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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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PCDH19
protocadherin 19

The human orthologue of this gene is associated
with the following human disease:

Epileptic encephalopathy, early infantile, 9

Gene

Official Symbol	PCDH19
Official Full Name	protocadherin 19
CGNC ID	51678
also known as	protocadherin-19, protocadherin-19
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_001098607
Polypeptide	NP_001092077
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.2405

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	57526	ENSG00000165194	MIM:300088	MIM:300460
Mouse	279653	ENSMUSG00000051323		MGI:2685563
Xenopus	100494505			1113171
Zebrafish	555688		ZDB-GENE-030131-4218	ZFIN:ZDB-GENE-030131-4218

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	422263
Ensembl Gene	ENSGALG00000006822
KEGG	gga:422263

Entry 1

GEISHA Id	PCDH19.Lin.2012	Data Source	Publication
Complete cDNA Template Probe	show CCCGGGGGCCTACCTCCTCTCAGTCTCAGCAAGGGACCCTGACCTGGGCCTCAATGGCAGCGTCTCCTACCAGATTGTG CCCTCCCAAGTCAGGGACATGCCTGTCTTCACTTATGTCTCCATCAACCCCAACTCTGGAGATATCTATGCCTTGAGGT CCTTCAATCATGAACAGACCAAGGCCTTTGAGTTCAAAGTCTTGGCGAAAGATGGGGGCAATCCCTCTCTGCAGAGCAA TGCCACTGTCAGGGTGATTGTCCTGGATGTCAACGACAACACGCCGGTGATCACGGCCCCACCGTTGGTCAATGGGACC GCGGAGGTGTACATCCCCCGGAACGCAGGGGTTGGCTACTTGGTGACAGTGGTCAAGGCAGATGACTATGACGAGGGTG AAAATGGCAGGCTTTCCTATGAAATGGTGGAAGGAGACAGAGGATTTTTTGAGATAGACCAGGTCAATGGAGAGATAAG GACCACCAGAGCCTTTGGGGAGAATGCCAAGACAGCCTACGAGCTGATCGTGGTGGCTCACGACCATGGAAAAACATCC CTGTCGGCCTCTGCCTTGATTTTGATATACCTGTCCCCAGCCCTGGATGCCCAGGAGTCCATAGGATCTGTTAACCTCT CCCTGATTTTCATTATTGCCCTGGGGTCTATTGCGGCCATTCTTTTTGTCACCATGATCTTCGTGGCAGTAAAGTGCAA AAGGGATAACAAGGAAATCAGGACCTATAACTGCAGAATCGCAGAGTACTCCTACGGGCATCAGAAGAAATCAAGCAAG AAGAAGAAAATCAGCAAGAACGATATCCGCCTGGTTCCGCGCGACGTGGAGGAGACGGATAAAATGAACGTTGTGAGCT GCTCCTCCCTCACCTCGTCCCTCAACTACTTCGACTACCACCAGCAGACTCTGCCACTGGGCTGCCGCCGCTCCGACAG CACCTTCCTCAATGTGGAGAGCCAGAACAGCCGCAACGCCGGCTCCAACCACATCTACCACCACACTTTCACGGGGCAG AGCCCCCAGCAGCCTGACCTCATCATCAACGGGATGCCGCTGCCTGAGACTGAAAATTACTCCTTTGACTCCAACTACG TGAACAGCAGAGCTCATTTAATAAAAAGCTCCACGTTCAAGGACCTGGAGGGAAACAGCCTGAAGGACAGCGGCCACGA GGAGAGCGACCAGACTGACAGCGAGCACGATGTGCAGCGTGGCCTCTACTGCGACACGGCGGTCAATGACGTGCTCAAC ACCAGCGTGCCCTCCATGGGCTCGCAGGGGCCCGAGCCAGATCAGAGCGAAGGATTTCATTGCAGGGAAGAATGCCGCA TCCTGGGCCACTCAGACCGGTGCTGGATGCCCCGCAGCGCTGTCCCCAGCCGCACCAAGTCCCCCGAGCACAGCAGGAA CGTCATCGCCCTCTCCATAGAAGCGACGGCGGTGGATGCGGAGCCTTACGCAGACTGTAGCGCCAAAAGGACCTTCGCC ACTTTCGGCAAGGAGGGCGGTGAGCCGCCGGCCGAGGAGCGGCCCGGCAACCCCAAAGGCAAAAGAACGGTGGAGCCGG CTGCCGGCAGCCCCAAGGTGAGCGGCGCCGTGC
Citation	Lin J, Wang C, Redies C Expression of delta-protocadherins in the spinal cord of the chicken embryo. J Comp Neurol. 2012 May 1;520(7):1509-31.
Copyright	Copyright © 2011 Wiley Periodicals, Inc.
Comments	The cDNA template used to generate the probe was obtained by PCR as described in the paper.

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

13-18

stage 18

Dermomyotome
Notochord
Spinal Cord

19-24

stage 20

stage 24

Dermomyotome
Sclerotome
Spinal Cord

Cdh7: blue
Cdh7: green
Higher magnification of area boxed in C.
Pax3: red
Pcdh10: green
Pcdh19: green
Pcdh19: red
mc, motorcolumn
me, meninges
ne, neuroepithelial layer

25-30

stage 29

stage 30

Blood Vessels
Spinal Cord

Cervical section of the spine.
Higher magnification of boxed area in E.
Higher magnification of boxed area in G.
Lumbar section of the spine.
Pc19: green fluorescence
Sacral section of the spine.
Thoracic section of the spine.
bv, blood vessel
lm, lateral motor column
me, meninges

31-36

stage 34

stage 36

Blood Vessels
Spinal Cord
Spinal Ganglia and Nerves

Higher magnification of boxed area in I.
Higher magnification of boxed area in K.
Pc19: green fluorescence
lm, lateral motor column
me, meninges
wm, white matter

Entry 2

GEISHA Id	PCDH19.Lin.2013	Data Source	Publication
Complete cDNA Template Probe	show CCCGGGGGCCTACCTCCTCTCAGTCTCAGCAAGGGACCCTGACCTGGGCCTCAATGGCAGCGTCTCCTACCAGATTGTG CCCTCCCAAGTCAGGGACATGCCTGTCTTCACTTATGTCTCCATCAACCCCAACTCTGGAGATATCTATGCCTTGAGGT CCTTCAATCATGAACAGACCAAGGCCTTTGAGTTCAAAGTCTTGGCGAAAGATGGGGGCAATCCCTCTCTGCAGAGCAA TGCCACTGTCAGGGTGATTGTCCTGGATGTCAACGACAACACGCCGGTGATCACGGCCCCACCGTTGGTCAATGGGACC GCGGAGGTGTACATCCCCCGGAACGCAGGGGTTGGCTACTTGGTGACAGTGGTCAAGGCAGATGACTATGACGAGGGTG AAAATGGCAGGCTTTCCTATGAAATGGTGGAAGGAGACAGAGGATTTTTTGAGATAGACCAGGTCAATGGAGAGATAAG GACCACCAGAGCCTTTGGGGAGAATGCCAAGACAGCCTACGAGCTGATCGTGGTGGCTCACGACCATGGAAAAACATCC CTGTCGGCCTCTGCCTTGATTTTGATATACCTGTCCCCAGCCCTGGATGCCCAGGAGTCCATAGGATCTGTTAACCTCT CCCTGATTTTCATTATTGCCCTGGGGTCTATTGCGGCCATTCTTTTTGTCACCATGATCTTCGTGGCAGTAAAGTGCAA AAGGGATAACAAGGAAATCAGGACCTATAACTGCAGAATCGCAGAGTACTCCTACGGGCATCAGAAGAAATCAAGCAAG AAGAAGAAAATCAGCAAGAACGATATCCGCCTGGTTCCGCGCGACGTGGAGGAGACGGATAAAATGAACGTTGTGAGCT GCTCCTCCCTCACCTCGTCCCTCAACTACTTCGACTACCACCAGCAGACTCTGCCACTGGGCTGCCGCCGCTCCGACAG CACCTTCCTCAATGTGGAGAGCCAGAACAGCCGCAACGCCGGCTCCAACCACATCTACCACCACACTTTCACGGGGCAG AGCCCCCAGCAGCCTGACCTCATCATCAACGGGATGCCGCTGCCTGAGACTGAAAATTACTCCTTTGACTCCAACTACG TGAACAGCAGAGCTCATTTAATAAAAAGCTCCACGTTCAAGGACCTGGAGGGAAACAGCCTGAAGGACAGCGGCCACGA GGAGAGCGACCAGACTGACAGCGAGCACGATGTGCAGCGTGGCCTCTACTGCGACACGGCGGTCAATGACGTGCTCAAC ACCAGCGTGCCCTCCATGGGCTCGCAGGGGCCCGAGCCAGATCAGAGCGAAGGATTTCATTGCAGGGAAGAATGCCGCA TCCTGGGCCACTCAGACCGGTGCTGGATGCCCCGCAGCGCTGTCCCCAGCCGCACCAAGTCCCCCGAGCACAGCAGGAA CGTCATCGCCCTCTCCATAGAAGCGACGGCGGTGGATGCGGAGCCTTACGCAGACTGTAGCGCCAAAAGGACCTTCGCC ACTTTCGGCAAGGAGGGCGGTGAGCCGCCGGCCGAGGAGCGGCCCGGCAACCCCAAAGGCAAAAGAACGGTGGAGCCGG CTGCCGGCAGCCCCAAGGTGAGCGGCGCCGTGC
Citation	Lin J, Wang C, Redies C. Expression of multiple delta-protocadherins during feather bud formation. Gene Expr Patterns. 2013 Mar-Apr;13(3-4):57-65. Epub 2013 Jan 11.. DIO: 10.1016/j.gep.2013.01.001.
Copyright	Copyright © 2013 Elsevier B.V. All rights reserved.
Comments	The complete cDNA template sequence was obtained from the information in the publication as described in Lin et al. 2013.