTCCATTAACGGGATCCTGGGGATTCCTCGGTCGAATGGCGAGAAGAGGAAACGTGATGAAGAT GTATCCGAGGGCTCTGTTCCCAACGGAGACTCCCAGAGCAGCGTGGACAGTTTGCGGAAGCACCTTCGTGGCGACACTT TCACCCAGCAGCAGCTGGAAGCTTTAGATCGAGTTTTTGAGCGTCCTTCTTACCCTGACGTCTTTCAAACATCAGAGCA CATCAAATCTGAGCAGGGTAATGAGTACTCCCTCCCAGCTCTGACCCCTGGTCTCGATGAAGTCAAATCAAGTCTATCC ACCTCTGCTAACCCAGACCTGGGGACAAATGTGTCAGGACCCCAGACGTACCCTGTGGTGACCGGTCGTGATATGGCAA GCACCACCTTGCCTGGCTACCCACCCCATGTTCCCCCAACTGGACAAGGCAGCTACCCAACCTCAACTCTGGCAGGAAT GGTTCCTGGGAGCGAATTCTCAGGGAACCCCTACAGCCACCCTCAGTACACAACCTACAATGAGGCCTGGCGGTTCAGC AACCCTGCATTACTAAGTTCCCCTTATTATTATAGTGCCACATCCCGGGGCTCCGCACCTCCCACTGCTGCCGCTGCCT ATGACCGCCACTAGCTACCATGGAAACCACATGAAACTGCAGGGTGACAGCTTAGGCCTCCATATTGTACCTGTCTGAC CCATCCCTCCGCCCCTGGGAAGGTGAAGAGAGCCTTGCCGTGCCTCCCCGCAGCACACCTCCCTCTCCACCGCTCCGAG CGCTCACCATGCCAGACTGAGAACCCCGTTCTCCCTGCATCCCCCTGCACCCTGAGGCACCTCAGGAGCCCTCCACAGC ACCTCGGCACAGCTCGACCTCCTGCACTCCCAAGACTCGAGGGGAACTGGCAGCCATTGCTTGCGGGACCCCATTCTCC TGGGAGCGGTATGGGCAGGGGGAAGTAGGGAGACAGCTGCTCACAAAACACTGATCCCCAAAGATACGCTTCTCTGTGG TGAACTCTTCAGAATGCGTAACCTGTGACCATCGTCCTGTTTCCCAGGACAGAAGGAACAGCCTGGCTAGAGCAGAGAT GGTGGCACTAAGCCCTGCCCATCTGGCAAACAAGAGAAGGACCAAGTGACTTTCTGTTACTCCCCACGCACCTCATCCC ACCCCCCGGCATGGCTCCTGGCGCTGCTGCGCCCTGCGCGGTGCCCTCGAGGCCAGAGCTGGGCTGAACCTCACTCACA CCCACAAC
Citation	Hidalgo-Sánchez M, Millet S, Simeone A, Alvarado-Mallart RM. Comparative analysis of Otx2, Gbx2, Pax2, Fgf8 and Wnt1 gene expressions during the formation of the chick midbrain/hindbrain domain. Mech Dev 1999 Mar;81(1-2):175-8.
Copyright	Copyright © 1999 Elsevier Science Ireland Ltd.
Comments	Authors indicated the probe was synthesized from the full-length chicken PAX2 cDNA. Above sequence is obtained from NCBI Accession number NM_204793.1.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

7-12

stage 10

Isthmus/MHB
Mesencephalon
Rhombomeres

19-20

stage 20

Isthmus/MHB
Mesencephalon
Rhombomeres

all

Entry 24

GEISHA Id	Pax-2.Stark.2000	Data Source	Publication
Complete cDNA Template Probe	show TTGCTTTCGATTGCTTTGCTTTGGTTTGTTATTTTGGGGTTTTGGGTTTTTTTTCGTTTTTTTTTTTTTTGTTTGTTTG TTTGCTTATTTTTTTCTCCCCTAAGTCTTGAAGTTGAGTTTTAGAGGCGACACGGCGGCTTCAGCCGATTTCTTCCCTT TCCTTTGCCTCCCCATGGATATGCACTGCAAGGCAGACCCCTTCTCAGCAATGCACCCAGGGCACGGGGGTGTGAACCA GCTCGGGGGGGTGTTTGTGAACGGCAGGCCCCTACCTGACGTGGTGAGACAAAGGATAGTGGAGCTGGCTCACCAGGGG GTGCGACCCTGTGACATTTCCAGGCAGCTGCGGGTCAGCCACGGCTGTGTCAGCAAGATCCTGGGCAGGTACTACGAGA CGGGGAGCATCAAGCCCGGCGTGATCGGCGGCTCCAAGCCCAAAGTAGCGACCCCCAAAGTAGTGGATAAAATCGCCGA GTACAAGAGACAAAACCCCACCATGTTCGCTTGGGAGATTCGGGACAGGCTACTGGCCGAGGGCATCTGCGACAACGAC ACGGTCCCCAGCGTCTCCTCCATAAACAGGATTATCAGAACCAAAGTTCAGCAACCTTTCCACCCAACACCAGATGGGA GCGGAACCGGTGTGGCTGCACCAGGACATACTATCGTGCCCAGCACAGCATCCCCTCCCGTCTCCAGTGCCTCCAATGA TCCAGTGGGCTCTTACTCCATTAACGGGATCCTGGGGATTCCTCGGTCGAATGGCGAGAAGAGGAAACGTGATGAAGAT GTATCCGAGGGCTCTGTTCCCAACGGAGACTCCCAGAGCAGCGTGGACAGTTTGCGGAAGCACCTTCGTGGCGACACTT TCACCCAGCAGCAGCTGGAAGCTTTAGATCGAGTTTTTGAGCGTCCTTCTTACCCTGACGTCTTTCAAACATCAGAGCA CATCAAATCTGAGCAGGGTAATGAGTACTCCCTCCCAGCTCTGACCCCTGGTCTCGATGAAGTCAAATCAAGTCTATCC ACCTCTGCTAACCCAGACCTGGGGACAAATGTGTCAGGACCCCAGACGTACCCTGTGGTGACCGGTCGTGATATGGCAA GCACCACCTTGCCTGGCTACCCACCCCATGTTCCCCCAACTGGACAAGGCAGCTACCCAACCTCAACTCTGGCAGGAAT GGTTCCTGGGAGCGAATTCTCAGGGAACCCCTACAGCCACCCTCAGTACACAACCTACAATGAGGCCTGGCGGTTCAGC AACCCTGCATTACTAAGTTCCCCTTATTATTATAGTGCCACATCCCGGGGCTCCGCACCTCCCACTGCTGCCGCTGCCT ATGACCGCCACTAGCTACCATGGAAACCACATGAAACTGCAGGGTGACAGCTTAGGCCTCCATATTGTACCTGTCTGAC CCATCCCTCCGCCCCTGGGAAGGTGAAGAGAGCCTTGCCGTGCCTCCCCGCAGCACACCTCCCTCTCCACCGCTCCGAG CGCTCACCATGCCAGACTGAGAACCCCGTTCTCCCTGCATCCCCCTGCACCCTGAGGCACCTCAGGAGCCCTCCACAGC ACCTCGGCACAGCTCGACCTCCTGCACTCCCAAGACTCGAGGGGAACTGGCAGCCATTGCTTGCGGGACCCCATTCTCC TGGGAGCGGTATGGGCAGGGGGAAGTAGGGAGACAGCTGCTCACAAAACACTGATCCCCAAAGATACGCTTCTCTGTGG TGAACTCTTCAGAATGCGTAACCTGTGACCATCGTCCTGTTTCCCAGGACAGAAGGAACAGCCTGGCTAGAGCAGAGAT GGTGGCACTAAGCCCTGCCCATCTGGCAAACAAGAGAAGGACCAAGTGACTTTCTGTTACTCCCCACGCACCTCATCCC ACCCCCCGGCATGGCTCCTGGCGCTGCTGCGCCCTGCGCGGTGCCCTCGAGGCCAGAGCTGGGCTGAACCTCACTCACA CCCACAAC
Citation	Stark MR, Rao MS, Schoenwolf GC, Yang G, Smith D, Mauch TJ. Frizzled-4 expression during chick kidney development. Mech Dev. 2000 Nov;98(1-2):121-5.
Copyright	Copyright © 2000 Elsevier Science Ireland Ltd.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence was obtained from NCBI (NM_204793).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

7-12

stage 9

Nephric Tubules
Neural Plate/Tube

13-18

stage 15

Aorta
Nephric Ducts
Nephric Tubules
Veins

19-24

stage 24

Aorta
Nephric Ducts
Nephric Tubules
Veins

31-44

stage 40

stage 44

Renal

Entry 25

GEISHA Id	PAX2.Fleming.2013	Data Source	Publication
Complete cDNA Template Probe	show TTGCTTTCGATTGCTTTGCTTTGGTTTGTTATTTTGGGGTTTTGGGTTTTTTTTCGTTTTTTTTTTTTTTGTTTGTTTG TTTGCTTATTTTTTTCTCCCCTAAGTCTTGAAGTTGAGTTTTAGAGGCGACACGGCGGCTTCAGCCGATTTCTTCCCTT TCCTTTGCCTCCCCATGGATATGCACTGCAAGGCAGACCCCTTCTCAGCAATGCACCCAGGGCACGGGGGTGTGAACCA GCTCGGGGGGGTGTTTGTGAACGGCAGGCCCCTACCTGACGTGGTGAGACAAAGGATAGTGGAGCTGGCTCACCAGGGG GTGCGACCCTGTGACATTTCCAGGCAGCTGCGGGTCAGCCACGGCTGTGTCAGCAAGATCCTGGGCAGGTACTACGAGA CGGGGAGCATCAAGCCCGGCGTGATCGGCGGCTCCAAGCCCAAAGTAGCGACCCCCAAAGTAGTGGATAAAATCGCCGA GTACAAGAGACAAAACCCCACCATGTTCGCTTGGGAGATTCGGGACAGGCTACTGGCCGAGGGCATCTGCGACAACGAC ACGGTCCCCAGCGTCTCCTCCATAAACAGGATTATCAGAACCAAAGTTCAGCAACCTTTCCACCCAACACCAGATGGGA GCGGAACCGGTGTGGCTGCACCAGGACATACTATCGTGCCCAGCACAGCATCCCCTCCCGTCTCCAGTGCCTCCAATGA TCCAGTGGGCTCTTACTCCATTAACGGGATCCTGGGGATTCCTCGGTCGAATGGCGAGAAGAGGAAACGTGATGAAGAT GTATCCGAGGGCTCTGTTCCCAACGGAGACTCCCAGAGCAGCGTGGACAGTTTGCGGAAGCACCTTCGTGGCGACACTT TCACCCAGCAGCAGCTGGAAGCTTTAGATCGAGTTTTTGAGCGTCCTTCTTACCCTGACGTCTTTCAAACATCAGAGCA CATCAAATCTGAGCAGGGTAATGAGTACTCCCTCCCAGCTCTGACCCCTGGTCTCGATGAAGTCAAATCAAGTCTATCC ACCTCTGCTAACCCAGACCTGGGGACAAATGTGTCAGGACCCCAGACGTACCCTGTGGTGACCGGTCGTGATATGGCAA GCACCACCTTGCCTGGCTACCCACCCCATGTTCCCCCAACTGGACAAGGCAGCTACCCAACCTCAACTCTGGCAGGAAT GGTTCCTGGGAGCGAATTCTCAGGGAACCCCTACAGCCACCCTCAGTACACAACCTACAATGAGGCCTGGCGGTTCAGC AACCCTGCATTACTAAGTTCCCCTTATTATTATAGTGCCACATCCCGGGGCTCCGCACCTCCCACTGCTGCCGCTGCCT ATGACCGCCACTAGCTACCATGGAAACCACATGAAACTGCAGGGTGACAGCTTAGGCCTCCATATTGTACCTGTCTGAC CCATCCCTCCGCCCCTGGGAAGGTGAAGAGAGCCTTGCCGTGCCTCCCCGCAGCACACCTCCCTCTCCACCGCTCCGAG CGCTCACCATGCCAGACTGAGAACCCCGTTCTCCCTGCATCCCCCTGCACCCTGAGGCACCTCAGGAGCCCTCCACAGC ACCTCGGCACAGCTCGACCTCCTGCACTCCCAAGACTCGAGGGGAACTGGCAGCCATTGCTTGCGGGACCCCATTCTCC TGGGAGCGGTATGGGCAGGGGGAAGTAGGGAGACAGCTGCTCACAAAACACTGATCCCCAAAGATACGCTTCTCTGTGG TGAACTCTTCAGAATGCGTAACCTGTGACCATCGTCCTGTTTCCCAGGACAGAAGGAACAGCCTGGCTAGAGCAGAGAT GGTGGCACTAAGCCCTGCCCATCTGGCAAACAAGAGAAGGACCAAGTGACTTTCTGTTACTCCCCACGCACCTCATCCC ACCCCCCGGCATGGCTCCTGGCGCTGCTGCGCCCTGCGCGGTGCCCTCGAGGCCAGAGCTGGGCTGAACCTCACTCACA CCCACAAC
Citation	Fleming BM, Yelin R, James RG, Schultheiss TM. A role for Vg1/Nodal signaling in specification of the intermediate mesoderm. Development. 2013 Apr;140(8):1819-29
Copyright	© 2013. Published by The Company of Biologists Ltd
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence was obtained from NCBI (NM_204793.1).

no images

Entry 26

GEISHA Id	PAX2.Freter.2012	Data Source	Publication
Complete cDNA Template Probe	show TTGCTTTCGATTGCTTTGCTTTGGTTTGTTATTTTGGGGTTTTGGGTTTTTTTTCGTTTTTTTTTTTTTTGTTTGTTTG TTTGCTTATTTTTTTCTCCCCTAAGTCTTGAAGTTGAGTTTTAGAGGCGACACGGCGGCTTCAGCCGATTTCTTCCCTT TCCTTTGCCTCCCCATGGATATGCACTGCAAGGCAGACCCCTTCTCAGCAATGCACCCAGGGCACGGGGGTGTGAACCA GCTCGGGGGGGTGTTTGTGAACGGCAGGCCCCTACCTGACGTGGTGAGACAAAGGATAGTGGAGCTGGCTCACCAGGGG GTGCGACCCTGTGACATTTCCAGGCAGCTGCGGGTCAGCCACGGCTGTGTCAGCAAGATCCTGGGCAGGTACTACGAGA CGGGGAGCATCAAGCCCGGCGTGATCGGCGGCTCCAAGCCCAAAGTAGCGACCCCCAAAGTAGTGGATAAAATCGCCGA GTACAAGAGACAAAACCCCACCATGTTCGCTTGGGAGATTCGGGACAGGCTACTGGCCGAGGGCATCTGCGACAACGAC ACGGTCCCCAGCGTCTCCTCCATAAACAGGATTATCAGAACCAAAGTTCAGCAACCTTTCCACCCAACACCAGATGGGA GCGGAACCGGTGTGGCTGCACCAGGACATACTATCGTGCCCAGCACAGCATCCCCTCCCGTCTCCAGTGCCTCCAATGA TCCAGTGGGCTCTTACTCCATTAACGGGATCCTGGGGATTCCTCGGTCGAATGGCGAGAAGAGGAAACGTGATGAAGAT GTATCCGAGGGCTCTGTTCCCAACGGAGACTCCCAGAGCAGCGTGGACAGTTTGCGGAAGCACCTTCGTGGCGACACTT TCACCCAGCAGCAGCTGGAAGCTTTAGATCGAGTTTTTGAGCGTCCTTCTTACCCTGACGTCTTTCAAACATCAGAGCA CATCAAATCTGAGCAGGGTAATGAGTACTCCCTCCCAGCTCTGACCCCTGGTCTCGATGAAGTCAAATCAAGTCTATCC ACCTCTGCTAACCCAGACCTGGGGACAAATGTGTCAGGACCCCAGACGTACCCTGTGGTGACCGGTCGTGATATGGCAA GCACCACCTTGCCTGGCTACCCACCCCATGTTCCCCCAACTGGACAAGGCAGCTACCCAACCTCAACTCTGGCAGGAAT GGTTCCTGGGAGCGAATTCTCAGGGAACCCCTACAGCCACCCTCAGTACACAACCTACAATGAGGCCTGGCGGTTCAGC AACCCTGCATTACTAAGTTCCCCTTATTATTATAGTGCCACATCCCGGGGCTCCGCACCTCCCACTGCTGCCGCTGCCT ATGACCGCCACTAGCTACCATGGAAACCACATGAAACTGCAGGGTGACAGCTTAGGCCTCCATATTGTACCTGTCTGAC CCATCCCTCCGCCCCTGGGAAGGTGAAGAGAGCCTTGCCGTGCCTCCCCGCAGCACACCTCCCTCTCCACCGCTCCGAG CGCTCACCATGCCAGACTGAGAACCCCGTTCTCCCTGCATCCCCCTGCACCCTGAGGCACCTCAGGAGCCCTCCACAGC ACCTCGGCACAGCTCGACCTCCTGCACTCCCAAGACTCGAGGGGAACTGGCAGCCATTGCTTGCGGGACCCCATTCTCC TGGGAGCGGTATGGGCAGGGGGAAGTAGGGAGACAGCTGCTCACAAAACACTGATCCCCAAAGATACGCTTCTCTGTGG TGAACTCTTCAGAATGCGTAACCTGTGACCATCGTCCTGTTTCCCAGGACAGAAGGAACAGCCTGGCTAGAGCAGAGAT GGTGGCACTAAGCCCTGCCCATCTGGCAAACAAGAGAAGGACCAAGTGACTTTCTGTTACTCCCCACGCACCTCATCCC ACCCCCCGGCATGGCTCCTGGCGCTGCTGCGCCCTGCGCGGTGCCCTCGAGGCCAGAGCTGGGCTGAACCTCACTCACA CCCACAAC
Citation	Freter S, Muta Y, O'Neill P, Vassilev VS, Kuraku S, Ladher RK. Pax2 modulates proliferation during specification of the otic and epibranchial placodes. Dev Dyn. 2012 Nov;241(11):1716-28
Copyright	Copyright © 2012 Wiley Periodicals, Inc.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence was obtained from NCBI (NM_204793.1).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

7-11

stage 11

Ectoderm

control = left side of embryo

all

Data from NCBI Unigene EST Profile
Unigene ID: Gga.313

Mouse

Emage	MGI:97486
Eurexpress	MGI:97486
MGI GXD	MGI:97486

Frog

Xenbase

486800

Fruit Fly

BDGP	FBgn0005561

Zebra Finch

ZEBrA

Zebrafish

ZFIN	ZDB-GENE-001030-4, ZDB-GENE-990415-8

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PAX2paired box 2

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Entry 26

Mouse

Frog

Fruit Fly

Zebra Finch

Zebrafish

PAX2
paired box 2