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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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BARX2
BARX homeobox 2

Gene

Official Symbol	BARX2
Official Full Name	BARX homeobox 2
CGNC ID	813
also known as	BARX2B, homeobox protein BarH-like 2\|BarH-like homeobox 2\|homeodomain transcription factor BARX2B, Barx2
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_204896
Polypeptide	NP_990227
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.3060

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	8538	ENSG00000043039		MIM:604823
Mouse	12023	ENSMUSG00000032033	All phenotypic alleles (3):Targeted, knock-out(1) Targeted, other(2)	MGI:109617
Xenopus	100488405			852580
Zebrafish	100002200	ENSDARG00000041098	ZDB-GENE-081120-4	ZFIN:ZDB-GENE-081120-4

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	395714
Ensembl Gene
KEGG	gga:395714

Entry 1

GEISHA Id	BARX2.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Probe	show CCAGGNTCACACGGAGCATGAGACTACTGCCTCCTGACTCTGAGCCTGGCTGTTCATTTTCTCTTCTGCTTCAATTTCC TCTGAGGTGGGAATGGAGTTTTTCTTTGGACGGCCTTTGGGCTTTGTTGGAGCTTCCTGCCCACCTTTCAACACCATTT TCTTCCACTTCATCCTGCGGTTCTGGTACCACGTCTTCACCTGGAGCTGAGTCAGCCCCAGCGACTGCGCTAAGTCAAG CCTGTCGGGTGTAGACAAATACTTTTGCTTCTGGAATTTCTTCTCCAAGCCCATCAGTTGGAGCTCTGTGAAGATGGTC CGACTCCGGCGTGGCTTTTTTAACCGAGGTGTGGGCTGCTCTGCCTCCGACTCGCTGCTGCCGTGGGTCTCGCTGGCTG GCGTCTCCGAGCTCGCGGTGGCTGAGGTCTGAGCTGGCAGCACATGGGAGCTGGTGGCAGCCGGAACGAGGTGAGGGAC CACGGAGGGCTGCCTGGTGATAACGGAGATGAGAGGATATGCCCTCAGAGAAGGGGACCCCGCGCAGGAGTGCAGCGGC TTGGGCCGGACCAGGAGGGACGGACAGACGGAATAAANGGGAAAGTAAA

Stage

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Comments (click to highlight)

1-3

stage 3

Primitive Streak

Low level expression.

4-6

stage 4

stage 5

Early Mesoderm
Primitive Streak

13-18

stage 13

stage 15

stage 18

Blood Vessels
Forebrain
Head Mesenchyme
Lateral Plate Mesoderm
Lung
Midgut
Somites

19-24

stage 22

stage 23

Eye
Face Mesenchyme
Head Mesenchyme
Leg Mesenchyme
Pharyngeal Arches and Clefts
Somatic Mesoderm
Somites
Wing Mesenchyme

stage 25

Eye
Face Mesenchyme
Leg Mesenchyme
Nasal Placode/Nerve
Oral Pharynx
Pharyngeal Arches and Clefts
Somatic Mesoderm
Somites
Wing Mesenchyme

Entry 2

GEISHA Id	Barx2.Noden.2006	Data Source	Publication
Complete cDNA Template Probe	show AAGTNGGAGTCCACGCGGTGGCGGCCGCCGCCGCCCTAGGCAGCCCCGCGCAGCCCCGCGGCCCCGGGGCCGGCCATGC ACTGCCCGCCGCAGCCCCGGCTCGCCAAGGCAGGCAGGAGGCGCTACAAGACTTTCATGATCGACGAAATTCTCTCCAA GGAGACGTGCGATTACTTCGAGAAACTTTCCCTCTATTCCGTCTGTCCGTCCCTCCTGGTCCGGCCCAAGCCGCTGCAC TCCTGCGCGGGGTCCCCTTCTCTGAGGGCATATCCTCTCATCTCCGTTATCACCAGGCAGCCCTCCGTGGTCCCTCACC TCGTTCCGGCTGCCACCAGCTCCCATGTGCTGCCAGCTCAGACCTCAGCCACCGCGAGCTCGGAGACGCCAGCCAGCGA GACCCACGGCAGCAGCGAGTCGGAGGCAGAGCAGCCCACACCTCGGTTAAAAAAGCCACGCCGGAGTCGGACCATCTTC ACAGAGCTCCAACTGATGGGCTTGGAGAAGAAATTCCAGAAGCAAAAGTATTTGTCTACACCCGACAGGCTTGACTTAG CGCAGTCGCTGGGGCTGACTCAGCTCCAGGTGAAGACGTGGTACCAGAACCGCAGGATGAAGTGGAAGAAAATGGTGTT GAAAGGTGGGCAGGAAGCTCCAACAAAGCCCAAAGGCCGTCCAAAGAAAAACTCCATTCCCACCTCAGAGGAAATTGAA GCAGAAGAGAAAATGAACAGCCAGGCTCAGAGTCAGGAGGCAGAGGGATCTCAAGCCCCCGAGGAGCCTAAAGTGACAG AGGAGAAGCCAGAAGTCTCTTTGGAGACAGAAGAGTCTCCAGAACATATAGCAGAGCCCTCCTCAGAGGAGGTTACGCC ATTAAGTTAAAAGGGAAAAAGAGAAGGGAAAGGG
Citation	Noden DM, Francis-West P. The differentiation and morphogenesis of craniofacial muscles. Dev Dyn. 2006 May;235(5):1194-218. Review.
Copyright	Copyright © 2006 Wiley-Liss, Inc.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204896).