Geisha

home

contact

A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

Quick Search

Data Class

Enter Text:

Gene Family QuickSearch

	Transcription Factors
	Growth Factors
	Receptors
	MicroRNAs

Human Disease Gene Search

	Downloads
	Protocols
	About GEISHA
	Contact Us

	Transgenic Birds
	Model Organism Databases
	Gene Expression Databases
	Genomic Resources
	Anatomical Atlases
	Chicken Stage Series

SPON1
spondin 1

Gene

Official Symbol	SPON1
Official Full Name	spondin 1
CGNC ID	9117
also known as	spondin-1, spondin-1\|F-spondin\|spondin 1, extracellular matrix protein, Spondin-1 precursor , F-spondin
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC

Sequence Information

Genomic
RNA	NM_204851
Polypeptide	NP_990182

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly	36333			FBgn0033710
Human	10418	ENSG00000262655		MIM:604989
Mouse	233744	ENSMUSG00000038156	All phenotypic alleles (2):Targeted, other(2)	MGI:2385287
Xenopus	100036727, 378682			991005
Zebrafish	58027	ENSDARG00000010029	ZDB-GENE-000427-9	ZFIN:ZDB-GENE-000427-9

Gene Ontology

Molecular Function
Biological Process	cell adhesion
Cellular Component	proteinaceous extracellular matrix

Links to other databases

Entrez Gene	395657
Ensembl Gene
KEGG	gga:395657

Entry 1

GEISHA Id	SPON1.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	CAGGTATGGAAAAGAGGCGTTG
Reverse cDNA Template Primer	ATTAACCCTCACTAAAGGTGTGACTGTGTTATGGGCTGACATC	cDNA Template Length	897
Forward cDNA Template Probe	show TATTGAGCTGCCNGATTATTTAAGTAAGTTGCTATTTGAGAAACAAAGATGGATTTTGCATGGAACGCAGCATCCATGT GAACAAAAGTATGTAGGGTAATTATTTCAACTATCGCTTAACCCAATATTGTAAAAAGATAAACATGCACCTTTAATAT TATTGAACCAGCATTACTGAAATTTCTCCTTGGCATAGTTGTATAATCACATAGGCACTGCTTTGGATTTTTAAAATCA AATCAAGAGAGAAATCCTCCCACATATGAAACATGTCACTTCAAATTAGTTATGTTAATATGCATGCATCCCATGTCTT TACAAGTAGTATTTCTATATGGCTATTCCATGTCCACAGATATGTCTGTACTTCAGTTAAATGACTCACAATGACCTAC TATTTTTATGCAGTAAGGGCTAGCTGGAGCATCAAAGATTTACTCTCAGCATTAATCTGTGAGGAAATATTTATAAAAT ATATTTCTTGCACCAGCAAGACTAAAAAGCAAACCACACTGCAAAAATGAAAACTAATATACACTTTATACTTTTGTTT GTTTTAAAAACCAAACCAAGGTTGACTTTCCTTTTATAGCTCAGAGTGCATCACTTGGAAGCCTTGTGTTTTCCTAACA AGGATGAACGTTACATGCTCTTAGCTCCTTTTTGTCTTTGCAGCTAGTAAACTGAGTGCTTTTGGACCTCTTCTTTACC ATCATGTAGCGCTCCTGAATTCCACCTCCACAGAGTGTAGAACATTCTGTCCAAGCAGTCCATGGTTTCAGCCTACAAA CTGGATATTGCTCATTATCAATATTTTTTTTTGCTTGGTTCACTTCTTCTTTTCTCCCGGGCCTCCTTCCAACGCCTCT TTT

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

stage 6

Early Endoderm
Ectoderm
Epiblast
Headfold
Neural Plate/Tube
Primitive Streak

7-12

stage 7

stage 8

stage 9

stage 10

stage 12

Ectoderm
Forebrain
Head Process
Hindbrain
Midbrain
Neural Plate/Tube
Notochord
Paraxial Mesoderm
Somites

13-18

stage 13

stage 14

stage 17

Diencephalon
Ear/Otic Placode
Eye
Forebrain
Foregut
Heart
Hindbrain
Mesencephalon
Midbrain
Notochord
Oral Pharynx
Pharyngeal Arches and Clefts
Proepicardium
Sclerotome
Somites
Spinal Cord

19-24

stage 21

stage 24

Allantois
Cranial PNS
Eye
Heart
Hindbrain
Lens
Mesonephros
Midbrain
Notochord
Pharyngeal Arches and Clefts
Proepicardium
Sclerotome
Spinal Cord
Spinal Ganglia and Nerves
Tail
Wing Mesenchyme

25-27

stage 27

Cardinal Veins
Cranial PNS
Eye
Foregut
Heart
Leg Mesenchyme
Lung
Mesonephros
Proepicardium
Sclerotome
Spinal Cord
Spinal Ganglia and Nerves
Wing Mesenchyme

Entry 2

GEISHA Id	O46	Data Source	GEISHA ISH Analysis
Forward cDNA Template Probe	show `TTCTCTCACCAAAAGAATCTGTGAACAAGATTCAGCCTCTGAAGGTGTGACTGACAAACCAATATTAGATTGCTGTGCC TGTGGAACTGCCAAATACAGGCTAACGTTTTATGGAAATTGGTCGGAAAAAACACATCCCAAAGACTTTCCTCGGCGCA CCAACCATTGGTCTGCGATCATTGGTAGCTCTCACTCAAAGAACTACATCCTTTGGGAGTATGGAGGGTATGCTAGTGA AGGTGTCAAGCAGGTTGCAGAGCTGGGATCCCCAGTCAAGATGGAAGAAGAAATTCGACAACAAAGTGATGAGGTTTTA ACAGTCATCAAGGCAAAAGCACAGTGGCCTGCCTGGCAGCCTCTGAATGTGAGAGCTGCTCCCTCTGCTGAGTTTTCTG TTGATCGCCACCGGCACCTGATGTCCTTCCTCACCATGCTGGGGCCCAG`
Comments	other stages not yet available

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

4-6

stage 6

Heart

7-9

stage 9

Somites

Entry 3

GEISHA Id	SPON1.Peterziel.2011	Data Source	Publication
Complete cDNA Template Probe	show GTGTCCCTCCCTCCTCCCTCCCTCCCTCTCTCCCTCCCTCCCCGCCTGCCCCCTCCCCGCCTCTCCCCTCCCCTCTCCC GCGCCGCAGCCTCCCCCGGGCCGCCCGGCGCTGCCCGAGCTGTGCGGGCGCCGAGGATGGCAGCGCGGCTGCGGCCCCT GGCCCTGCGGCTGCTGGCGCGCACCTTCCCCTTGGTGGCGAGGGGCTTCTCCGACGAGACCCTGGAGAAAGCCGCCAAA TCCGAGGGCTACTGCAGCCGGATCCTGCGAGCCCAAGGCACCAGGAGGGAAGGGTACAATGAATTTAGCCTGAGGGTGG AGGGCGATCCGGAATTCTACAAGCCTGGGAACAGTTACCGCGTGACGCTTTCTGCTGCCACTCCTGCGTACTTTCGAGG ATTCACATTGATTGCTCTGAAGGAAGGAAAAGAAGGTGATAAAGAGGAAGACCATGCGGGAACTTTTCAGATCATAGAT GAAGAAGAGACGCAGTTCATGAGCAATTGTCCCGTCGCGGTTACTGAGAGCACACCTAGAAGGAGGACACGCATCCAGG TCTTCTGGACAGCTCCTCCTACTGGTACGGGCTGTGTCATTCTGAAAGCCAGTATTGTGCAGAAGCGCATTATTTATTT TCAGGACGAGGGTTCTCTCACCAAAAGAATCTGTGAACAAGATTCAGCCTCTGAAGGTGTGACTGACAAACCAACATTA GATTGCTGTGCCTGTGGAACTGCCAAATACAGGCTAACGTTTTATGGAAATTGGTCGGAAAAAACACATCCCAAAGACT TTCCTCGGCGCACCAACCATTGGTCTGCGATCATTGGTAGCTCTCACTCAAAGAACTACATCCTTTGGGAGTATGGAGG GTATGCTAGTGAAGGTGTCAAGCAGGTTGCAGAGCTGGGATCCCCAGTCAAGATGGAAGAAGAAATTCGACAACAAAGT GATGAGGTTTTAACAGTCATCAAGGCAAAAGCACAGTGGCCTGCCTGGCAGCCTCTGAATGTGAGAGCTGCTCCCTCTG CTGAGTTTTCTGTTGATCGCCACCGGCACCTGATGTCCTTCCTCACCATGCTGGGGCCCAGTCCCGACTGGAATGTGGG CCTGTCTGCTGAGGACCTCTGCACCAAGGACTGTGGCTGGGTTCAGAAAGTCGTGCAGGATTTAATCCCCTGGGATGCC GGCACAGACAGTGGCGTCACCTATGAGTCACCCAACAAACCTACAGTTCCTCAAGAGAAGATTAGACCACTTACAAGCT TAGATCACCCTCAGAGTCCATTTTATGATCCAGAAGGAGGATCTATCAAGCTTGTAGCCAGAGTCGTGCTTGAAAGAAT TGCACGCAAGGGGGAGCAGTGCAACTTCGTACCTGATAACATAGATGATATTGTGGCAGACCTAGCACCAGAAGAAAAA GAAGAAGATGATACCCCTGAGACCTGCATATATTCAAACTGGTCCCCCTGGTCAGCCTGCAGCTCCTCTACCTGTGAGA AGGGCAAGAGGATGAGGCAGAGAATGCTTAAAGCTCAGCTGGACCTCAGTGTGCCCTGTCCTGATACCCAAGATTTTCA GCCATGCATGGGTCCAGGCTGCAGTGATGAAGATGGTTCAACTTGCATGATGTCTGACTGGATTACATGGTCCCCCTGT AGTGTTTCCTGTGGAATGGGAACGCGATCTAGAGAGAGATATGTAAAGCAATTCCCCGAAGATGGCTCTATGTGCAAAG TGCCTACTGAAGAAACTGAGAAATGTATTGTAAATGAGGAATGCTCCCCTAGCAGCTGCCTTGTCACCGAATGGGGAGA GTGGGATGAATGCAGTGCTAGCTGTGGCACAGGAATGAAAAGGCGACACAGAATGATCAAGATGACTCCTGCTGATGGA TCTATGTGCAAGGCAGAAACTACAGAGGCAGAGAAATGCATGATGCCCGAATGCCATACTATTCCCTGCCTTCTATCCC CATGGTCTGAATGGAGCGACTGCAGCGTGACATGTGGGAAGGGAATGCGAACCCGGCAAAGGATGCTGAAATCTGCAGC TGAGCTTGGAGACTGCAATGAGGAACTGGAGCAAGCAGAGAAATGCATGCTACCTGAATGCCCCATTGACTGTGAGCTA ACGGAGTGGTCCCAGTGGTCCGAGTGCAATACCTCCTGTGGGAAGGGCCACATGATCAGAACAAGAATGATCAAAATAG AACCACAGTTTGGAGGAACAGCATGCCCAGAAACTGTCCAACGTACTAAATGTCGAGTAAGGAAATGCCTGAGAGGCCC AGGTATGGAAAAGAGGCGTTGGAAGGAGGCCCGGGAGAAAAGAAGAAGTGAACAAGCAAAAAAAAATATTGATAATGAG CAATATCCAGTTTGTAGGCTGAAACCATGGACTGCTTGGACAGAATGTTCTACACTCTGTGGAGGTGGAATTCAGGAGC GCTACATGATGGTAAAGAAGAGGTCCAAAAGCACTCAGTTTACTAGCTGCAAAGACAAAAAGGAGCTAAGAGCATGTAA CGTTCATCCTTGTTAGGAAAACACAAGGCTTCCAAGTGATGCACTCTGAGCTATAAGGAAAGTCAACCTTGGTTTGGTT TTTAAAACAAACAAAAGTATAAAGTGTATATTAGTTTTCATTTTTGCAGTGTGGTTTGCTTTTAGTCTTGCTGGTGCAA GAAATATATTTTATAAATATTTCCTCCGATTAATCTAGGTAAACTTTGATGCTCCAGCTAGCCCTTACTGCATAAAAAT AGTAGGTCATTGTGAGTCATTTAACTGAAGTACAGACATATCTGTGGACATGGAATAGCCATATAGAAATACTACTTGT AAAGACATGGGATGCATGCATATTAACATAACTAATTTGAAGTGACATGTTTCATATGTGGGAGGATTTCTCTCTTGAT TTGATTTAAAAATCCAAAGCAGTGCCTATGTGATTATACAACTATGCCAAGGAGAAATTTCAGTAATGCTGGTTCAATA ATATTAAAGGTGCATGTTTATCTTTTTACAATATTGGGTTAAGCGATAGTTGAAATAATTACCCTACATACTTTTGTTC ACATGGATGCTGCGTTCCATGCAAAATCATCTTTGTTTCTCAAATAGCAACTTACTTAAATAATCTGTGCAGCTCAATA GTGATGTCAGCCCATAACACAGTCACAACACACAAAGACATGTGGCTATCACAGTACCTGTCACTG
Citation	Peterziel H, Sackmann T, Strelau J, Kuhn PH, Lichtenthaler SF, Marom K, Klar A, Unsicker K. F-spondin regulates neuronal survival through activation of disabled-1 in the chicken ciliary ganglion. Mol Cell Neurosci. 2011 Feb;46(2):483-97. Epub 2010 Dec 9.
Copyright	© 2010 Elsevier Inc. All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_204851.1).