GEISHA - A Chicken Embryo Gene Expression Database
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HOXC8
homeobox C8

Gene
Official SymbolHOXC8
Official Full Namehomeobox C8
CGNC ID49437
also known asHOXC-8, homeobox protein Hox-C8|homeo box C8
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_204893
PolypeptideNP_990224
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.413
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human
Mouse
Xenopus
Zebrafish
Gene Ontology
Molecular Functionsequence-specific DNA binding transcription factor activity, more...transcription regulatory region sequence-specific DNA binding
Biological Processmulticellular organismal development, transcription, DNA-templated
Cellular Componentnucleus
Links to other databases
Entrez Gene395711
Ensembl Gene
KEGGgga:395711

Entry 1

GEISHA IdHOXC8.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template PrimerACCACGGAACCTCCAGCATC
Reverse cDNA Template PrimerAATTAACCCTCACTAAAGGGGGGAAGCAAAAAGTAGGGGcDNA Template Length721
Forward cDNA Template Probeshow
TGGGGGTNCCAATAGGAANTNCTATGACATAAAAAAGGCTACAACTGGTTTGACAGGTAGTTACTGCTGTGTGAGCCTC
TCCATTCTATACTCTATAAAAGCAAATGACCGTCGTAAACATCTCGATTTATCATCTGCCATAAAACGAGACTTCAAGG
GGCTGAGAACTCAGTCCTTGCTTTCTTCTTTTTCCTCCTCTTCTTTTTCCTCTTCCTCATTCCCTTCTTCTTCCGTTTT
CTCCTCGTCTCTGGCCCCCGGCAGCTTATCTTTGTTGTTTTCTTTTTTCCACTTCATCCTCCTGTTCTGGAACCAGATC
TTCACTTGTCTCTCGGTCAGTCCCAGGGCGTGAGAGACCTCAATCCGTCGCTTCCGTGTCAAATACGGGTTGAAGAGGA
ACTCCTTTTCTAACTCCAGGGTCTGGTACCGGCTGTAAGTTTGTCTGCCACTGCGTCTTCCGGGAGCGTGAGGTCTCAT
CCATGGGAACATGAGACTGGGAGACGAATTTTGATTTAAATGCCCTTGTCCCTCGCTAGAGTTACTGTTGGAAGACGAT
TTACAGTCAGGATATTGTACAACAGTCGTCTCTTGCTGAGCACCATAAAGCGATTGCCTCGGCAGAGCTTCATATCCAT
AGAATTTAGAAGCGTCTCCGTGACACGCCAAGGCGCACGGGTTTTGCTGGTATCCAGAGTTGGAGATGCTGGAGGTTCC
GTGGT
CommentsNo expression detected at or before stage 7.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 7
stage 9
stage 10
stage 11
Lateral Plate Mesoderm
Neural Plate/Tube
Paraxial Mesoderm
Primitive Streak
Spinal Cord
Unlabeled
Stage 9+ to 10-.
Stages 6-7.
Staining observed in neural tube may be due to trapping.
13-18
stage 13
stage 17
Lateral Plate Mesoderm
Limb Buds
Paraxial Mesoderm
Somatic Mesoderm
Somites
Spinal Cord
Tail
Staining observed in neural tube may be due to trapping.
19-24
stage 19
stage 21
stage 23
Leg
Limb Buds
Paraxial Mesoderm
Somatic Mesoderm
Somites
Spinal Cord
Tail
Wing
 
25-29
stage 25
stage 29
stage 29
Leg
Somites
Spinal Cord
Surface Ectoderm
Tail
Wing
epidermis

Entry 2

GEISHA IdHOXC8.Reid.2002Data SourcePublication
Complete cDNA Template Probeshow
GAATTCCGTTGCTGTCGGCTCTACCTACCGACAGATTACAAGAGAAGTCAAGAGCACCGGGAACGCACCGTGCGGGCAC
CAGAGGCACCATGCAACGCCTTTGAGATCGCCTTTGAAATATATATATTAATAATAATTTTATAATAATAATAAAAAAG
CCACCTTTTTTATATCTATATATATCTATCTCTCTATTTTAAAAAAAAAAAAAAGACAACAACAACAACAACAAAATAA
ATAAATAAATAAATAATAAAAAAAAGCCGGACTGGTAAACAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAACAGTCCGG
GACCGTCAGCACTCATCCAGAATTAAAGCCGTCTTTTTAATTGTTTTTAATTGTTTTTTTTTTTAATTATTTTTTTCAA
TTTTTAATTTTTTTTCAATTTTTATATATATATATGGTTTTTTTTTTTGCATGCGAGGGTCATGAGTTCCTACTTTGTA
AATCCTCTCTTTTCCAAGTACAAAGGCGGCGAATCGCTGGAACCAACTTACTACGACTGCAGATTTCCACAAAGTGTTA
GCAGGAGCCATGCTCTCGTGTATGGTCCGGGCACCACTGCTCCCACCTTCCAGCACCCATCACACCACGTCCAAGAGTT
TTTCCACCACGGAACCTCCAGCATCTCCAACTCTGGATACCAGCAAAACCCGTGCGCCTTGGCGTGTCACGGAGACGCT
TCTAAATTCTATGGATATGAAGCTCTGCCGAGGCAATCGCTTTATGGTGCTCAGCAAGAGACGACTGTTGTACAATATC
CTGACTGTAAATCGTCTTCCAACAGTAACTCTAGCGAGGGACAAGGGCATTTAAATCAAAATTCGTCTCCCAGTCTCAT
GTTCCCATGGATGAGACCTCACGCTCCCGGAAGACGCAGTGGCAGACAAACTTACAGCCGGTACCAGACCCTGGAGTTA
GAAAAGGAGTTCCTCTTCAACCCGTATTTGACACGGAAGCGACGGATTGAGGTCTCTCACGCCCTGGGACTGACCGAGA
GACAAGTGAAGATCTGGTTCCAGAACAGGAGGATGAAGTGGAAAAAAGAAAACAACAAAGATAAGCTGCCGGGGGCCAG
AGACGAGGAGAAAACGGAAGAAGAAGGGAATGAGGAAGAGGAAAAAGAAGAGGAGGAAAAAGAAGAAAGCAAGGACTGA
GTTCTCAGCCCTTGAAGTCTCGTTTTATGGCAGATGATAAATCGAGATGTTTACGACGGTCATTTGCTTTTATAGAGTA
TAGAATGGAGAGGCTCACACAGCAGTAACTACCTGTCAAACAGTTGTAGCCTTTTTTATTGTCATAGAAACTTCCCCTA
CTTTTTGCTTCCCCCCCCCCCCCCACTCTTTTTGTTTTGTTTTGTTTTGCTTTGCTTTGCTTTTTAATAGCGGCGTTTT
TAGCTCCATAAATACATAGTTGGCTTCAGTGCAGCGACGGTATAAGCGGATGGG
CitationReid AI, Gaunt SJ. Colinearity and non-colinearity in the expression of Hox genes in developing chick skin. Int J Dev Biol. 2002 Mar
CopyrightCopyright © 2007 UBC Press
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204893).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25-30
stage 30
Dermis
Surface Ectoderm
 
31-44
stage 34
stage 44
stage 44
Dermis
Spinal Cord
Surface Ectoderm
Vertebrae
Comparison of several genes

Entry 3

GEISHA IdHOXC8.Hughes.2011Data SourcePublication
Complete cDNA Template Probeshow
GAATTCCGTTGCTGTCGGCTCTACCTACCGACAGATTACAAGAGAAGTCAAGAGCACCGGGAACGCACCGTGCGGGCAC
CAGAGGCACCATGCAACGCCTTTGAGATCGCCTTTGAAATATATATATTAATAATAATTTTATAATAATAATAAAAAAG
CCACCTTTTTTATATCTATATATATCTATCTCTCTATTTTAAAAAAAAAAAAAAGACAACAACAACAACAACAAAATAA
ATAAATAAATAAATAATAAAAAAAAGCCGGACTGGTAAACAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAACAGTCCGG
GACCGTCAGCACTCATCCAGAATTAAAGCCGTCTTTTTAATTGTTTTTAATTGTTTTTTTTTTTAATTATTTTTTTCAA
TTTTTAATTTTTTTTCAATTTTTATATATATATATGGTTTTTTTTTTTGCATGCGAGGGTCATGAGTTCCTACTTTGTA
AATCCTCTCTTTTCCAAGTACAAAGGCGGCGAATCGCTGGAACCAACTTACTACGACTGCAGATTTCCACAAAGTGTTA
GCAGGAGCCATGCTCTCGTGTATGGTCCGGGCACCACTGCTCCCACCTTCCAGCACCCATCACACCACGTCCAAGAGTT
TTTCCACCACGGAACCTCCAGCATCTCCAACTCTGGATACCAGCAAAACCCGTGCGCCTTGGCGTGTCACGGAGACGCT
TCTAAATTCTATGGATATGAAGCTCTGCCGAGGCAATCGCTTTATGGTGCTCAGCAAGAGACGACTGTTGTACAATATC
CTGACTGTAAATCGTCTTCCAACAGTAACTCTAGCGAGGGACAAGGGCATTTAAATCAAAATTCGTCTCCCAGTCTCAT
GTTCCCATGGATGAGACCTCACGCTCCCGGAAGACGCAGTGGCAGACAAACTTACAGCCGGTACCAGACCCTGGAGTTA
GAAAAGGAGTTCCTCTTCAACCCGTATTTGACACGGAAGCGACGGATTGAGGTCTCTCACGCCCTGGGACTGACCGAGA
GACAAGTGAAGATCTGGTTCCAGAACAGGAGGATGAAGTGGAAAAAAGAAAACAACAAAGATAAGCTGCCGGGGGCCAG
AGACGAGGAGAAAACGGAAGAAGAAGGGAATGAGGAAGAGGAAAAAGAAGAGGAGGAAAAAGAAGAAAGCAAGGACTGA
GTTCTCAGCCCTTGAAGTCTCGTTTTATGGCAGATGATAAATCGAGATGTTTACGACGGTCATTTGCTTTTATAGAGTA
TAGAATGGAGAGGCTCACACAGCAGTAACTACCTGTCAAACAGTTGTAGCCTTTTTTATTGTCATAGAAACTTCCCCTA
CTTTTTGCTTCCCCCCCCCCCCCCACTCTTTTTGTTTTGTTTTGTTTTGCTTTGCTTTGCTTTTTAATAGCGGCGTTTT
TAGCTCCATAAATACATAGTTGGCTTCAGTGCAGCGACGGTATAAGCGGATGGG
CitationHughes MW, Wu P, Jiang TX, Lin SJ, Dong CY, Li A, Hsieh FJ, Widelitz RB, Chuong CM. In search of the Golden Fleece: unraveling principles of morphogenesis by studying the integrative biology of skin appendages Integr Biol (Camb). 2011 Apr;3(4):388-407. Epub 2011 Mar 24.
Copyright© Royal Society of Chemistry 2011
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_204893.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25-29
stage 26
stage 26
stage 29
Feathers/Scutae
Surface Ectoderm
epidermis

Entry 4

GEISHA IdHoxc-8.Nelson.1996Data SourcePublication
Complete cDNA Template Probeshow
CTCTACCTACCGACAGATTACAAGAGAAGTCAAGAGCACCGGGAACGCACCGTGCGGGCACGCAGAGGCACCATGCAAC
GCCTTTGAGATCGCCTTTGAAATATATATATTAATATTAATAATAATAATAATAATAAAAAAGCCACCTTTTTATATCT
ATATATATCTATCTCTCTATTTAAAAAAAAAAAAAAAGACAACAACAACAACAACAAAATAAATAAATAAATAAATAAT
AAAAAAAAGCCGGACTGGAAACAGAGAGAGAGAGAGAGAGAGGGAGAGAGGAAAACAGTCCGGGACCGTCAGCACTCAT
CCAGAATTAAAGCCGTCTTTTTAATTGTTTTTTTTTTTTAATTATTTTTTTTTCAATTTTTTAAATTTTTTTTTTCAAT
TTTTTTATTATTATTATTATTATTGTTTTTTTTTTTTTTTTTGCATGCGAGGGTCATGAGTTCCTACTTTGTAAATCCT
CTCTTTTCCAAGTACAAAGGCGGCGAATCGCTGGAACCAACTTACTACGACTGCAGATTTCCACAAAGTGTTAGCAGGA
GCCATGCTCTCGTGTATGGTCCGGGCACCACTGCTCCCACCTTCCAGCACCCATCACACCACGTCCAAGAGTTTTTCCA
CCACGGAACCTCCAGCATCTCCAACTCTGGATACCAGCAAAACCCGTGCGCCTTGGCGTGTCACGGAGACGCTTCTAAA
TTCTATGGATATGAAGCTCTGCCGAGGCAATCGCTTTATGGTGCTCAGCAAGAGACGACTGTTGTACAATATCCTGACT
GTAAATCGTCTTCCAACAGTAACTCTAGCGAGGGACAAGGGCATTTAAATCAAAATTCGTCTCCCAGTCTCATGTTCCC
ATGGATGAGACCTCACGCTCCCGGAAGACGCAGTGGCAGACAAACTTACAGCCGGTACCAGACCCTGGAGTTAGAAAAG
GAGTTCCTCTTCAACCCGTATTTGACACGGAAGCGACGGATTGAGGTCTCTCACGCCCTGGGACTGACCGAGAGACAAG
TGAAGATCTGGTTCCAGAACAGGAGGATGAAGTGGAAAAAAGAAAACAACAAAGATAAGCTGCCGGGGGCCAGAGACGA
GGAGAAAACGGAAGAAGAAGGGAATGAGGAAGAGGAAAAAGAAGAGGAGGAAAAAGAAGAAAGCAAGGACTGAGTTCTC
AGCCCCTTGAAGTCTCGTTTTATGGCAGATGATAAATCGAGATGTTTACGACGGTCATTTGCTTTTATAGAGTATAGAA
TGGAGAGGCTCACACAGCAGTAACTACCTGTCAAACAGTTGTAGCCTTTTTTATTGTCATAGAAACTTCCCCTACTTTT
TGCTCCCCCCCCCCCCCACTCTTTTTGTTTTGTTTTGTTTTGCTTTGCTTTGCTTTTTAATAGCGGCGTTTTTAGCTCC
ATAAATACATAGTTGGCTTCAGTGCAGCGACGGTATAAGCGGATGGGGGGGGGGGAACGGTGCAGCAAAACCCGAATCC
CCCCCCCCTCCCGTCCAAAGGCCGCAGCGCGTCCCCGGCTGCACAAAATGTATTTATTTGAACAGCTTTGACTTTGCCT
TTTTCCGCTTGGTTTTGCCTCTCGCGAATGACCCCGAGGGAAGCGCGGGGGTGTCGGTGCTGCGGCCGTCTATGGGGGC
CGATGGCCGTTCCTAAAAGCCGTTGATCACTCATTGAAGGCGAGATAAGTGGGGGCTCGGAGCCCACCTGGCAGCGCCC
GCACCTCCTCCCCATTGCGTTCCCATTGGGTTCCCATTGAGTACCCATAGTGTTCCTATTGGGTTCCCGATGTGCTCCC
ACTGGGTTCCCATTGCGTTCCCATTGGGTTCCCATCGCGTTCCCGCTGTGTTCCCACTGGGTTCCCATCGTGTTCCCAC
TGGGTTCCCATTGCGTACCCATAGCGTTCCTATTGTGTTCCCATTGGGTTCCCATTGGGTTCCCATAGCGTTCCCATTG
TGTTCCCATTGGGTTCCCATAGGGCTGAGTGTAGAAAATGCCTATATTTTTTTTCTGCTTGGGACTCAATAGGCCGAAA
TTCGCCCCC
CitationNelson CE, Morgan BA, Burke AC, Laufer E, DiMambro E, Murtaugh LC, Gonzales E, Tessarollo L, Parada LF, Tabin C. Analysis of Hox gene expression in the chick limb bud. Development. 1996 May;122(5):1449-66.
CopyrightCopyright © 1996 by Company of Biologists
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI ( NM_204893).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
19-24
stage 23
stage 23
stage 23
stage 23
stage 23
Leg
Neural Plate/Tube
Wing
 
25-30
stage 25
stage 25
Leg
Wing
 
31-44
stage 44
stage 44
  
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.413

Mouse

Emage
Eurexpress
MGI GXD

Frog

Xenbase

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFIN
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