GEISHA - A Chicken Embryo Gene Expression Database
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HMX3
H6 family homeobox 3

Gene
Official SymbolHMX3
Official Full NameH6 family homeobox 3
CGNC ID16346
also known asNKX5-1, homeobox protein HMX3|NK homeobox|cNkx5-1|homeo box (H6 family) 3|homeobox (H6 family) 3|homeobox protein H6 family member 3|homeobox protein Nkx-5.1
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_001007985
PolypeptideNP_001007986
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.22889
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human340784ENSG00000188620MIM:613380
Mouse15373ENSMUSG00000040148All phenotypic alleles (6):Targeted, knock-out(4) Targeted, other(2) MGI:107160
Xenopus780290, 373845483775
Zebrafish60310ENSDARG00000070955ZDB-GENE-001020-1ZFIN:ZDB-GENE-001020-1
Gene Ontology
Molecular Functionsequence-specific DNA binding, sequence-specific DNA binding transcription factor activity
Biological Processcell differentiation, nervous system development, transcription, DNA-templated
Cellular Componentnucleus
Links to other databases
Entrez Gene429199
Ensembl GeneENSGALG00000023415
KEGGgga:429199

Entry 1

GEISHA IdcNkx5-1.Adamska.2001Data SourcePublication
Complete cDNA Template Probeshow
CCCCCCCCCCGCCGCGCTTTTCCCCGGCGCCGCCGGGAGCCGCCAACCCGCGGCGGGCAGGAAGCGGGCGGGCAGCGGA
GGATGCCGGAGACCGGGCAGGAGCCGCCCAGCGCCCCGCCGCCGCCGCCCCCTCCCAAGGAGTCCTTCTACATCAAGAA
CCTGCTCAACGGAGACCCCCCCAAAGCGGCCCCCAAGCAGCCGAGGGCTCTGTTCGCCCCTTCGGGCAAAGCGGACGGC
TCCGGCTTCGCCCTCTCGCAGGTGGGAGATCTCTCCTTTCCCCGCTTCGAGATCCCGGCGCCGCGCTTCGCTCTGAGCG
CGCACTGCCTGGAGCGAGCCCAGACCTGGTGGTACCCCTACGCGCTGACGCCGGCCGGAGCCCACCTGCCCCGCACCGA
AGGTACCGCTCCCTCCGACCCTCCGTCCCTCCTTCCTTCCATCCGTCCCTCCGTCCTCCCATCCGTCCCCTCCATCTGT
CCATCCCCGACGGACGGGGGTGGCACCGCGGGCGGCGGCGGCGGCCGTTCGGGGGGCAGCGCAGGGCCTGAAGGTGTCT
CTTTGTGTCCCTCTGTCCCCGTTCAGCCGCGGAGAAATCCCTCCTGCGGGACTCGTCCCCCGCGTCGGGCACCGACAGG
GACTCCCCGGAGCCGCTGCTCCAGGGGGGGGACGCGGAACAGAAGGAGCGGGACCCCAAGAGCCCCGCCGAGATCGTGC
TGGAGGAGAGCGACTCGGAGGAGGGGAAGAAGGAGGGCGGCGCGGAGGACTGGAAGAAGCGGGAGGAGAGCCCCGAGAA
GAAGCCGTGCCGCAAGAAGAAGACGCGCACGGTGTTCAGCCGCAGCCAGGTCTTCCAGCTCGAGTCCACCTTCGACATG
AAGCGCTACCTGAGCAGCTCGGAGCGGGCCGGCCTGGCCGCTTCGCTGCACCTCACAGAGACCCAGGTGAAGATCTGGT
TCCAGAACCGCCGCAACAAGTGGAAGCGGCAGCTGGCGGCCGAGCTGGAGGCGGCCAACCTCAGCCACGCGGCCGCGCA
GCGCATCGTGCGCGTCCCCATCCTCTACCACGAGAACTCGGGCGCGGAGAGCAGCGCGGCGGGAGGCGGCGGCCCCGGC
CCGCAGCCTCTGCTCACCTTCCCCCACCCCGTTTATTACTCCCACCCCAGTGTCACCTCCGTACCGCTCCTGCGGCCCG
TCTGA
CitationAdamska M, Herbrand H, Adamski M, Krüger M, Braun T, Bober E. FGFs control the patterning of the inner ear but are not able to induce the full ear program. Mech Dev. 2001 Dec;109(2):303-13.
CopyrightCopyright © 2001 Elsevier Science Ireland Ltd.
CommentsThe complete cDNA template sequence was obtained from the information from the publication as described in Adamska et al. 2001. Nkx5-1 is also known as HMX3 in NCBI.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 10
Ear/Otic Placode
 
31-44
stage 44
  

Entry 2

GEISHA IdNkx5.1.Freter.2012Data SourcePublication
Complete cDNA Template Probeshow
ATGCCGGAGACCGGGCAGGAGCCGCCCAGCGCCCCGCCGCCGCCGCCCCCTCCCAAGGAGTCCTTCTACATCAAGAACC
TGCTCAACGGAGACCCCCCCAAAGCGGCCCCCAAGCAGCCGAGGGCTCTGTTCGCCCCTTCGGGCAAAGCGGACGGCTC
CGGCTTCGCCCTCTCGCAGGTGGGAGATCTCTCCTTTCCCCGCTTCGAGATCCCGGCGCCGCGCTTCGCTCTGAGCGCG
CACTGCCTGGAGCGAGCCCAGACCTGGTGGTACCCCTACGCGCTGACGCCGGCCGGAGCCCACCTGCCCCGCACCGAAG
CCGCGGAGAAATCCCTCCTGCGGGACTCGTCCCCCGCGTCGGGCACCGACAGGGACTCCCCGGAGCCGCTGCTCCAGGG
GGGGGACGCGGAACAGAAGGAGCGGGACCCCAAGAGCCCCGCCGAGATCGTGCTGGAGGAGAGCGACTCGGAGGAGGGG
AAGAAGGAGGGCGGCGCGGAGGACTGGAAGAAGCGGGAGGAGAGCCCCGAGAAGAAGCCGTGCCGCAAGAAGAAGACGC
GCACGGTGTTCAGCCGCAGCCAGGTCTTCCAGCTCGAGTCCACCTTCGACATGAAGCGCTACCTGAGCAGCTCGGAGCG
GGCCGGCCTGGCCGCTTCGCTGCACCTCACAGAGACCCAGGTGAAGATCTGGTTCCAGAACCGCCGCAACAAGTGGAAG
CGGCAGCTGGCGGCCGAGCTGGAGGCGGCCAACCTCAGCCACGCGGCCGCGCAGCGCATCGTGCGCGTCCCCATCCTCT
ACCACGAGAACTCGGGCGCGGAGAGCAGCGCGGCGGGAGGCGGCGGCCCCGGCCCGCAGCCTCTGCTCACCTTCCCCCA
CCCCGTTTATTACTCCCACCCCAGTGTCACCTCCGTACCGCTCCTGCGGCCCGTCTGA
CitationFreter S, Muta Y, O'Neill P, Vassilev VS, Kuraku S, Ladher RK. Pax2 modulates proliferation during specification of the otic and epibranchial placodes. Dev Dyn. 2012 Nov;241(11):1716-28
CopyrightCopyright © 2012 Wiley Periodicals, Inc.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence was obtained from NCBI (NM_001007985.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-14
stage 14
stage 14
stage 14
Ear/Otic Placode
control = left side of embryo
cross section of figure 4A.
stage 13/14, 16 to 22 somites
all
 
 
  
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.22889

Mouse

EmageMGI:107160
EurexpressMGI:107160
MGI GXDMGI:107160

Frog

Xenbase483775

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-001020-1
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