GEISHA - A Chicken Embryo Gene Expression Database
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EBF1
early B-cell factor 1

Gene
Official SymbolEBF1
Official Full Nameearly B-cell factor 1
CGNC ID49357
also known asEBF, transcription factor COE1|early B-cell factor 1 protein, EBF1, early B-cell factor 1
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Sequence Information
Genomic
RNANM_204752
PolypeptideNP_990083
Gene Expression
In Situ HybridizationGEISHA
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human1879ENSG00000164330MIM:164343
Mouse13591All phenotypic alleles (2):Spontaneous(1) Targeted, knock-out(1) MGI:95275
Xenopus6051343
Zebrafish565310ENSDARG00000016116ZDB-GENE-081028-51, ZDB-GENE-090814-2ZFIN:ZDB-GENE-081028-51, ZFIN:ZDB-GENE-090814-2
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene395512
Ensembl Gene
KEGGgga:395512

Entry 1

GEISHA IdEBF1.Mella.2004Data SourcePublication
Complete cDNA Template Probeshow
ATGTTTGGGATCCAGGAAAGCATCCTGCGGAGCGGGGGCAGCATGAAGGAGGAGCCCCTCGGCGCGGGGATGAACGCGG
TGCGGACGTGGATGCAGGGAGCGGGCGTCCTGGACGCCAGCACGGCCGCGCAGAGCGGAGTGGGTCTGGCCCGGGCTCA
CTTCGAGAAGCAGCCTCCTTCCAACCTGAGGAAGTCCAACTTTTTCCACTTCGTCCTGGCTCTGTATGACCGGCAGGGG
CAGCCCGTGGAGATCGAGCGCACCGCCTTCGTGGGCTTCGTGGAGAAGGAGAAGGAAGCTAACAGCGAAAAGACCAACA
ACGGGATCCACTACCGCCTGCAGCTGCTCTACAGCAATGGGATCAGGACGGAACAGGATTTCTACGTTCGCCTCATCGA
CTCCATGACCAAGCAGGCGATAGTATATGAAGGCCAAGACAAGAACCCCGAAATGTGCCGAGTTCTGCTCACGCACGAA
ATAATGTGCAGCCGCTGTTGTGACAAGAAAAGCTGTGGCAACCAAAATGAGACTCCATCAGATCCAGTGATAATTGACA
GGTTCTTCTTGAAATTTTTTCTCAAATGTAACCAAAATTGTCTAAAAAATGCAGGAAACCCTCGAGACATGACGAGATT
TCAGGTTGTGGTGTCTACAACAGTCAATGTTGATGGCCATGTGTTGGCAGTGTCGGACAATATGTTTGTGCACAACAAT
TCCAAGCATGGGCGGAGAGCTCGGAGACTTGACCCTTCGGAAGGTACGCCTTCTTATCTGGAACATGCTACACCATGTA
TCAAAGCCATCAGTCCAAGTGAAGGATGGACTACAGGAGGTGCCACTGTCATCATCATAGGAGACAATTTCTTTGATGG
GTTACAGGTCATCTTCGGCACCATGCTGGTTTGGAGTGAGCTGATTACTCCTCATGCCATCCGCGTACAGACACCTCCC
CGACATATCCCAGGGGTTGTAGAAGTCACATTGTCCTACAAGTCTAAGCAGTTTTGCAAGGGAACGCCTGGAAGATTCA
TTTACACAGCTCTGAACGAACCCACCATTGACTATGGTTTCCAAAGGTTACAGAAGGTTATCCCCCGGCACCCTGGTGA
CCCTGAACGCTTGCCAAAGGAAGTAATACTTAAGAGGGCTGCTGATTTAGTAGAAGCACTCTACGGTATGCCACATAAT
AACCAGGAAATAATCCTGAAAAGAGCAGCAGACATCGCAGAAGCACTCTACAGTGTCCCTCGCAATCATAACCAGCTCC
CCGCCCTTGCTAACACGTCAGTCCACGCAGGTATGATGGGAGTGAATTCCTTTAGTGGTCAACTAGCTGTCAACGTATC
CGAAGCCTCACAGGCCACCAGTCAGGGTTTTACTCGCAACTCAAGCAGCGTGTCACCTCACGGCTATGTGCCAAGCACC
ACCCCTCAGCAGACAAATTACAACTCTGTCACAACAAGCATGAATGGCTATGGGAATGCTGGAATGTCAAATTTAGGCG
GTTCTCCAACCTTCCTGAATGGATCTGCTGCCAATTCTCCCTATGCCATTGTGCCATCAAGTCCAACAATGGCCTCCTC
CACTAGCCTCCCGTCCAACTGTAGCAGTTCGTCTGGGATTTTCTCGTTCTCACCAGCCAACATGGTCTCAGCAGTGAAA
CAGAAGAGTGCTTTTGCGCCTGTTGTGAGACCGCAAACTTCTCCTCCTCCCACCTGCACCAGCACCAACGGCAATAGCC
TGCAAGCTATATCTGGCATGATTGTTCCCCCCATGTGA
CitationMella S, Soula C, Morello D, Crozatier M, Vincent A. Expression patterns of the coe/ebf transcription factor genes during chicken and mouse limb development. Gene Expr Patterns. 2004 Sep;4(5):537-42.
CopyrightReprinted with permission from Elsevier. Copyright © 2004 Elsevier B.V. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204752).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25-29
stage 29
stage 29
stage 29
Leg Mesenchyme
Connective Tissue
Figure 3 compares the expression patterns of ebf1-3 and scx in hindlimb of E6 (HH stage 29) chicken embryos.
surrounding the perichondrial layer

Entry 2

GEISHA IdEBF1.Merchan.2011Data SourcePublication
Complete cDNA Template Probeshow
CAGTCAATGTTGATGGCCATGTGTTGGCAGTGTCGGACAATATGTTTGTGCACAACAATTCCAAGCATGGGCGGAGAGC
TCGGAGACTTGACCCTTCGGAAGGTACGCCTTCTTATCTGGAACATGCTACACCATGTATCAAAGCCATCAGTCCAAGT
GAAGGATGGACTACAGGAGGTGCCACTGTCATCATCATAGGAGACAATTTCTTTGATGGGTTACAGGTCATCTTCGGCA
CCATGCTGGTTTGGAGTGAGCTGATTACTCCTCATGCCATCCGCGTACAGACACCTCCCCGACATATCCCAGGGGTTGT
AGAAGTCACATTGTCCTACAAGTCTAAGCAGTTTTGCAAGGGAACGCCTGGAAGATTCATTTACACAGCTCTGAACGAA
CCCACCATTGACTATGGTTTCCAAAGGTTACAGAAGGTTATCCCCCGGCACCCTGGTGACCCTGAACGCTTGCCAAAGG
AAGTAATACTTAAGAGGGCTGCTGATTTAGTAGAAGCACTCTACGGTATGCCACATAATAACCAGGAAATAATCCTGAA
AAGAGCAGCAGACATCGCAGAAGCACTCTACAGTGTCCCTCGCAATCATAACCAGCTCCCCGCCCTTGCTAACACGTCA
GTCCACGCAGGTATGATGGGAGTGAATTCCTTTAGTGGTCAACTAGCTGTCAACGTATCCGAAGCCTCACAGGCCACCA
GTCAGGGTTTTACTCGCAACTCAAGCAGCGTGTCACCTCACGGCTATGTGCCAAGCACCACCCCTCAGCAGACAAATTA
CAACTCTGTCACAACAAGCATGAATGGCTATGGGAATGCTGGAATGTCAAATTTAGGCGGTTCTCCAACCTTCCTGAAT
GGATCTGCTGCCAATTCTCCCTATGCCATTGTGCCATCAAGTCCAACAATGGCCTCCTCCACTAGCCTCCCGTCCAACT
GTAGCAGTTCGTCTGGGATTTTCTCGTTCTCACCAGCCAACATGGTCTCAGCAGTGAAACAGAAGAGTGCTTTTGCGCC
TGTTGTGAGACCGCAAACTTCTCCT
CitationMerchán,P, Bardet, SM, Puelles, L, Ferran, JL, Comparison of Pretectal Genoarchitectonic Pattern between Quail and Chicken Embryos. Front Neuroanat. 2011; 5: 23. Prepublished online 2010 December 29. Published online 2011 April 5
CopyrightCopyright © 2011 Merchán, Bardet, Puelles and Ferran.
CommentsThe probe was amplified by PCR using the following primers: F1: 5′-CAGTCAATGTTGATGGCCAT-3′; F2: 5′-GCACAACAATTCCAAGCAT-3′; R: 5′-AGGAGAAGTTTGCGGTCTCA-3' and was extracted from NCBI acc. # NM_204752.1.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25-28
stage 26
stage 26
stage 26
stage 26
stage 27
stage 27
stage 27
stage 28
stage 28
Diencephalon
Mesencephalon
Pineal Gland
CoP commissural pretectum,
Hab habenular region
JcP juxtacommissural pretectum,
OT optic tectum
PcP precommissural pretectum,
Quail
Th Thalamus,
mes mesencephalon,

Entry 3

GEISHA IdEBF1.Bielle.2011Data SourcePublication
Complete cDNA Template Probeshow
ATGTTTGGGATCCAGGAAAGCATCCTGCGGAGCGGGGGCAGCATGAAGGAGGAGCCCCTCGGCGCGGGGATGAACGCGG
TGCGGACGTGGATGCAGGGAGCGGGCGTCCTGGACGCCAGCACGGCCGCGCAGAGCGGAGTGGGTCTGGCCCGGGCTCA
CTTCGAGAAGCAGCCTCCTTCCAACCTGAGGAAGTCCAACTTTTTCCACTTCGTCCTGGCTCTGTATGACCGGCAGGGG
CAGCCCGTGGAGATCGAGCGCACCGCCTTCGTGGGCTTCGTGGAGAAGGAGAAGGAAGCTAACAGCGAAAAGACCAACA
ACGGGATCCACTACCGCCTGCAGCTGCTCTACAGCAATGGGATCAGGACGGAACAGGATTTCTACGTTCGCCTCATCGA
CTCCATGACCAAGCAGGCGATAGTATATGAAGGCCAAGACAAGAACCCCGAAATGTGCCGAGTTCTGCTCACGCACGAA
ATAATGTGCAGCCGCTGTTGTGACAAGAAAAGCTGTGGCAACCAAAATGAGACTCCATCAGATCCAGTGATAATTGACA
GGTTCTTCTTGAAATTTTTTCTCAAATGTAACCAAAATTGTCTAAAAAATGCAGGAAACCCTCGAGACATGACGAGATT
TCAGGTTGTGGTGTCTACAACAGTCAATGTTGATGGCCATGTGTTGGCAGTGTCGGACAATATGTTTGTGCACAACAAT
TCCAAGCATGGGCGGAGAGCTCGGAGACTTGACCCTTCGGAAGGTACGCCTTCTTATCTGGAACATGCTACACCATGTA
TCAAAGCCATCAGTCCAAGTGAAGGATGGACTACAGGAGGTGCCACTGTCATCATCATAGGAGACAATTTCTTTGATGG
GTTACAGGTCATCTTCGGCACCATGCTGGTTTGGAGTGAGCTGATTACTCCTCATGCCATCCGCGTACAGACACCTCCC
CGACATATCCCAGGGGTTGTAGAAGTCACATTGTCCTACAAGTCTAAGCAGTTTTGCAAGGGAACGCCTGGAAGATTCA
TTTACACAGCTCTGAACGAACCCACCATTGACTATGGTTTCCAAAGGTTACAGAAGGTTATCCCCCGGCACCCTGGTGA
CCCTGAACGCTTGCCAAAGGAAGTAATACTTAAGAGGGCTGCTGATTTAGTAGAAGCACTCTACGGTATGCCACATAAT
AACCAGGAAATAATCCTGAAAAGAGCAGCAGACATCGCAGAAGCACTCTACAGTGTCCCTCGCAATCATAACCAGCTCC
CCGCCCTTGCTAACACGTCAGTCCACGCAGGTATGATGGGAGTGAATTCCTTTAGTGGTCAACTAGCTGTCAACGTATC
CGAAGCCTCACAGGCCACCAGTCAGGGTTTTACTCGCAACTCAAGCAGCGTGTCACCTCACGGCTATGTGCCAAGCACC
ACCCCTCAGCAGACAAATTACAACTCTGTCACAACAAGCATGAATGGCTATGGGAATGCTGGAATGTCAAATTTAGGCG
GTTCTCCAACCTTCCTGAATGGATCTGCTGCCAATTCTCCCTATGCCATTGTGCCATCAAGTCCAACAATGGCCTCCTC
CACTAGCCTCCCGTCCAACTGTAGCAGTTCGTCTGGGATTTTCTCGTTCTCACCAGCCAACATGGTCTCAGCAGTGAAA
CAGAAGAGTGCTTTTGCGCCTGTTGTGAGACCGCAAACTTCTCCTCCTCCCACCTGCACCAGCACCAACGGCAATAGCC
TGCAAGCTATATCTGGCATGATTGTTCCCCCCATGTGA
CitationBielle F, Marcos-Mondejar P, Keita M, Mailhes C, Verney C, Nguyen Ba-Charvet K, Tessier-Lavigne M, Lopez-Bendito G, Garel S. Slit2 activity in the migration of guidepost neurons shapes thalamic projections during development and evolution. Neuron. 2011 Mar 24;69(6):1085-98.
CopyrightCopyright © 2011 Elsevier Inc. All rights reserved.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_204752.1 ).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25-27
stage 27
stage 27
Telencephalon
 

Entry 4

GEISHA IdEBF1.Sabado.2012Data SourcePublication
Complete cDNA Template Probeshow
TATCCCANGGGTTGTAGAAGTCACATTGTCCTACAAGTCTAAGCAGTTTGCAAGGGAACGCCTGGAAGATTCATTTACA
CAGCTCTGAACGAACCCACCATTGACTATGGTTTCCAAAGGTTACAGAAGGTTATCCCCCGGCACCCTGGTGACCCTGA
ACGCTTGCCAAAGGATTAATACTTAAGAGGGCTGCTGATTTAGTAGAAGCACTCTACGGTATGCCACATAATAACCAGG
AAATAATCCTGAAAAGAGCAGCAGACATCGCAGAAGCACTCTACAGTGTCCCTCGCAATCATAACCAGCTCCCCGCCCT
TGCTAACACGTCAGTCCACGCAGGAATGATGGGAGTGAATTCCTTTAGTGGTCAACTAGCTGTCAACGTATCCGAAGCC
TCACAGGCCACCAGTCAGGGTTTTACTCGCAACTCAAGCAGCGTGTCACCTCACGGCTATGTGCCAAGCACCACCCCTC
AGCAGACAAATTACAACTCTGTCACAACAAGCATGAATGGCTATGGGAATGCTGGAATGTCAAATTTAGGCGGTTCTCC
AACCTTCCTGAATGGATCTGCTGCCAATTCTCCCTATGCCATTGTGCCATCAAGTCCAACAATGGCCTCCTCCACTAGC
CTCCCGTCCAACTGTAGCAGTTCGTCTGGGGATTTTCTCGTTCTCACCAGCCAACATGGTCTCAGCAGTGAAACAGAAG
AGTGCTTTTGCGCCTGTCGTGAGACCGCAACTTCTCCTCCTCCCACTGCACAGCACCAACGGCAATAGCCTGCAAGCTA
TATCTGGCATGAATTGTTCCCCCCATGTGCAAGAATTGGCTTGACGAATTTATTAATGAAGAGGTGAATTCTGGTTCAG
AAAGAATCTGACACAAGGTCCAGAGCGGAATTTTTACCAGGGCCTTTTTAAAATAATATTAAAAAAAGAT
CitationSabado V, Barraud P, Baker CV, Streit A. Specification of GnRH-1 neurons by antagonistic FGF and retinoic acid signaling. Dev Biol. 2012 Feb 15;362(2):254-62.
CommentsThe cDNA template for the EBF1 antisense probe was obtained from BBSRC - ChEST910a18 as described in the publication.
no images

Entry 5

GEISHA IdEBF1.Ferran.2007Data SourcePublication
Complete cDNA Template Probeshow
ATGTTTGGGATCCAGGAAAGCATCCTGCGGAGCGGGGGCAGCATGAAGGAGGAGCCCCTCGGCGCGGGGATGAACGCGG
TGCGGACGTGGATGCAGGGAGCGGGCGTCCTGGACGCCAGCACGGCCGCGCAGAGCGGAGTGGGTCTGGCCCGGGCTCA
CTTCGAGAAGCAGCCTCCTTCCAACCTGAGGAAGTCCAACTTTTTCCACTTCGTCCTGGCTCTGTATGACCGGCAGGGG
CAGCCCGTGGAGATCGAGCGCACCGCCTTCGTGGGCTTCGTGGAGAAGGAGAAGGAAGCTAACAGCGAAAAGACCAACA
ACGGGATCCACTACCGCCTGCAGCTGCTCTACAGCAATGGGATCAGGACGGAACAGGATTTCTACGTTCGCCTCATCGA
CTCCATGACCAAGCAGGCGATAGTATATGAAGGCCAAGACAAGAACCCCGAAATGTGCCGAGTTCTGCTCACGCACGAA
ATAATGTGCAGCCGCTGTTGTGACAAGAAAAGCTGTGGCAACCAAAATGAGACTCCATCAGATCCAGTGATAATTGACA
GGTTCTTCTTGAAATTTTTTCTCAAATGTAACCAAAATTGTCTAAAAAATGCAGGAAACCCTCGAGACATGACGAGATT
TCAGGTTGTGGTGTCTACAACAGTCAATGTTGATGGCCATGTGTTGGCAGTGTCGGACAATATGTTTGTGCACAACAAT
TCCAAGCATGGGCGGAGAGCTCGGAGACTTGACCCTTCGGAAGGTACGCCTTCTTATCTGGAACATGCTACACCATGTA
TCAAAGCCATCAGTCCAAGTGAAGGATGGACTACAGGAGGTGCCACTGTCATCATCATAGGAGACAATTTCTTTGATGG
GTTACAGGTCATCTTCGGCACCATGCTGGTTTGGAGTGAGCTGATTACTCCTCATGCCATCCGCGTACAGACACCTCCC
CGACATATCCCAGGGGTTGTAGAAGTCACATTGTCCTACAAGTCTAAGCAGTTTTGCAAGGGAACGCCTGGAAGATTCA
TTTACACAGCTCTGAACGAACCCACCATTGACTATGGTTTCCAAAGGTTACAGAAGGTTATCCCCCGGCACCCTGGTGA
CCCTGAACGCTTGCCAAAGGAAGTAATACTTAAGAGGGCTGCTGATTTAGTAGAAGCACTCTACGGTATGCCACATAAT
AACCAGGAAATAATCCTGAAAAGAGCAGCAGACATCGCAGAAGCACTCTACAGTGTCCCTCGCAATCATAACCAGCTCC
CCGCCCTTGCTAACACGTCAGTCCACGCAGGTATGATGGGAGTGAATTCCTTTAGTGGTCAACTAGCTGTCAACGTATC
CGAAGCCTCACAGGCCACCAGTCAGGGTTTTACTCGCAACTCAAGCAGCGTGTCACCTCACGGCTATGTGCCAAGCACC
ACCCCTCAGCAGACAAATTACAACTCTGTCACAACAAGCATGAATGGCTATGGGAATGCTGGAATGTCAAATTTAGGCG
GTTCTCCAACCTTCCTGAATGGATCTGCTGCCAATTCTCCCTATGCCATTGTGCCATCAAGTCCAACAATGGCCTCCTC
CACTAGCCTCCCGTCCAACTGTAGCAGTTCGTCTGGGATTTTCTCGTTCTCACCAGCCAACATGGTCTCAGCAGTGAAA
CAGAAGAGTGCTTTTGCGCCTGTTGTGAGACCGCAAACTTCTCCTCCTCCCACCTGCACCAGCACCAACGGCAATAGCC
TGCAAGCTATATCTGGCATGATTGTTCCCCCCATGTGA
CitationFerran JL, Sánchez-Arrones L, Sandoval JE, Puelles L. A model of early molecular regionalization in the chicken embryonic pretectum. J Comp Neurol. 2007 Dec 1;505(4):379-403.
CopyrightCopyright © 1999–2012 John Wiley & Sons, Inc. All Rights Reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (Acc. # NM_204752.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25
stage 25
stage 25
stage 25
Diencephalon
ABB alar basal boundary
JcV, ventral subdomain of juxtacommissural pretectum
PcP precommissural pretectum

Mouse

EmageMGI:95275
MGI GXDMGI:95275

Frog

Xenbase6051343

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-081028-51, ZDB-GENE-090814-2
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