GEISHA - A Chicken Embryo Gene Expression Database
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LHX2
LIM homeobox 2

Gene
Official SymbolLHX2
Official Full NameLIM homeobox 2
CGNC ID762
also known asLH-2A, LIM/homeobox protein Lhx2|LIM homeodomain
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_204889
PolypeptideNP_990220
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.411
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly35509FBgn0000099
Human9355ENSG00000106689MIM:603759
Mouse16870ENSMUSG00000000247All phenotypic alleles (8):Targeted, knock-out(3) Targeted, other(5) MGI:96785
Xenopus100486746, 378634, 378635490330
Zebrafish791744, 795283ENSDARG00000031222ZDB-GENE-051220-1, ZDB-GENE-091118-109ZFIN:ZDB-GENE-051220-1, ZFIN:ZDB-GENE-091118-109
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene395705
Ensembl Gene
KEGGgga:395705

Entry 1

GEISHA IdChEST914i19Data SourceGEISHA ISH Analysis
Forward cDNA Template Probeshow
GCCCGAGGAGAGACGGGGCGGCCGTGCTAGATGCATGGGGGAGGGCTCCGCTTAATGCAAGTTCTGGGCTCCTGCAGGG
ACCCCGACAACTGTCAGCAGCAGCAACAACTCGGGGCCTCCTCCTCGTCTTCCTCAGCGATGCTTTTCCACAGCCTGTC
CGGCTCGGAGATGCACGGTGTCATCGACGAGATGGATCGGAGAACCAAAACCGAAGCAGCGGCCATCAGCTCGGCTATA
GACAGGGGAGAGACCGAAACGCAGACCATGCCTTCCATCAGCAGTGACCGGGCTGCCTTGTGCGCCGGCTGCGGGGGAA
AAATCTCCGACCGTTATTACCTCCTGGCTGTGGACAAACAGTGGCACATGCGCTGCCTGAAGTGCTGTGAACTGTAAAC
TCAACCTGGAGTCCGAGCTCACCTGCTTCAGCAAGGACGGCAGCATTTACTGCAAGGAAAATTACTACAGGAGATTTTC
GGTGCAGAGATGTGCGAGATGTCACCTGGGGATTTCTGCCTCTGAAATGGTCATGAGGGCCAGGGATTTGGTATATCAC
CTTAAATTGCTTCACTTGCACCACTTGCAACAAGATGCTGACCACCGGCGACCACTTCGGCATGAAGGACAATCTGGTG
TATTGCCGCCTCCATTTCGAGACTCTCATCCAAGGGGAGTACCAGGTGCATTTCAATCACTCGGATGTAGCTGCTGGGA
AGGGCCCAGCGTTGAGGTGCGGGCTCTGCTAATACTTTGGGACTGCCTTATTATAACGGGCGTGGGACCTGTACAGAAC
GGGGAGAAGCCAGCGGACAACAGGAACGAGGCCAGGGCCTGGGGCAAGATCTGGCAGGCTACAACGCAGCTATAAGGCT
GCCATGAAAACGATGGTGACCACTGGATAGAGACCAGAATACCCCAGCATCAACAACCAAT
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
Unlabeled
 
7-12
stage 10
stage 11
stage 12
stage 12
Forebrain
Proepicardium
 
13-18
stage 13
stage 14
stage 15
stage 16
stage 16
stage 17
stage 17
Eye
Face Mesenchyme
Forebrain
Leg
Leg Mesenchyme
Liver
Pharyngeal Arches and Clefts
Proepicardium
Retina
Sinus Venosus
Wing
Wing Mesenchyme
 
19-20
stage 20
Forebrain
Leg Mesenchyme
Liver
Pharyngeal Arches and Clefts
Retina
Wing Mesenchyme
 

Entry 2

GEISHA IdLhx2a.vonFrowein.2006Data SourceGEISHA ISH Analysis
Complete cDNA Template Probeshow
AACCTCGGATCAGAGCCTGCGTCCCGCTCCGGAGATCTCTGCCGAGTGGAGAGCCCGGAGCCGATGCTTTTCCACAGCC
TGTCCGGCTCGGAGATGCACGGTGTCATCGACGAGATGGATCGGAGAACCAAAACCGAAGCAGCGGCCATCAGCTCGGC
TATAGACAGGGGAGAGACCGAAACGATTTTAGTAACTCTGTCTTGTAAGGTGATGTGCAAGGAGGGTGTCCGATCATGG
CTTTTAAAACTTCATCAATGTGTTACTTCTAAATGTCATGTTTTTTGTTTTTGTCTTTTTTCAAGGAGCTGCGTCTGTG
CCACTGTGGCTGTTGGTGGGTTGATCGTAATTCACTTGGAGTTTTATAGGAGATTTTCGGTGCAGAGATGTGCGAGATG
TCACCTGGGGATTTCTGCCTCTGAAATGGTCATGAGGGCCAGGGATTTGGTATATCACTTAAATTGCTTCACTTGCACC
ACTTGCAACAAGATGCTGACCACCGGCGACCACTTCGGCATGAAGGACAATCTGGTGTATTGCCGCCTCCATTTCGAGA
CTCTCATCCAAGGGGAGTACCAGGTGCATTTCAATCACTCGGATGTAGCTGCTGGGAAGGGCCCAGCGTTGGGTGCGGG
CTCTGCTAATACTTTGGGACTGCCTTATTATAACGGCGTGGGGACTGTCCAGAAGGGGAGACCCAGGAAAAGGAAGAGC
CCAGGGCCTGGGGCAGATCTGGCAGCCTACAACGCAGCTTTAAGCTGCAATGAAAACGATGGTGACCACCTGGATAGAG
ACCAGCAATACCCCAGCAATCAAAAAACAAAGCGTATGAGGACATCATTCAAACACCACCAGTTGCGGACAATGAAGTC
ATACTTTGCTATTAACCACAATCCTGATGCCAAGGACTTGAAACAGCTAGCTCAGAAAACTGGCCTGACCAAAAGAGTT
CTTCAGGTTTGGTTTCAAAATGCTCGAGCCAAATTCAGACGGAACCTCTTACGTCAAGAAAACACAGGGGTGGATAAGA
CTTCAGATTCAACACTCCAAGCAGGGACCCCATCAGGTCCTGCATCAGAAATATCCAATGCCTCCATGAGTCCATCCAG
CACTCCCACTACTTTAACGGACTTGACTAATCCTACTATGCCTACTGTGACATCTGTCTTGACGTCAGTGCCCGGAAGT
CTTGAGGTCCATGAATCCCGAAGTCCTTCACAGACAACTCTCACAAATCTTTTCTGATGACTCTTTCTTAATAATTTCT
TTAAAAAAGAAATTATTCTTAGTTGAAATTCCAAGTGTATTTTAATAGAGGCTTTGAGCAACTGACTAACCACCATTAG
GATCTCTCCTAAGAAAACAGAAGGAAATGTAGTGTTCTGGTATTACAGAGTATGGACTGAAGAATAACTTGGAAGATCT
ATTGCAACACAACATTTGTGTAACTGTACAGTTTTGTGGACTGAGCAAGGGAAACAGCAATTAATTTAAGTTGGCTAAA
GCTTCTGTATTTTCAAAGACTGCCATGTGCCTTATACACTGTTTTATCTACATACTTT
CommentsAccording to the authors, “Plasmid templates were used to generate digoxygenin antisense riboprobes: Lhx2a (S. Richter). As information provided was insufficient to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_204889).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
25-28
stage 28
Forebrain
 

Entry 3

GEISHA IdLHX2.Abellan.2009Data SourcePublication
Complete cDNA Template Probeshow
CTGGCTGTGGACAAACAGTGGCACATGCGCTGCCTGAAGTGCTGTGAATGTAAACTCAACCTGGAGTCCGAGCTCACCT
GCTTCAGCAAGGACGGCAGCATTTACTGCAAGGAGGATTACTACAGGAGATTTTCGGTGCAGAGATGTGCGAGATGTCA
CCTGGGGATTTCTGCCTCTGAAATGGTCATGAGGGCCAGGGATTTGGTATATCACTTAAATTGCTTCACTTGCACCACT
TGCAACAAGATGCTGACCACCGGCGACCACTTCGGCATGAAGGACAATCTGGTGTATTGCCGCCTCCATTTCGAGACTC
TCATCCAAGGGGAGTACCAGGTGCATTTCAATCACTCGGATGTAGCTGCTGGGAAGGGCCCAGCGTTGGGTGCGGGCTC
TGCTAATACTTTGGGACTGCCTTATTATAACGGCGTGGGGACTGTCCAGAAGGGGAGACCCAGGAAAAGGAAGAGCCCA
GGGCCTGGGGCAGATCTGGCAGCCTACAACGCAGCTTTAAGCTGCAATGAAAACGATGGTGACCACCTGGATAGAGACC
AGCAATACCCCAGCAATCAAAAAACAAAGCGTATGAGGACATCATTCAAACACCACCAGTTGCGGACAATGAAGTCATA
CTTTGCTATTAACCACAATCCTGATGCCAAGGACTTGAAACAGCTAGCTCAGAAAACTGGCCTGACCAAAAGAGTTCTT
CAGGTTTGGTTTCAAAATGCT
CitationAbellán A, Legaz I, Vernier B, Rétaux S, Medina L. Olfactory and amygdalar structures of the chicken ventral pallium based on the combinatorial expression patterns of LIM and other developmental regulatory genes. J Comp Neurol. 2009 Sep 20;516(3):166-86.
CopyrightCopyright © 2009 Wiley-Liss, Inc.
CommentsThe sequence below was obtained from NCBI (acc # NM_204889.1 - Showing 732 bp region from base 208 to 939) using the information provided in the publication.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
31-36
stage 35
stage 35
stage 35
stage 35
stage 35
stage 35
stage 36
Telencephalon
frontal section
horizontal section
sagittal section

Entry 4

GEISHA IdLHX2.RodriguezEsteban.1998Data SourcePublication
Complete cDNA Template Probeshow
TCAGCGATGCTTTTCCACAGCCTGTCCGGCTCGGAGATGCACGGTGTCATCGACGAGATGGATCGGAGAACCAAAACCG
AAGCAGCGGCCATCAGCTCGGCTATAGACAGGGGAGAGACCGAAACGCAGACCATGCCTTCCATCAGCAGTGACCGGGC
TGCCTTGTGCGCCGGCTGCGGGGGAAAAATCTCCGACCGTTATTACCTCCTGGCTGTGGACAAACAGTGGCACATGCGC
TGCCTGAAGTGCTGTGAATGTAAACTCAACCTGGAGTCCGAGCTCACCTGCTTCAGCAAGGACGGCAGCATTTACTGCA
AGGAGGATTACTACAGGAGATTTTCGGTGCAGAGATGTGCGAGATGTCACCTGGGGATTTCTGCCTCTGAAATGGTCAT
GAGGGCCAGGGATTTGGTATATCACTTAAATTGCTTCACTTGCACCACTTGCAACAAGATGCTGACCACCGGCGACCAC
TTCGGCATGAAGGACAATCTGGTGTATTGCCGCCTCCATTTCGAGACTCTCATCCAAGGGGAGTACCAGGTGCATTTCA
ATCACTCGGATGTAGCTGCTGGGAAGGGCCCAGCGTTGGGTGCGGGCTCTGCTAATACTTTGGGACTGCCTTATTATAA
CGGCGTGGGGACTGTCCAGAAGGGGAGACCCAGGAAAAGGAAGAGCCCAGGGCCTGGGGCAGATCTGGCAGCCTACAAC
GCAGCTTTAAGCTGCAATGAAAACGATGGTGACCACCTGGATAGAGACCAGCAATACCCCAGCAATCAAAAAACAAAGC
GTATGAGGACATCATTCAAACACCACCAGTTGCGGACAATGAAGTCATACTTTGCTATTAACCACAATCCTGATGCCAA
GGACTTGAAACAGCTAGCTCAGAAAACTGGCCTGACCAAAAGAGTTCTTCAGGTTTGGTTTCAAAATGCTCGAGCCAAA
TTCAGACGGAACCTCTTACGTCAAGAAAACACAGGGGTGGATAAGACTTCAGATTCAACACTCCAAGCAGGGACCCCAT
CAGGTCCTGCATCAGAAATATCCAATGCCTCCATGAGTCCATCCAGCACTCCCACTACTTTAACGGACTTGACTAATCC
TACTATGCCTACTGTGACATCTGTCTTGACGTCAGTGCCCGGAAGTCTTGAGGTCCATGAATCCCGAAGTCCTTCACAG
ACAACTCTCACAAATCTTTTCTGATGACTCTTCTCCAATAATTTCTTTAAAAAAGAAATTATTCTTAGTTGAAATTCCA
AGTG
CitationRodriguez-Esteban C, Schwabe JW, Peña JD, Rincon-Limas DE, Magallón J, Botas J, Izpisúa Belmonte JC. Lhx2, a vertebrate homologue of apterous, regulates vertebrate limb outgrowth. Development. 1998 Oct;125(20):3925-34.
CopyrightPublished by The Company of Biologists 2007. This material is protected by a copyright retained by the authors.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc # NM_204889.1 ).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 15
stage 16
stage 16
Eye
Forebrain
Head Mesenchyme
Leg Mesenchyme
Limb Buds
Nasal Placode/Nerve
Wing Mesenchyme
 
19-24
stage 21
stage 21
stage 22
stage 23
stage 23
stage 23
Leg Mesenchyme
Limb Buds
Spinal Cord
Wing Mesenchyme
 
25-30
stage 25
Leg Mesenchyme
Wing Mesenchyme
 
31-32
stage 32
stage 32
Leg Mesenchyme
Wing Mesenchyme
 

Entry 5

GEISHA IdLHX2.Anderson.2021Data SourceDirect Submission
Complete cDNA Template Probeshow
CCTGAAGTGTTGTGAATGCAAACTCAACCTGGAGTCCGAGCTCACCTGCTTCAGCAAGGACGGCAGCATTTACTGCAAG
GAGGATTACTACAGGAGATTTTCGGTGCAGAGATGTGCGAGATGTCACCTGGGGATTTCTGCCTCTGAAATGGTCATGA
GGGCCAGGGATTTGGTATATCACTTAAATTGCTTCACTTGCACCACTTGCAACAAGATGCTGACCACCGGCGACCACTT
CGGCATGAAGGACAATCTGGTGTATTGCCGCCTCCATTTCGAGACTCTCATCCAAGGGGAGTACCAGGTGCATTTCAAT
CACTCGGATGTAGCTGCTGGGAAGGGCCCAGCGTTGGGTGCGGGCTCTGCTAATACTTTGGGACTGCCTTATTATAACG
GCGTGGGGACTGTCCAGAAGGGGAGACCCAGGAAAAGGAAGAGCCCAGGGCCTGGGGCAGATCTGGCAGCCTACAACGC
AGCTTTAAGCTGCAATGAAAACGATGGTGACCACCTGGATAGAGACCAGCAATACCCCAGCAATCAAAAAACAAAGCGT
ATGAGGACATCATTCAAACACCACCAGTTGCGGACAATGAAGTCATACTTTGCTATTAACCACAATCCTGATGCCAAGG
ACTTGAAACAGCTAGCTCAGAAAACTGGCCTGACCAAAAGAGTTCTTCAGGTCTGGTCCAAAA
CommentsImages and probe sequence provided by Claire Anderson. The probe was supplied by Tsutomu Nohnoa. Related paper: Anderson C, Hill B, Lu HC, Moverley A, Yang Y, Oliveira NMM, Baldock RA, Stern CD. A 3D molecular atlas of the chick embryonic heart. Dev Biol. 2019 Dec 1;456(1):40-46. doi: 10.1016/j.ydbio.2019.07.003. Epub 2019 Jul 5.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 8
stage 9
stage 10
stage 11
stage 11
stage 12
stage 12
stage 12
stage 12
stage 12
Anterior Intestinal Portal
Blood Islands
Eye
Forebrain
Head Mesenchyme
Intermediate Mesoderm
Lateral Plate Mesoderm
Neural Plate/Tube
Notochord
Pharynx
Primitive Streak
Proepicardium
Sinus Venosus
Somites
HH11+
HH11-
HH12+
section 18
section 22
section 7

Entry 6

GEISHA IdLHX2.Anderson.2019Data SourcePublication
Complete cDNA Template Probeshow
TCAGCGATGCTTTTCCACAGCCTGTCCGGCTCGGAGATGCACGGTGTCATCGACGAGATGGATCGGAGAACCAAAACCG
AAGCAGCGGCCATCAGCTCGGCTATAGACAGGGGAGAGACCGAAACGCAGACCATGCCTTCCATCAGCAGTGACCGGGC
TGCCTTGTGCGCCGGCTGCGGGGGAAAAATCTCCGACCGTTATTACCTCCTGGCTGTGGACAAACAGTGGCACATGCGC
TGCCTGAAGTGCTGTGAATGTAAACTCAACCTGGAGTCCGAGCTCACCTGCTTCAGCAAGGACGGCAGCATTTACTGCA
AGGAGGATTACTACAGGAGATTTTCGGTGCAGAGATGTGCGAGATGTCACCTGGGGATTTCTGCCTCTGAAATGGTCAT
GAGGGCCAGGGATTTGGTATATCACTTAAATTGCTTCACTTGCACCACTTGCAACAAGATGCTGACCACCGGCGACCAC
TTCGGCATGAAGGACAATCTGGTGTATTGCCGCCTCCATTTCGAGACTCTCATCCAAGGGGAGTACCAGGTGCATTTCA
ATCACTCGGATGTAGCTGCTGGGAAGGGCCCAGCGTTGGGTGCGGGCTCTGCTAATACTTTGGGACTGCCTTATTATAA
CGGCGTGGGGACTGTCCAGAAGGGGAGACCCAGGAAAAGGAAGAGCCCAGGGCCTGGGGCAGATCTGGCAGCCTACAAC
GCAGCTTTAAGCTGCAATGAAAACGATGGTGACCACCTGGATAGAGACCAGCAATACCCCAGCAATCAAAAAACAAAGC
GTATGAGGACATCATTCAAACACCACCAGTTGCGGACAATGAAGTCATACTTTGCTATTAACCACAATCCTGATGCCAA
GGACTTGAAACAGCTAGCTCAGAAAACTGGCCTGACCAAAAGAGTTCTTCAGGTTTGGTTTCAAAATGCTCGAGCCAAA
TTCAGACGGAACCTCTTACGTCAAGAAAACACAGGGGTGGATAAGACTTCAGATTCAACACTCCAAGCAGGGACCCCAT
CAGGTCCTGCATCAGAAATATCCAATGCCTCCATGAGTCCATCCAGCACTCCCACTACTTTAACGGACTTGACTAATCC
TACTATGCCTACTGTGACATCTGTCTTGACGTCAGTGCCCGGAAGTCTTGAGGTCCATGAATCCCGAAGTCCTTCACAG
ACAACTCTCACAAATCTTTTCTGATGACTCTTCTCCAATAATTTCTTTAAAAAAGAAATTATTCTTAGTTGAAATTCCA
AGTG
CitationAnderson C, Hill B, Lu HC, Moverley A, Yang Y, Oliveira NMM, Baldock RA, Stern CD. A 3D molecular atlas of the chick embryonic heart. Dev Biol. 2019 Dec 1;456(1):40-46. doi: 10.1016/j.ydbio.2019.07.003. Epub 2019 Jul 5.
CopyrightCopyright © 2019 Elsevier Inc. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI ( NM_204889).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 12
Proepicardium
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.411

Mouse

EmageMGI:96785
EurexpressMGI:96785
MGI GXDMGI:96785

Frog

Xenbase490330

Fruit Fly

BDGPFBgn0000099

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-051220-1, ZDB-GENE-091118-109
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