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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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MMP13
matrix metallopeptidase 13

Gene

Official Symbol	MMP13
Official Full Name	matrix metallopeptidase 13
CGNC ID	49430
also known as	MMP-13, collagenase 3\|matrix metallopeptidase 13 (collagenase 3)\|matrix metalloproteinase-13
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	XM_003640587
Polypeptide	XP_003640635
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.398

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human
Mouse
Xenopus
Zebrafish

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	395683
Ensembl Gene
KEGG	gga:395683

Entry 1

GEISHA Id	MMP13.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	CAAAACGCCAGAGAAATGTG
Reverse cDNA Template Primer	ATTAACCCTCACTAAAGGACACTTCAGGGAGTATCAGC	cDNA Template Length	966
Forward cDNA Template Probe	show AATCTACACAGTTCTAAGAAGATGCTAGATTGCTGGGACTTAGTCATGCTTATGATCATGAAGAATCTCCTCACTTTAA TGCTAGACAAACTTTAAATGGTGTAATGCCCCTTAAAATGAGTATCATTTCCTTCCTGTTTTCCTATTAATTTAATGCA GTTCCAGACTGACATACATTTGTATAGTTCCATATATACAGTATATAAGTAAATGTTTGATTGTAGGTAGTCAGTGCTT GTTCGCAGAACTCTGCTTTCCTCTAATAAACTTGTATGCCCAAATTATTATTTCCATGTACTAAAAGCTGCTCTGCAGT TTGTAACATGGCATTCATCTATACTTAGCACCAAAATAAGGAGTTAGTATGCAGGATGCGGACAATTCTTTTGCTCCAG ATGCTGTATTCAAACTGCAACGGTCCATTGAAGAAGTAGAGGTAACCATTTCTATGGTAGACTGCATCCACTCTATCAC CAATTCCTGCAAATTCATCTTCTATGAACTTGGGGTAGCCTGTGTCCATAACTTCTGTCTCTTCATCATAACTCCAGTA CTTATTCCCTGTAAAAAAGAGAGTCTTGCCAGTATCATCAATATGGACCACTGCATCTATTTTTTTCATTTCTTTTGGG AATCCCATTTCATATATCTTTTTAGGAAAGCCTTCAACTATGTCATAGCCATTCATAGCCCAAACCTTCTTTCCTTTAA ACATGAAGACAAGATCTTTAATGGGATTTTCATAAGCTGCATCTATTTTGTTTGGAAGCTCCGGCCAAAAGGATTTAAT TAAAACAAGTTCTGCTTCAACCATCTGCGGGTGCAGTCGCCAGAAAAACCTGTCCTTGAAGACCAGCATTTCTCCACGA AGTTTTGTTATGGCATCAATCGATAAATCTGCAGCACATTTC

Stage

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Location (click to highlight)

Comments (click to highlight)

7-12

stage 11

stage 12

Heart

13-18

stage 15

Forebrain
Hindbrain
Midbrain
Sclerotome

stage 25

Widespread Expression

faint

Entry 2

GEISHA Id	Mmp13.Shelton.2007	Data Source	Publication
Complete cDNA Template Probe	show CCGAGGTGTGGCGTCCCAGATGTGGGGGAATATAAATTTTTCCCTCGAAAACTCAAATGGTCAAACACTAATTTAACGT ACAGAATTATGAGTTACACATCAGATCTGAGACGTGCTGAAGTAGAGAGAGCTTTCAAAAGAGCATTCAAGGTTTGGTC TGATGTGACACCCCTTAACTTCACCAGAATACGAAGTGGTACTGCTGATATCATGATCTCCTTTGGCACTAAAGAACAT GGTGACTTTTACCCCTTTGATGGACCCTCTGGATTACTGGCTCATGCCTTCCCTCCTGGTCCAGACTATGGAGGAGATG CCCATTTTGATGATGATGAAACTTGGTCAGATGATTCTAGAGGGTATAACTTGTTTCTTGTTGCTGCTCATGAATTTGG CCATTCACTGGGACTGGAACACTCCAGAGACCCTGGAGCACTGATGTTCCCAATTTACACATATACTGGAAAATCTGGT TTTGTGCTTCCTGATGATGATGTGCAAGGGATCCAAGAGCTCTATGGTGCTGGAGACAGAGATCCCAACCCAAAACATC CCAAAACGCCAGAGAAATGTGCTGCAGATTTATCGATTGATGCCATAACAAAACTTCGTGGAGAAATGCTGGTCTTCAA GGACAGGTTTTTCTGGCGACTGCACCCGCAGATGGTTGAAGCAGAACTTGTTTTAATTAAATCCTTTTGGCCGGAGCTT CCAAACAAAATAGATGCAGCTTATGAAAATCCCATTAAAGATCTTGTCTTCATGTTTAAAGGAAAGAAGGTTTGGGCTA TGAATGGCTATGACATAGTTGAAGGCTTTCCTAAAAAGATATATGAAATGGGATTCCCAAAAGAAATGAAAAAAATAGA TGCAGTGGTCCATATTGATGATACTGGCAAGACTCTCTTTTTTACAGGGAATAAGTACTGGAGTTATGATGAAGAGACA GAAGTTATGGACACAGGCTACCCCAAGTTCATAGAAGATGAATTTGCAGGAATTGGTGATAGAGTGGATGCAGTCTACC ATAGAAATGGTTACCTCTACTTCTTCAATGGACCGTTGCAGTTTGAATACAGCATCTGGAGCAAAAGAATTGTCCGCAT CCTGCATACTAACTCCTTATTTTGGTGCTAAGTATAGATGAATGCCATGTTACAAACTGCAGAGCAGCTTTTAGTACAT GGAAATAATAATTTGGGCATACAAGTTTATTAGAGGAAAGCAGAGTTCTGCGAACAAGCACTGACTACCTACAATCAAA CATTTACTTATATACTGTATATATGGAACTATACAAATGTATGTCAGTCTGGAACTGCATTAAATTAATAGGAAAACAG GAAGGAAATGATACTCATTTTAAGGGGCATTACACCATTTAAAGTTTGTCTAGCATTAAAGTGAGGAGATTCTTCATGA TCATAAGCATGACTAAGTCCCAGCAATCTAGCATCTTCTTAGAACTTGGGGTAGCCTGTGTCCAT
Citation	Shelton EL, Yutzey KE. Tbx20 regulation of endocardial cushion cell proliferation and extrcellular matrix gene epression. Dev Biol. 2007 Feb 1;302(1):267-80.
Copyright	Reprinted with permission from Elsevier. Copyright © 2007 Elsevier B.V. All rights reserved.
Comments	The chicken mmp13 sequence (GenBank accession number AF070478) was amplified from HH stage 30 cardiac outflow tract cDNA using the primers 5′-TGATGCCATAACAAAACTTCGTG-3′ and 5′-AGATGCTAGATTGCTGGGACTTA-3′