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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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PDLIM4
PDZ and LIM domain 4

The human orthologue of this gene is associated
with the following human disease:

{Osteoporosis, susceptibility to}

Gene

Official Symbol	PDLIM4
Official Full Name	PDZ and LIM domain 4
CGNC ID	5048
also known as	RIL, PDZ and LIM domain protein 4\|LIM protein RIL\|reversion-induced LIM protein, PDZ and LIM domain protein 4, LIM protein RIL, Reversion-induced LIM protein
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_204839
Polypeptide	NP_990170
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.7467

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	8572	ENSG00000131435	MIM:166710	MIM:603422
Mouse	30794	ENSMUSG00000020388	All phenotypic alleles (3):Targeted, other(3)	MGI:1353470
Xenopus	394862, 446969			1001789
Zebrafish	569404	ENSDARG00000068973	ZDB-GENE-070308-5	ZFIN:ZDB-GENE-070308-5

Gene Ontology

Molecular Function	zinc ion binding
Biological Process
Cellular Component

Links to other databases

Entrez Gene	395643
Ensembl Gene
KEGG	gga:395643

Entry 1

GEISHA Id	pgn1c.pk018.f9	Data Source	GEISHA ISH Analysis
Forward cDNA Template Probe	show `AGCGGAGCGCAGCGCTGGGCACGGAGCCCCAACCCCGCTATGCCGCACTCGGTGGCCCTGCGCGGCCCCTCGCCGTGGG GTTTCCGCCTGGTGGGCGGTAAGGACTTCAGCACGCCGCTGACCATCTCCAGGATTAACCCTGGAAGTAAAGCAGCCCT GGCCAACCTGTGCCCAGGAGACATCATTCTGGCCATTA`

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 5

stage 6

Hensen's Node
Neural Plate/Tube

node asymmetry

7-12

stage 8

stage 9

stage 10

stage 12

Anterior Intestinal Portal
Ear/Otic Placcode
Head Mesenchyme
Neural Plate/Tube
Notochord
Primitive Streak
Somites

13-18

stage 14

stage 16

stage 17

stage 18

Diencephalon
Ear/Otic Placcode
Eye
Foregut
Lens
Myotome
Nasal Placcode/Nerve
Paraxial Mesoderm
Pharyngeal Arches and Clefts
Retina
Sclerotome
Somites
Splanchnic Mesoderm
Stomach
Tail

hand transected

19-23

stage 20

stage 21

stage 22

stage 23

Allantois
Dermomyotome
Diencephalon
Ear/Otic Placcode
Eye
Forebrain
Hindbrain
Lens
Limb Buds
Midbrain
Myotome
Nasal Placcode/Nerve
Paraxial Mesoderm
Pharyngeal Arches and Clefts
Sclerotome
Somites
Spinal Cord
Splanchnic Mesoderm
Tail
Wing
Wing Mesenchyme

Entry 2

GEISHA Id	PDLIM4.Trevers.2023	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show GCGGCTCGAGGCGCTGGGCACGGAGCCCCAACCCCGCTATGCCGCACTCGGTGGCCCTGCGCGGCCCTCGCCGTGGGGT TTCCGCCTGGTGGGCGGTAAGTGACTTCAGCACGCCGCTGACCATCTCCAGGATTAACCCTGGAAGTAAAGCAGCCCTG GCCAACCTGTGCCCAGGAGACATCATTCTTGCCATTAATGGGGAGAGCACAGAAGCCATGACGCACCTGGAGGCTCAGA ACAAGATCAAGGCGTGTGTGGAGCAGCTGCTGCTGTCTGTGAGCAGAGCTGAGGAGAGGAGCTGGTCACCACCCATACT GGAGGATGGGAAGGCACAAGCTTACCGCATCAATATTGAGCCTGAGCCGCAGGATAACGGCCCTGCAGTGGGCAAGAGG CCCATGCCCCACGCTGCAGGTGGGAGCCCAGTGGACAGCAGGCCGGCACTGAGCCTGCAGCACCCCCAGCCCAGCCGGC CGCATGCCAGCAGCAGCGCCGATGCCGCCTTGCCGCTGCAGCTCAGTGGGCTGCACATCTCTCCCTCCCAAAGCACCGA CCCCTTAAAGTCCCTCCCACGGAACAGAAACGGGATCGATGTGGAGTCAGATGTCTACAAGATGCTCCAGGATTACGAG AGGCCTGCCTCAGAGCCCAAGCAGTCGGGGTCCTTCCGCTACCTGCAGGGCAATGCTGGAGGCTGGGGAGAACGGGTGA AAAACTCGACAGACTGAGCAACCCTCGGAGCATCAAACCTGCAGGACCGAAGCTGGGCGCTGCCATGTCCGGCCTGCAG ATGCTCCCCGAGTGCACGAGATGTGGCCATGGGATCGAGGGAACATCGTCAAAGCCCGAGACAA
Comments	The complete cDNA template sequence was obtained from the information from the publication as described in Trevers et al. 2023.