GEISHA - A Chicken Embryo Gene Expression Database
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LEFTY2
left-right determination factor 2

Gene
Official SymbolLEFTY2
Official Full Nameleft-right determination factor 2
CGNC ID49363
also known asLEFTY1, left-right determination factor 1|lefty
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_204764
PolypeptideNP_990095
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.4956
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human
Mouse
Xenopus
Zebrafish30146, 30145ENSDARG00000044059, ENSDARG00000019920ZDB-GENE-990630-11, ZDB-GENE-990630-10ZFIN:ZDB-GENE-990630-11, ZFIN:ZDB-GENE-990630-10
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene395529
Ensembl Gene
KEGGgga:395529

Entry 1

GEISHA IdLEFTY2.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template PrimerTGGAGGGGAGGATACCAAAAAAC
Reverse cDNA Template PrimerATTAACCCTCACTAAAGGTGGGGTGGGGACTGAAATAACCcDNA Template Length866
Forward cDNA Template Probeshow
TAATACTCATGGACCCCTCAAATGCAGGAGGTGCACCTCCTCTGCGACCAGCAGCACCGGTTACTCCCCTAACTCAGTC
CCTTTAAAAAGTGCTGCGCCATCTGCCATGCAGCTGCACTTCTCAATGATCATGTTGGGAAACTCAGTTGCTTCGGTCT
CAATGTGGTTGCCCCTCCGGACCAAGTACGTGATGGGGAGTGGGGAGCTCTCGGCCACAGCGCACGCACGCTCCCTGCC
CCCGCACATCTGTATTGGGCCAGGAAGCTGCAGGCCGGCCCCCCGTGATCTGTAAGTTGGGTATGCTGCCCGCTTCATC
ACCCAGTACTGTGTACACGAAACCTCAGGGAAGTTGAAGTAGTGGCTCTGCCGGCATGACGTGGACTTCCCTGGCTGCC
CTGCATCCTTGCAGGCCCCAGGGCCCCCATAGTCCTCCAACTGCAGGGTGTATAACACCAACTTGAGTCTTCCTAAGGC
TCTGTCTACACCATACTGGGACGTGAAGCCCACCGGCTTGGCAACCCTAACTTGCCAGGGGCGCTGCCTTTCCCCTTCT
ATCCACAATATACTGACCATTGGCAACGGACTTGTCTTTCCCATCATTAATAGCCACCCCTTTCTCACCTTATAATTGG
TCCAGGACGGACTATCATATGGGAAACCTACCGCGAATTGAGTTTCCCCAAGGTCCTGTTTGTTACGTGCCAGCTGGAC
TATTAACCCACGTCAAAACTTTATCTTAGGGAATTGGAATATAAGGGCAAATTCGGGTACCACTGGAGACCAGGAAACA
CCTCCAAACTACCGTGCTTTTTGGAGAAACCTTTCCTTCTGGCTCATTTACCACTCCCCCGGCATATTAATTAATAGAC
GCGCTTTAAAAAAAAATACCTTATGTTCCCACCCCAACGATCGACGCCCTGCTCGATGCAGTATCTGATTACATAAACA
CTAAAAGATCACCCTTACTCTTAAGATCCTACTAATTCTGCCCCCAACACCATCACCATCATTACCCCAAAGCCTATCT
CCTCCTCGAATTACAATCCTAAATAATATAAAACACTCATTTATCTCCACTCTTTCACACAACCTTCCTCTGTTTACTG
CTATAACTCTATCCATATATCTTACAAATCCTAACATCATGACTTGTATATTACATATAATAGCATACTTTTTACATAA
TAGATTTATACACACCTCATCATTAATCTATTTTTATATTAAGGTGTACTCTATACATGCAATTTGCATTACCTACACA
CTCACTACTTCTCTATAGTCGAGTCTATAAGCATCCTTTATTCCAACAACTTCAATTACTCTACGCAGATGCCTCAGCG
TTTATATATGCATTTTACACACAGCCTCGTACTCCTGTCGCAGTACTAAATAGACACCTATTACACACTTATAGTACCA
CCAACATGCAATAGTCACTCATCTTGCCTAGATCAGACACAGCTTAGTACTTGCTATGCCTCGTCTCCTCTCACCAATC
TGATATTACTATACCCATCCATACATCCCACTCTTGTCTGTATACGTAACTTTTATAATGATCTACGGCATACTCTCTT
ACGCTGACGCTACTGCATTCTCATACGAATGACCATCCTACAGCACTAACCCTCCTACCATGCTCAA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 20
stage 23
Notochord
 
25-26
stage 26
Notochord
 

Entry 2

GEISHA IdLEFTY2.Hardy.2011Data SourceGEISHA ISH Analysis
Complete cDNA Template Probeshow
CACCACAGCCCTGCTGACATCCCTGTTCCTCCCTGCGAGCCACCAACAGGCAGGATGGAGGTGAGCTTCACCCGGATGC
TCTACGTGCTCTGTCTGGTTGCCATGGCCTGTGCGTTCACCCAGGAAGGGTTCAAAGAAGTGATGCTGAAGCAGCTGGG
GCTCTCTGAAGTCCCTAAGCTTCATAAGAGAGATCTGGTGGACCTGGTCATCCCCGAGCATGTGAAGAACAAGTACATC
TCCATGCTGAAGCGGCACAGGGGGAAGCGTCGTGCCTCTCCCAGCTTGGCCAGCATCCTGCAGGGGATCCCCGGCAATG
CAGAAGTCTTCTACTCTGACCCCATGCGCCAGAACTTCATCTTTGACATGGAGGGGAGGATACCAAAAAACAGTGAAGT
GACAATGGCTGAACTGAAGCTTTTCAAGAAGCCCCTGGACAGGGTGAACCTGCCAGCCAGGCAGCCCCATCGGCCCGTC
TCCAATGCCAGGGTCAGCATCTACTGGGTGCAGAGACAGCACGACGGCACAAACAGGACCTCGCTGATCGACTCCCGGC
TGGTTCCCATAAGAGAGTCAGGCTGGAAGAACTTTGACGTGACACAGGCTGTGCACTACTGGCTGCGGAACAAGAGGCA
GGAGCCAATGGTCCTGCAGGTCTGGATCGAAGGGGAAAGGGTGGCGAGCTATGCTGCAGAGGTTGCCAAGTCCGTGCGC
TTCACCTCACAGGATGCTGGAGACAGAGCCGTGGGAAGACCCGAGCTGGTGCTCTACACCCTTGACTTGGAGGACTACG
GGGGCCCTGGGGACTGCAAGGATGGAGTGCAGGCAGGGAAGTCCACCTGCTGCCGGCAGAAGCACTACATCAACTTCCG
TGAGCTCTCCTGGACACAGTACTGGGTCATCGAGCCGGCAGGATACCAGGCTTACAGCTGCCGGGGGGGCTGCCTGCAG
CTTCCTGGCCCACTACAGCTCTGGGGGGGCAGGGAGCGTGCCTGTGCTGTGGCCGAGAGCTCCCCGCTCCCCATCATGT
ACCTGGTCCGGAGGGGCAACCACACTGAGATTGAAGCAACTGAGTTTCCCAACATGATCATTGAGAAGTGCAGCTGCAT
GGCAGATGGCGCAGACTTCTGTGAGGGGCTGACTTAGGGGAGTAACGGTGCTGCTGGGCCTGGAGGAGGTGCACCTCCC
TGCATTTGGTGTGGCTGCCTCTGGGTTATTTCAGTCCCCACCCCAGGGCACTGCAAGCAGCTGCAGGTGAAAGGCAAGG
ACAGTGATTACGGCCAGGTGCAAAAGTCGAGCTTGGGTTTGGATTTTAGTTCCTTGGTTCCCTGTGCTTTGTACGTTTT
GGTCCTTGGCCCCAAGCTGTGTTTGCTGTGGACAGCAGAGCAAAAGCACTTACATGTATATGTTGTACATGCACACATA
TGCACATGTATCACAAATGCATGTACATATATATGTATTGTATACGTGCATATTGTATATATACGCATTTTCTACATAC
ATACATATATGTACATAGAATATTGCCTAGAGCTTAAATGAATGTATATATGTAAGTATGCATTGTATGCATATATCTG
TAGATATACATGTACATACAACATTGTCCAGAACTCAAAGGACAGTATTGTTGACCCCTGCACCAAGAATTTGGCACAG
TTTTAAGCAGAATTTGGAGTCCTGAAGCCAGTGGACATATTGGGATTTTGGTTTGCTTGCACAAATGATTGTTTATAGA
ATCAGGTCCTCATTTTTCTGATTGCATATTACAGTTTTTTCAGTTAGAGCTATTTTTTGTAGTCTTAATAGCTTTCAAA
ATTAAGTAGCATAAATATGATTATTAAAATAGCCAAAGAAAAAGAAAAAAAAAAAAAAAAANGTACTAGTCGAACGGGT
GGNCAAGCG
CommentsImages provided by Katharine M. Hardy and Mary J.C. Hendrix, and funded by NIH award R01CA121205. Insufficient information provided in publication to verify exact sequence used to synthesize probe. The sequence below was obtained from NCBI (acc # NM_204764.1)
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 5
stage 6
Notochord
 
7-12
stage 7
stage 8
stage 9
stage 10
stage 11
stage 12
Lateral Plate Mesoderm
Notochord
 
13-18
stage 18
Notochord
 
19
stage 19
Notochord
 

Entry 3

GEISHA IdLEFTY1.WangS.2004Data SourcePublication
Complete cDNA Template Probeshow
CACCACAGCCCTGCTGACATCCCTGTTCCTCCCTGCGAGCCACCAACAGGCAGGATGGAGGTGAGCTTCACCCGGATGC
TCTACGTGCTCTGTCTGGTTGCCATGGCCTGTGCGTTCACCCAGGAAGGGTTCAAAGAAGTGATGCTGAAGCAGCTGGG
GCTCTCTGAAGTCCCTAAGCTTCATAAGAGAGATCTGGTGGACCTGGTCATCCCCGAGCATGTGAAGAACAAGTACATC
TCCATGCTGAAGCGGCACAGGGGGAAGCGTCGTGCCTCTCCCAGCTTGGCCAGCATCCTGCAGGGGATCCCCGGCAATG
CAGAAGTCTTCTACTCTGACCCCATGCGCCAGAACTTCATCTTTGACATGGAGGGGAGGATACCAAAAAACAGTGAAGT
GACAATGGCTGAACTGAAGCTTTTCAAGAAGCCCCTGGACAGGGTGAACCTGCCAGCCAGGCAGCCCCATCGGCCCGTC
TCCAATGCCAGGGTCAGCATCTACTGGGTGCAGAGACAGCACGACGGCACAAACAGGACCTCGCTGATCGACTCCCGGC
TGGTTCCCATAAGAGAGTCAGGCTGGAAGAACTTTGACGTGACACAGGCTGTGCACTACTGGCTGCGGAACAAGAGGCA
GGAGCCAATGGTCCTGCAGGTCTGGATCGAAGGGGAAAGGGTGGCGAGCTATGCTGCAGAGGTTGCCAAGTCCGTGCGC
TTCACCTCACAGGATGCTGGAGACAGAGCCGTGGGAAGACCCGAGCTGGTGCTCTACACCCTTGACTTGGAGGACTACG
GGGGCCCTGGGGACTGCAAGGATGGAGTGCAGGCAGGGAAGTCCACCTGCTGCCGGCAGAAGCACTACATCAACTTCCG
TGAGCTCTCCTGGACACAGTACTGGGTCATCGAGCCGGCAGGATACCAGGCTTACAGCTGCCGGGGGGGCTGCCTGCAG
CTTCCTGGCCCACTACAGCTCTGGGGGGGCAGGGAGCGTGCCTGTGCTGTGGCCGAGAGCTCCCCGCTCCCCATCATGT
ACCTGGTCCGGAGGGGCAACCACACTGAGATTGAAGCAACTGAGTTTCCCAACATGATCATTGAGAAGTGCAGCTGCAT
GGCAGATGGCGCAGACTTCTGTGAGGGGCTGACTTAGGGGAGTAACGGTGCTGCTGGGCCTGGAGGAGGTGCACCTCCC
TGCATTTGGTGTGGCTGCCTCTGGGTTATTTCAGTCCCCACCCCAGGGCACTGCAAGCAGCTGCAGGTGAAAGGCAAGG
ACAGTGATTACGGCCAGGTGCAAAAGTCGAGCTTGGGTTTGGATTTTAGTTCCTTGGTTCCCTGTGCTTTGTACGTTTT
GGTCCTTGGCCCCAAGCTGTGTTTGCTGTGGACAGCAGAGCAAAAGCACTTACATGTATATGTTGTACATGCACACATA
TGCACATGTATCACAAATGCATGTACATATATATGTATTGTATACGTGCATATTGTATATATACGCATTTTCTACATAC
ATACATATATGTACATAGAATATTGCCTAGAGCTTAAATGAATGTATATATGTAAGTATGCATTGTATGCATATATCTG
TAGATATACATGTACATACAACATTGTCCAGAACTCAAAGGACAGTATTGTTGACCCCTGCACCAAGAATTTGGCACAG
TTTTAAGCAGAATTTGGAGTCCTGAAGCCAGTGGACATATTGGGATTTTGGTTTGCTTGCACAAATGATTGTTTATAGA
ATCAGGTCCTCATTTTTCTGATTGCATATTACAGTTTTTTCAGTTAGAGCTATTTTTTGTAGTCTTAATAGCTTTCAAA
ATTAAGTAGCATAAATATGATTATTAAAATAGCCAAAGAAAAAGAAAAAAAAAAAAAAAAANGTACTAGTCGAACGGGT
GGNCAAGCG
CitationWang S, Yu X, Zhang T, Zhang X, Zhang Z, Chen Y. Chick Pcl2 regulates the left-right asymmetry by repressing Shh expression in Hensen's node. Development. 2004 Sep;131(17):4381-91. Epub 2004 Aug 4.
Copyrightcopyright 2004 to the authors. Published by the Company of Biologists Ltd.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4
stage 4
stage 4
Neural Plate/Tube
floor plate

Entry 4

GEISHA IdLEFTY1.Katsu.2012Data SourcePublication
Complete cDNA Template Probeshow
CATAAGAGAGATCTGGTGGACCTGGTCATCCCCGAGCATGTGAAGAACAAGTACATCTCCATGCTGAAGCGGCACAGGG
GGAAGCGTCGTGCCTCTCCCAGCTTGGCCAGCATCCTGCAGGGGATCCCCGGCAATGCAGAAGTCTTCTACTCTGACCC
CATGCGCCAGAACTTCATCTTTGACATGGAGGGGAGGATACCAAAAAACAGTGAAGTGACAATGGCTGAACTGAAGCTT
TTCAAGAAGCCCCTGGACAGGGTGAACCTGCCAGCCAGGCAGCCCCATCGGCCCGTCTCCAATGCCAGGGTCAGCATCT
ACTGGGTGCAGAGACAGCACGACGGCACAAACAGGACCTCGCTGATCGACTCCCGGCTGGTTCCCATAAGAGAGTCAGG
CTGGAAGAACTTTGACGTGACACAGGCTGTGCACTACTGGCTGCGGAACAAGAGGCAGGAGCCAATGGTCCTGCAGGTC
TGGATCGAAGGGGAAAGGGTGGCGAGCTATGCTGCAGAGGTTGCCAAGTCCGTGCGCTTCACCTCACAGGATGCTGGAG
ACAGAGCCGTGGGAAGACCCGAGCTGGTGCTCTACACCCTTGACTTGGAGGACTACGGGGGCCCTGGGGACTGCAAGGA
TGGAGTGCAGGCAGGGAAGTCCACCTGCTGCCGGCAGAAGCACTACATCAACTTCCGTGAGCTCTCCTGGACACAGTAC
TGGGTCATCGAGCCGGCAGGATACCAGGCTTACAGCTGCCGGGGGGGCTGCCTGCAGCTTCCTGGCCCACTACAGCTCT
GGGGGGGCAGGGAGCGTGCCTGTGCTGTGGCCGAGAGCTCCCCGCTCCCCATCATGTACCTGGTCCGGAGGGGCAACCA
CACTGAGATTGAAGCAACTGAGTTTCCCAACATGATCATTGAGAAGTGCAGCTGCATGGCAGATGGCGCAGACTTCTGT
GAGGGGCTGACTTAGGGGAGTAACGGTGCTGCTGGGCCTGGAGGAGGTGCACCTCCCTGCATTTGGTGTGGCTGCCTCT
GGGTTATTTCAGTCCCCACCCCAGGGCACTGCAAGCAGCTGCAGGTGAAAGGCAAGGACAGTGATTACGGCCAGGTGCA
AAAGTCGAGCTTGGGTTTGGATTTTAGTTCCTTGGTTCCCTGTGCTTTGTACGTTTTGGTCCTTGGCCCCAAGCTGTGT
TTGCTGTGGACAGCAGAGCAAAAGCACTTACATGTATATGTTGTACATGCACACATATGCACATGTATCACAAATGCAT
GTACATATATATGTATTGTATACGTGCATATTGTATATATACGCATTTTCTACATACATACATATATGTACATAGAATA
TTGCCTAGAGCTTAAATGAATGTATATATGTAAGTATGCATTGTATGCATATATCTGTAGATATACATGTACATACAAC
ATTGTCCAGAACTCAAAGGACAGTATTGTTGACCCCTGCACCAAGAATTTGGCACAGTTTTAAGCAG
CitationKatsu K, Tokumori D, Tatsumi N, Suzuki A, Yokouchi Y. BMP inhibition by DAN in Hensen's node is a critical step for the establishment of left-right asymmetry in the chick embryo. Dev Biol. 2012 Mar 1;363(1):15-26.
CopyrightCopyright © 2012. Published by Elsevier Inc.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (Acc. # AF179483.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7
stage 7
stage 7
Hensen's Node
control embryo
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.4956

Mouse

Emage
Eurexpress
MGI GXD

Frog

Xenbase

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-990630-11, ZDB-GENE-990630-10
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