GEISHA - A Chicken Embryo Gene Expression Database
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COL4A1
collagen type IV alpha 1 chain

The human orthologue of this gene is associated
with the following human diseases:
Gene
Official SymbolCOL4A1
Official Full Namecollagen type IV alpha 1 chain
CGNC ID12637
also known ascollagen alpha-1(IV) chain|collagen IV a1 chain|collagen, type IV, alpha 1
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_001162399
PolypeptideNP_001155871
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.4258
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human1282ENSG00000187498MIM:611773MIM:120130
Mouse12826ENSMUSG00000031502All phenotypic alleles (15):Chemically induced(11) Radiation induced(2) Targeted, knock-out(1) Targeted, other(1) MGI:88454
Xenopus100124870, 3737646451484
Zebrafish554269ENSDARG00000055009ZDB-GENE-081105-114ZFIN:ZDB-GENE-081105-114
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene395530
Ensembl GeneENSGALG00000016841
KEGGgga:395530
GEISHA IdCOLIVA1.Halfter.2008Data SourcePublication
Complete cDNA Template Probeshow
GCGCCGCGGCCGGCACGGAGGGGAGAGGCGTGCATGTGGGACCGGCCCCGAGGAGCCCCCACGCCGCGCTGAGCCGCCG
GCGCCCCGCCGCCCAGGGACCGACGGAGCAGCGCGGTGCGCGGTAACATGTGGCGTTGGCTGGGCTTCGGGCTGCTGCT
GAGCGCCGAGCTCAGCGCCGTGTCCGCCGCGGGTTGTTCTGGTTGTGGAAAATGTGACTGCAGTGGAGTAAAAGGACAA
AAGGGAGAAAGAGGCCTTCCGGGACTACAGGGTGTGATTGGGTTTCCTGGAATGCAAGGACCTGAAGGTCCCCCTGGGC
CACCAGGACTTAAGGGTGATACTGGAGAACCAGGGCTGCCAGGAACAAAAGGAACAAGAGGCCCACCAGGACCATCAGG
ATTTCCAGGAAACCCAGGCCTCCCTGGCATTCCTGGACAAGATGGCCCTCCTGGTCCACCTGGCATTCCAGGATGTAAT
GGCACAAAGGGTGAAAGAGGTCCAGTAGGTCCCCCAGGTTTACCGGGACTGACTGGAAGCATAGGACCCCCAGGACCTC
CTGGAATTAAGGGAGATCCAGGTGAAGTGATTGGTATTTTACCTCCTAGTGTGCTAAAAGGTGATAAAGGCTTTCCTGG
CCAACCTGGACTACCTGGTCCACCTGGAACTCCAGGGTTTCAGGGACCAATGGGGCCACCAGGGATTCCAGGAGAACCA
GGTCCCCCCGGGCCACCAGGACCCCCAGGCGAGAAGGGCTACATGGGCTTGGGCTTTCAAGGTCCCAAAGGTGAAAAGG
GAGAACAAGGGGTCCAGGGTCCCCCGGGGCCACCAGGACCAGCACCACACATGAAAGAAAAAGGAAGCGAAATCATAAA
GGGAGAAAAGGGTGAGCCAGGTGAAAAGGGTGAACAGGGAGTCCCAGGATTGCCAGGCTCAGGTTACAGAGGAGAAAAG
GGTGAACCTGGGAAGCCCGGTCCACGTGGAAAGCCTGGAAAAGATGGTGAACCAGGACCAAAAGGAGAACCCGGCTTGC
CTGGAGGGTTTGGGATTCCAGGAAGGCCTGGGGAACCTGGTGCTAAGGGTGAAAAAGGTGATCAAGGTCCTCAAGGGCC
TCCAGGAAGAATTATAGATGCTGGACCAATAGATACTTTTGGTGAAAAAGGAGACCCTGGAGTTTCAGGTTTGCCTGGA
CTAAAAGGTCAAAAAGGTGAAAAAGGTTTCCCTGGTGCACAAGGGATCCCAGGAATTCCAGGTCGACCAGTTCCAGACA
TGGTAGGATCACCTGGTGTCCCTGGCCAGAGAGGTGAAAAAGGTGAAAAGGGTTCTCCAGGATTCCCTATACCTGGACC
TCCTGGAAGAGATGGTTTCCCAGGCCCACCCGGGTTGCCCGGCCCACCAGGTCCTCCAGGTGTAACAGATGGAATAGAT
CAATGTCAGCAAGGGCAACCTGGTGCACCAGGTGTACCTGGACCTCCAGGGCAACATGGATTTCCAGGAGAGATGGGAG
AGAAAGGTGAAAAAGGTGAAACCTGTGCCTTGTGTGATAAAGTAGGACCCCCTGGACTTCCAGGACCACAAGGACTACC
GGGTCCAGCAGGTTTTCCGGGACAGTCAGGTTTCAAGGGTGACAGAGGCTTACCTGGACTTGATGGCCTTCCAGGCGTA
CCCGGGCCCCCAGGCGCTCCAGGACTCATTGGCCTCCCTGGGGCAAAAGGAGAACCAGGAGACTTTACTTATGATTCCA
TCCTGAAAGGTGAGAAGGGAGATCCTGGTTTCCCAGGACAACCAGGTATTCCTGGAAGAGAAGGAACACCAGGAAAAGA
CGGATTGCCAGGTCCTCAAGGTCCAAAAGGAGCATCGGGTACAGCTGGCTTGAAAGGAGAACGTGGTCCCCCTGGACAA
CCTGGATTCCCTGGAGTACGTGGTGAAAGAGGTTTACCTGGCTCTCCTGGGGTAGGCACTGCAGGGTTACCTGGTGACA
AAGGAGAGAGAGGTTTTGCTGGAACTCCAGGTTTACCAGGTCTTCCAGGAACAAAAGGTGAAGCAGGACGAACTGTACC
ACTCCCTGGACCTCCTGGGGCAGATGGCCTTCCTGGACCACCTGGTTTCCCTGGACCCCAAGGTGACAAAGGGAATCCT
GGGCTTCCGGGGAGACCTGGCCTGCCAGGAGAAAAAGGTGCTGTTGGGCAGCCAGGTATAGGGTTTCCTGGACCTCCAG
GACCCAAAGGTTTCCCAGGTCAGCCTGGCTCACCTGGTCCTCCGGGTACTCCTGGAACCCCTGGCCTGGATGGTTTTCC
AGGCACACCAGGTTTACAAGGTCAAAAAGGTGAACCTGGAGTGGGTCTCCCTGGTCCTAAAGGGTTACCAGGCATCCCA
GGTCCAGCTGGCATCCCTGGAGAAAAAGGAAATCCAGGGCTGCCTGGCTTACGAGGTGAACAAGGATTCCCAGGTGTAC
CTGGACAACAAGGATTTAGAGGAGATCCAGGCCTCCCTGGACTACAGGGCTTGCCAGGCCCCCAGGGCTCACCAGGAGT
GGGCCCACCGGGATTGCCAGGGCCCGCTGGGCAGCCAGGACCTGAGGGGCCACCAGGATTTCCTGGAATAAAAGGAGAA
AGGGGCTTCCCTGGTATCCCAGGTCTAGATATGCCAGGGCCAAAAGGAGATAAAGGTAGCCAGGGCCAGCCTGGAGTAC
CAGGGTCTGTGGGGCTACCTGGCCTGCCAGGTCCACAAGGATCTGTTGGACTGAAAGGATCAGCAGGAGCCAAAGGAGA
AATGGGAGTTATGGGAACTCCAGGGTTGCCAGGGACTCCTGGACCAGTTGGAGATCGAGGGTTGCCTGGTGAAAAAGGT
AGCCAAGGTTTGAAAGGTGTGGTTGGACCACAGGGTGAACCAGGTGTCAAAGGGGATAAAGGTGAAGCTGGTCTTCCGG
GAATACCTGGAAGCATGGACACCATGGACATGGTTAGTCTCAAAGGCCAAAAGGGAGATCCTGGAGAAAAAGGGGACCT
TGGTCCAACAGGAGAAAAAGGGTTACGTGGGGAGTATGGAGAACCAGGAATTCCAGGAAGGGATGGTGAACCTGGTACT
CCGGGACAACCAGGACCAAAAGGAGATCAAGGCCCCCCAGGGTACCCAGGAGATCCAGGAATTCCAGGGCAGAAAGGAT
CAGTTGGTGAAATGGGTTTGCCAGGAACACCTGGAGAAAAGGGTCTGCCTGGAATACCAGGTTCACCAGGCACACCAGG
GTTCCCTGGGCAAAAAGGTGAAAAAGGAGACAAAGGAGCAGCAGGTTTTCCTGGAATTGGCTTTCCAGGATCTCCTGGT
GAGAAGGGAGAACCAGGAAGAACAGGCAGTCCGGGTTTGTCTGGAGACAAAGGTGAAAAGGGTAATGCAGGAATTCCAG
GAATGCCGGGTGCTCCAGGTCCCAAAGGATCCCCTGGCATTGCAGGATTTCCAGGCAACCCAGGCCTCCATGGAGCAAA
GGGTGAAAAAGGACTTCCTGGCTTAAGTGGCATCCCAGGCTTAAAAGGAGAACCAGGTGAACCTGGTGTTCCTGGTCCT
GCTGGTTCCATTGGTCAGAAGGGTGAACCAGGCTATGATGGGATTCCAGGCACAGCTGGTGCAAAGGGTGAACAAGGTG
TACCAGGTAGAGGAGTTCCAGGATATCCAGGTGCAAAGGGAGATAAAGGTGCAAAGGGTGAAGTGGGTTTCCCAGGATC
CCCAGGAATTCCAGGGATTCCAGGCTTAAAAGGAGAACAAGGGTATGCTGGCCCACCCGGCCCTAAAGGCAACCAAGGT
CTTCCTGGACTACCAGGAAGTGCAATTGAGGGCCCTAAAGGAGACAGAGGACCACAAGGCCAACCCGGCCTTCCAGGTT
TACCAGGTCCAACGGGGCCACCAGGACCTCCAGGTCTGAAGGGAGCTAAAGGAGAGCAGGGAAGCGATGGCTGGCCTGG
AACTCCTGGAGGTCCAGGAGATAAAGGCGATCCAGGTTTCCAGGGACTGCCAGGTAGTCCTGGTTTGCCAGGAGGTGCT
GGTGAAAAGGGTGATCTAGGGCCTCCAGGTGTTCCAGGTGTTCCAGGTCCAAAAGGATCTGCAGGCTTCCCAGGCCTCA
AGGGTGAGCGAGGTGACCAAGGTCTTCCTGGATCTAAAGGTTTACAAGGCCCGCCGGGCCCCCCAGGTGCTTTTCAGCT
TATCAAAGGAGATCCTGGCTTACCTGGCCCGGTAGGACCAGTTGGTCTCAAAGGATTCCCAGGACATCCAGGTCCCAAA
GGACAGCAAGGAGTAACAGGGCCTTCAGGTGTACCTGGACCACCTGGTAGTCCAGGGTTTGATGGCAGACCAGGGCAAA
AAGGAGAAGTTGGTCCTTATGGTCCTCCAGGGCCCAGAGGAATCCCTGGTCCGCCTGGCCCTGAAGGTTTGCCTGGGGC
TATGGGTCCACCAGGTGCAGCATCTGTTGCTCATGGCTTCCTTGTCACCAGACACAGTCAAACCACTGAAGAACCACAA
TGTCCATTTGGAACAAGGCTGATTTACCATGGCTACTCCCTTCTTTATGTACAAGGAAATGAAAGAGCACACGGTCAAG
ATCTGGGCACTGCAGGGAGCTGTCTTCGTAAATTTAGTACTATGCCTTTCTTATTTTGCAATATCAACAATGTATGTAA
CTTTGCATCAAGGAATGACTATTCCTACTGGCTGTCCACTCCTGAACCCATGCCAATGAGTATGGCACCTATCACTGGT
GAAAGTATCAGACCATTCATCAGCAGATGCTCTGTGTGTGAAGCTCCTGCTATGGTAATCGCCGTTCACAGTCAAACAA
TCCAGATACCACCATGTCCTGAAGGCTGGAGTTCCCTTTGGATTGGTTACTCCTTTGTCATGCACACCAGTGCTGGTGC
TGAGGGCTCTGGCCAGGCCCTGGCGTCTCCTGGTTCCTGCCTGGAGGAGTTCCGCAGCGCTCCCTTCATTGAATGCCAT
GGCCGGGGCACCTGCAATTATTATGCAAATGCTTACAGCTTCTGGCTTGCCACTATAGAGAGGAATGAGATGTTCAAGA
AACCGACTCCGTCAACTTTGAAAGCAGGGGATCTGCGCTCCAACGTTAGCCGTTGTCAAGTCTGTATGAGAAATACATA
ATGACTTTTGAATTTCAACTTATTTCACACAATATGGTGCTATTTGTTTAACAGCAATGAAGCCTAGACATATATCATA
TGTACCTCATTGTTGTCCAATATGAAAACAGTAAAGTGCCTTTTAGGAACTTGCATAACTAACACACACTGCTTTACTG
GCCCTGTCCTTGCTGAAGAAGAAAAGAGACAACAAAGATAAGCTTCAAATGTTGACATGCCAAATGGCACTTTTGATCA
AAAAATATATATTTTTTATATAAATGCAATGCACTGATAGAATAAAGAGTCAGCATTCGTCCAGAAAAATGCAAAGGTG
CTAGGAGGTATGCAGTTCTGCCTTATACTGTTGGACTCCCCTTTCTCATTCTTGTATTATATATTTAGATTCATTTTTC
TTCCCCAGATGAGTTTGTTGTTATCATTATTTAGGTGTCTCAAAATCCCAGACTCTTGTGTATGTACTTATTGTTCCTT
ATTGTACAAAGCAATACTAATGTAAAAAAAAAAAAAAAAAAAAAAAAAGAGTTCTGGGATTACAGACTGTGGTTAAGCA
ACAAGTAACCATCTTTTCAAAGCATAGATTGCCATCCCGCAAACCTTTGCTTCTGTTGTAGTCCTTAGCGCTATTGGTT
GTAATGGGACTACACCTGGAAGAGACTTCTGAATCGGTCTCCCAATAGGCAAGTAAGTGTTTCTGCTATGTTGGTACTA
TGCAGCTTCTTCATGCAGTAGAACAAACTTTCCTGTGGAATAAAGAATGATCCAGCAATGGTCAAGAAAAAAAATATAT
AAATGTGTTAGTAATTTATATAGAGATCAACCATTAGTCTTTGAGTTTATCATTTCAGAAAGAAGCTTACAGAAGTTTT
CTTCTTTGCAGTGTCATAAATTCGGTGTTAAATACCATAATATGATGTGAAATGTTCATTTTATATAGGTCATTTCAAT
TCCAAATTTGCAGAGACTGAACCCAGGTTAATAGCTATTTGTGTTTATTATAGTAAATCCCGCTTTGAGCTTGTAGTCT
TTATTCTGTATTTAATATTTTTCAGGGTTTTAAACACTACTCACACACTGAATGACTTGATTTTGAGAAGTATAAGGCC
TTCATTTTGTTAATACCGTGCCAAAAAATTCTTTACAGTGGCCTCATTAATATTTCTAAAGAATTTCTATGCAATGACA
CCAATGTTTGAGCACATCTGCATCCAGAAGTGTTTTACAGACTATCATCATGCAAATACCAAAAGTTTTTTTTTTTTTT
ACAAATGCCGAGGCCTTTGTGTAATTTCTTAAGTGTGTATTATTTCTTACAAAGTCAAGTTTGTAATAAAACTATTTGT
GTAAAAA
CitationHalfter W, Dong S, Dong A, Eller AW, Nischt R. Origin and turnover of ECM proteins from the inner limiting membrane and vitreous body. Eye (Lond). 2008 Oct;22(10):1207-13. doi: 10.1038/eye.2008.19. Epub 2008 Mar 14.
Copyright© 2013 The Royal College of Ophthalmologists
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI NM_001162399.1
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25-29
stage 29
stage 29
Eye
Lens
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.4258

Mouse

EmageMGI:88454
EurexpressMGI:88454
MGI GXDMGI:88454

Frog

Xenbase6451484

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-081105-114
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