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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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HAND1
heart and neural crest derivatives expressed 1

Gene

Official Symbol	HAND1
Official Full Name	heart and neural crest derivatives expressed 1
CGNC ID	49492
also known as	eHAND, heart- and neural crest derivatives-expressed protein 1\|extraembryonic tissues, heart, autonomic nervous system and neural crest derivatives-expressed protein 1
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC

Sequence Information

Genomic
RNA	NM_204965
Polypeptide	NP_990296

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human
Mouse
Xenopus
Zebrafish

Gene Ontology

Molecular Function	DNA binding, protein dimerization activity
Biological Process	multicellular organismal development, regulation of transcription, DNA-templated, more...transcription, DNA-templated
Cellular Component	nucleus

Links to other databases

Entrez Gene	395812
Ensembl Gene	ENSGALG00000026787
KEGG	gga:395812

Entry 1

GEISHA Id	HAND1.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	GCACGAGCCCTTCCTCTTCG
Reverse cDNA Template Primer	AATTAACCCTCACTAAAGGGCGTCTCCCGTTTCCTCTTGTTC	cDNA Template Length	449
Forward cDNA Template Probe	show `TTTTTTTCCCTCCTGTTTCGCGGCGTCGCTTTCTTGAGCTCGGCCTTGAAGCCCTCGGGCTCTCCGGGCTGGCTGTCCC TGGCCAGCACCTCCATCAGGTAGGCGATGTAGCTGGTGGCCAGGCGCAGCGTCTTGATCTTGGACAGCTTGGTGTCGGC GGGCACGTTGGGGATGCACTCGCGGAGCTCAGCGAAAGCGCTGTTGATGCTCTCCGTTCTCCTCCTCTCCTTTTTGGGA CCCCCGACCCCTTTCCTTCTCCCCAAACGACCGCTGAGCGCTTCCAGCCTGCCCGCTCCTCCCGAGCCGAACTCGGCGG GGCCGTACGCGGGGCTCTGCCCGTGGAGCTCCGGGGTCACCTCGGCCGGGTTCAGCACCCAGCCGGGGAAATAAGCGCG CTCCTGGTGGCAGCGAGCCGCCGGCCCGAAGAGGAAGGGCTCGTGCAAA`

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

1-3

stage 3

Extraembryonic Mesoderm
Germinal Crescent

4-6

stage 4

stage 5

stage 6

Extraembryonic Mesoderm
Germinal Crescent
Headfold
Lateral Plate Mesoderm

7-12

stage 7

stage 8

stage 9

stage 10

stage 11

stage 12

Allantois
Amnion
Anterior Intestinal Portal
Blood Vessels
Extraembryonic Mesoderm
Lateral Plate Mesoderm
Outflow Tract
Sinus Venosus
extraembryonic endoderm
extraembryonic mesoderm

13-18

stage 13

stage 17

Amnion
Anterior Intestinal Portal
Atria
Blood Vessels
Extraembryonic
Extraembryonic Blood Vessels
Extraembryonic Mesoderm
Gut
Lateral Plate Mesoderm
Notochord
Sinus Venosus
Ventricles
extraembryonic endoderm
extraembryonic mesoderm

Dorsal view.
Ventral view.

19-24

stage 19

stage 23

Allantois
Anterior/Second Heart Field
Gut
Heart
Leg
Pharyngeal Arches and Clefts
Somatic Mesoderm
Wing

stage 25

Allantois
Anterior/Second Heart Field
Gut
Heart
Leg
Pharyngeal Arches and Clefts
Somatic Mesoderm
Wing

Entry 2

GEISHA Id	HAND1.Wu.2002	Data Source	Publication
Complete cDNA Template Probe	show CCGACGGACCATGAACCTGGTGGGGGGGTACCAGCACCACCACCACCACCACCACCACCACCACATGCTGCACGAGCCC TTCCTCTTCGGGCCGGCGGCTCGCTGCCACCAGGAGCGCGCTTATTTCCCCGGCTGGGTGCTGAACCCGGCCGAGGTGA CCCCGGAGCTCCACGGGCAGAGCCCCGCGTACGGCCCCGCCGAGTTCGGCTCGGGAGGAGCGGGCAGGCTGGAAGCGCT CAGCGGTCGTTTGGGGAGAAGGAAAGGGGTCGGGGGTCCCAAAAAGGAGAGGAGGAGAACGGAGAGCATCAACAGCGCT TTCGCTGAGCTCCGCGAGTGCATCCCCAACGTGCCCGCCGACACCAAGCTGTCCAAGATCAAGACGCTGCGCCTGGCCA CCAGCTACATCGCCTACCTGATGGAGGTGCTGGCCAGGGACAGCCAGCCCGGAGAGCCCGAGGGCTTCAAGGCCGAGCT CAAGAAAGCCGACGGCCGCGAGAACAAGAGGAAACGGGAGACGCAGCCCGAGGTGTACTCGCAGCCTTTGGCTCACGGC GAGAAGAAGCTGAAGGGCCGCACCGGTTGGCCCCAGCAGGTCTGGGCTCTGGAACTGAACCCCTGAGCCCCGCTCC
Citation	Wu X, Howard MJ. Transcripts encoding HAND genes are differentially expressed and regulated by BMP4 and GDNF in developing avian gut. Gene Expr. 2002;10(5-6):279-93.
Copyright	copyright @ 2002 Cognizant Comm. Corp.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence was obtained from NCBI (NM_204965).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

25-30

stage 26

Hindgut
Midgut

31-44

stage 36

stage 44

Hindgut
Midgut

Entry 3

GEISHA Id	HAND1.Anderson.2021	Data Source	Direct Submission
Complete cDNA Template Probe	show `TGAGAGCCCGAGGGCTTCAAGGCCGAGCTCAAGAAAGCCGACGGCCGCGAGAACAAGAGGAAACGGGAGATGCAGCCCG AGGTGTACTCGCAGCCTNNGGCTCACGGCGAGAAGAAGCTGAAGGGCCGCACCGGTTGGCCCCAGCAGGTCTGGGCTCT GGAACTGAACCCCTGAGCCCCGCTCC`
Comments	Images and probe sequence information provided by Claire Anderson.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

4-6

stage 5

Lateral Plate Mesoderm
extraembryonic mesoderm

7-12

stage 7

stage 8

stage 9

stage 10

stage 12

Amnion
Anterior Intestinal Portal
Aorta
Extraembryonic Blood Vessels
Heart
Lateral Plate Mesoderm
extraembryonic ectoderm
extraembryonic endoderm
extraembryonic mesoderm

HH8-, Ventral view
Ventral view

Entry 4

GEISHA Id	HAND1.Trevers.2023	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show AACCCAAAGCCCAAAGGCACCACCGCCGCCGCAGCCCCGGCCCCGCCGCCCGCCCGGAGGAGCGCAGCGCAGCTCGGCC ATGGAGCGGTGCTGAGCCCCGCGGGGCCCCGACGGACCATGAACCTGGTGGGGGGCTACCAGCACCACCACCACCACCA CCACCACCACCACATGCTGCACGAGCCCTTCCTCTTCGGGCCGGCGGCTCGCTGCCACCAGGAGCGCGCTTATTTCCCC GGCTGGGTGCTGAACCCGGCCGAGGTGACCCCGGAGCTCCACGGGCAGAGCCCCGCGTACGGCCCCGCCGAGTTCGGCT CGGGAGGAGCGGGCAGGCTGGAAGCGCTCAGCGGTCGTTTGGGGAGAAGGAAAGGGGTCGGGGGTCCCAAAAAGGAGAG GAGGAGAACGGAGAGCATCAACAGCGCTTTCGCTGAGCTCCGCGAGTGCATCCCCAACGTGCCCGCCGACACCAAGCTG TCCAAGATCAAGACGCTGCGCCTGGCCACCAGCTACATCGCCTACCTGATGGAGGTGCTGGCCAGGGACAGCCAGCCCG GAGAGCCCGAGGGCTTCAAGGCCGAGCTCAAGAAAGCCGACGGCCGCGAGAACAAGAGGAAACGGGAGACGCAGCCCGA GGTGTACTCGCAGCCTTTGGCTCACGGCGAGAAGAAGCTGAAGGGCCGCACCGGTTGGCCCCAGCAGGTCTGGGCTCTG GAACTGAACCCCTGAGCCCCGCTCCATGTGCAATGCCGCCGGGGGGGAGCGGAGGAGGCACAGCGGGGCCGGGTGCCGC CGTTCCCCCCCCTACCCCCCCTTCCCCGGGCTCCGTCCCCGTTTTGAAGCCGTCCCCGCTCCCCCAGCCGCCCGCAGCC CCCGCCCGAGCCGGGCCGGGTGGGATCGGTGTTGTTCGTTCGCTGTTGGATTAGCGGAGAAACCCCGATCGCGGCCGAG AGACTGCGTTGAAACTACCTAAGGTGCCTCCGGGACCGCGCCTGGGCCGGGCGTTCTACCTCAGCTCTGCATGACCACT TTCCGAGGGACCGGGCGCGCCACACCACGTAT
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204965).