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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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SPON1
spondin 1

Gene

Official Symbol	SPON1
Official Full Name	spondin 1
CGNC ID	9117
also known as	spondin-1, spondin-1\|F-spondin\|spondin 1, extracellular matrix protein, Spondin-1 precursor , F-spondin
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_204851
Polypeptide	NP_990182
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.3330

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly	36333			FBgn0033710
Human	10418	ENSG00000262655		MIM:604989
Mouse	233744	ENSMUSG00000038156	All phenotypic alleles (2):Targeted, other(2)	MGI:2385287
Xenopus	100036727, 378682			991005
Zebrafish	58027	ENSDARG00000010029	ZDB-GENE-000427-9	ZFIN:ZDB-GENE-000427-9

Gene Ontology

Molecular Function
Biological Process	cell adhesion
Cellular Component	proteinaceous extracellular matrix

Links to other databases

Entrez Gene	395657
Ensembl Gene
KEGG	gga:395657

Entry 1

GEISHA Id	SPON1.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	CAGGTATGGAAAAGAGGCGTTG
Reverse cDNA Template Primer	ATTAACCCTCACTAAAGGTGTGACTGTGTTATGGGCTGACATC	cDNA Template Length	897
Forward cDNA Template Probe	show TATTGAGCTGCCNGATTATTTAAGTAAGTTGCTATTTGAGAAACAAAGATGGATTTTGCATGGAACGCAGCATCCATGT GAACAAAAGTATGTAGGGTAATTATTTCAACTATCGCTTAACCCAATATTGTAAAAAGATAAACATGCACCTTTAATAT TATTGAACCAGCATTACTGAAATTTCTCCTTGGCATAGTTGTATAATCACATAGGCACTGCTTTGGATTTTTAAAATCA AATCAAGAGAGAAATCCTCCCACATATGAAACATGTCACTTCAAATTAGTTATGTTAATATGCATGCATCCCATGTCTT TACAAGTAGTATTTCTATATGGCTATTCCATGTCCACAGATATGTCTGTACTTCAGTTAAATGACTCACAATGACCTAC TATTTTTATGCAGTAAGGGCTAGCTGGAGCATCAAAGATTTACTCTCAGCATTAATCTGTGAGGAAATATTTATAAAAT ATATTTCTTGCACCAGCAAGACTAAAAAGCAAACCACACTGCAAAAATGAAAACTAATATACACTTTATACTTTTGTTT GTTTTAAAAACCAAACCAAGGTTGACTTTCCTTTTATAGCTCAGAGTGCATCACTTGGAAGCCTTGTGTTTTCCTAACA AGGATGAACGTTACATGCTCTTAGCTCCTTTTTGTCTTTGCAGCTAGTAAACTGAGTGCTTTTGGACCTCTTCTTTACC ATCATGTAGCGCTCCTGAATTCCACCTCCACAGAGTGTAGAACATTCTGTCCAAGCAGTCCATGGTTTCAGCCTACAAA CTGGATATTGCTCATTATCAATATTTTTTTTTGCTTGGTTCACTTCTTCTTTTCTCCCGGGCCTCCTTCCAACGCCTCT TTT

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

stage 6

Early Endoderm
Ectoderm
Epiblast
Headfold
Neural Plate/Tube
Primitive Streak

7-12

stage 7

stage 8

stage 9

stage 10

stage 12

Ectoderm
Forebrain
Head Process
Hindbrain
Midbrain
Neural Plate/Tube
Notochord
Paraxial Mesoderm
Somites

13-18

stage 13

stage 14

stage 17

Diencephalon
Ear/Otic Placode
Eye
Forebrain
Foregut
Heart
Hindbrain
Mesencephalon
Midbrain
Notochord
Oral Pharynx
Pharyngeal Arches and Clefts
Proepicardium
Sclerotome
Somites
Spinal Cord

19-24

stage 21

stage 24

Allantois
Cranial PNS
Eye
Heart
Hindbrain
Lens
Mesonephros
Midbrain
Notochord
Pharyngeal Arches and Clefts
Proepicardium
Sclerotome
Spinal Cord
Spinal Ganglia and Nerves
Tail
Wing Mesenchyme

25-27

stage 27

Cardinal Veins
Cranial PNS
Eye
Foregut
Heart
Leg Mesenchyme
Lung
Mesonephros
Proepicardium
Sclerotome
Spinal Cord
Spinal Ganglia and Nerves
Wing Mesenchyme

Entry 2

GEISHA Id	O46	Data Source	GEISHA ISH Analysis
Forward cDNA Template Probe	show `TTCTCTCACCAAAAGAATCTGTGAACAAGATTCAGCCTCTGAAGGTGTGACTGACAAACCAATATTAGATTGCTGTGCC TGTGGAACTGCCAAATACAGGCTAACGTTTTATGGAAATTGGTCGGAAAAAACACATCCCAAAGACTTTCCTCGGCGCA CCAACCATTGGTCTGCGATCATTGGTAGCTCTCACTCAAAGAACTACATCCTTTGGGAGTATGGAGGGTATGCTAGTGA AGGTGTCAAGCAGGTTGCAGAGCTGGGATCCCCAGTCAAGATGGAAGAAGAAATTCGACAACAAAGTGATGAGGTTTTA ACAGTCATCAAGGCAAAAGCACAGTGGCCTGCCTGGCAGCCTCTGAATGTGAGAGCTGCTCCCTCTGCTGAGTTTTCTG TTGATCGCCACCGGCACCTGATGTCCTTCCTCACCATGCTGGGGCCCAG`
Comments	other stages not yet available

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 6

Heart

7-9

stage 9

Somites

Entry 3

GEISHA Id	SPON1.Peterziel.2011	Data Source	Publication
Complete cDNA Template Probe	show GTGTCCCTCCCTCCTCCCTCCCTCCCTCTCTCCCTCCCTCCCCGCCTGCCCCCTCCCCGCCTCTCCCCTCCCCTCTCCC GCGCCGCAGCCTCCCCCGGGCCGCCCGGCGCTGCCCGAGCTGTGCGGGCGCCGAGGATGGCAGCGCGGCTGCGGCCCCT GGCCCTGCGGCTGCTGGCGCGCACCTTCCCCTTGGTGGCGAGGGGCTTCTCCGACGAGACCCTGGAGAAAGCCGCCAAA TCCGAGGGCTACTGCAGCCGGATCCTGCGAGCCCAAGGCACCAGGAGGGAAGGGTACAATGAATTTAGCCTGAGGGTGG AGGGCGATCCGGAATTCTACAAGCCTGGGAACAGTTACCGCGTGACGCTTTCTGCTGCCACTCCTGCGTACTTTCGAGG ATTCACATTGATTGCTCTGAAGGAAGGAAAAGAAGGTGATAAAGAGGAAGACCATGCGGGAACTTTTCAGATCATAGAT GAAGAAGAGACGCAGTTCATGAGCAATTGTCCCGTCGCGGTTACTGAGAGCACACCTAGAAGGAGGACACGCATCCAGG TCTTCTGGACAGCTCCTCCTACTGGTACGGGCTGTGTCATTCTGAAAGCCAGTATTGTGCAGAAGCGCATTATTTATTT TCAGGACGAGGGTTCTCTCACCAAAAGAATCTGTGAACAAGATTCAGCCTCTGAAGGTGTGACTGACAAACCAACATTA GATTGCTGTGCCTGTGGAACTGCCAAATACAGGCTAACGTTTTATGGAAATTGGTCGGAAAAAACACATCCCAAAGACT TTCCTCGGCGCACCAACCATTGGTCTGCGATCATTGGTAGCTCTCACTCAAAGAACTACATCCTTTGGGAGTATGGAGG GTATGCTAGTGAAGGTGTCAAGCAGGTTGCAGAGCTGGGATCCCCAGTCAAGATGGAAGAAGAAATTCGACAACAAAGT GATGAGGTTTTAACAGTCATCAAGGCAAAAGCACAGTGGCCTGCCTGGCAGCCTCTGAATGTGAGAGCTGCTCCCTCTG CTGAGTTTTCTGTTGATCGCCACCGGCACCTGATGTCCTTCCTCACCATGCTGGGGCCCAGTCCCGACTGGAATGTGGG CCTGTCTGCTGAGGACCTCTGCACCAAGGACTGTGGCTGGGTTCAGAAAGTCGTGCAGGATTTAATCCCCTGGGATGCC GGCACAGACAGTGGCGTCACCTATGAGTCACCCAACAAACCTACAGTTCCTCAAGAGAAGATTAGACCACTTACAAGCT TAGATCACCCTCAGAGTCCATTTTATGATCCAGAAGGAGGATCTATCAAGCTTGTAGCCAGAGTCGTGCTTGAAAGAAT TGCACGCAAGGGGGAGCAGTGCAACTTCGTACCTGATAACATAGATGATATTGTGGCAGACCTAGCACCAGAAGAAAAA GAAGAAGATGATACCCCTGAGACCTGCATATATTCAAACTGGTCCCCCTGGTCAGCCTGCAGCTCCTCTACCTGTGAGA AGGGCAAGAGGATGAGGCAGAGAATGCTTAAAGCTCAGCTGGACCTCAGTGTGCCCTGTCCTGATACCCAAGATTTTCA GCCATGCATGGGTCCAGGCTGCAGTGATGAAGATGGTTCAACTTGCATGATGTCTGACTGGATTACATGGTCCCCCTGT AGTGTTTCCTGTGGAATGGGAACGCGATCTAGAGAGAGATATGTAAAGCAATTCCCCGAAGATGGCTCTATGTGCAAAG TGCCTACTGAAGAAACTGAGAAATGTATTGTAAATGAGGAATGCTCCCCTAGCAGCTGCCTTGTCACCGAATGGGGAGA GTGGGATGAATGCAGTGCTAGCTGTGGCACAGGAATGAAAAGGCGACACAGAATGATCAAGATGACTCCTGCTGATGGA TCTATGTGCAAGGCAGAAACTACAGAGGCAGAGAAATGCATGATGCCCGAATGCCATACTATTCCCTGCCTTCTATCCC CATGGTCTGAATGGAGCGACTGCAGCGTGACATGTGGGAAGGGAATGCGAACCCGGCAAAGGATGCTGAAATCTGCAGC TGAGCTTGGAGACTGCAATGAGGAACTGGAGCAAGCAGAGAAATGCATGCTACCTGAATGCCCCATTGACTGTGAGCTA ACGGAGTGGTCCCAGTGGTCCGAGTGCAATACCTCCTGTGGGAAGGGCCACATGATCAGAACAAGAATGATCAAAATAG AACCACAGTTTGGAGGAACAGCATGCCCAGAAACTGTCCAACGTACTAAATGTCGAGTAAGGAAATGCCTGAGAGGCCC AGGTATGGAAAAGAGGCGTTGGAAGGAGGCCCGGGAGAAAAGAAGAAGTGAACAAGCAAAAAAAAATATTGATAATGAG CAATATCCAGTTTGTAGGCTGAAACCATGGACTGCTTGGACAGAATGTTCTACACTCTGTGGAGGTGGAATTCAGGAGC GCTACATGATGGTAAAGAAGAGGTCCAAAAGCACTCAGTTTACTAGCTGCAAAGACAAAAAGGAGCTAAGAGCATGTAA CGTTCATCCTTGTTAGGAAAACACAAGGCTTCCAAGTGATGCACTCTGAGCTATAAGGAAAGTCAACCTTGGTTTGGTT TTTAAAACAAACAAAAGTATAAAGTGTATATTAGTTTTCATTTTTGCAGTGTGGTTTGCTTTTAGTCTTGCTGGTGCAA GAAATATATTTTATAAATATTTCCTCCGATTAATCTAGGTAAACTTTGATGCTCCAGCTAGCCCTTACTGCATAAAAAT AGTAGGTCATTGTGAGTCATTTAACTGAAGTACAGACATATCTGTGGACATGGAATAGCCATATAGAAATACTACTTGT AAAGACATGGGATGCATGCATATTAACATAACTAATTTGAAGTGACATGTTTCATATGTGGGAGGATTTCTCTCTTGAT TTGATTTAAAAATCCAAAGCAGTGCCTATGTGATTATACAACTATGCCAAGGAGAAATTTCAGTAATGCTGGTTCAATA ATATTAAAGGTGCATGTTTATCTTTTTACAATATTGGGTTAAGCGATAGTTGAAATAATTACCCTACATACTTTTGTTC ACATGGATGCTGCGTTCCATGCAAAATCATCTTTGTTTCTCAAATAGCAACTTACTTAAATAATCTGTGCAGCTCAATA GTGATGTCAGCCCATAACACAGTCACAACACACAAAGACATGTGGCTATCACAGTACCTGTCACTG
Citation	Peterziel H, Sackmann T, Strelau J, Kuhn PH, Lichtenthaler SF, Marom K, Klar A, Unsicker K. F-spondin regulates neuronal survival through activation of disabled-1 in the chicken ciliary ganglion. Mol Cell Neurosci. 2011 Feb;46(2):483-97. Epub 2010 Dec 9.
Copyright	© 2010 Elsevier Inc. All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_204851.1).