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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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BCAN
brevican

Gene

Official Symbol	BCAN
Official Full Name	brevican
CGNC ID	52630
also known as	brevican core protein
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	Gallus-Browse

Sequence Information

Genomic
RNA	XM_423655
Polypeptide	XP_423655
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	63827	ENSG00000132692		MIM:600347
Mouse	12032	ENSMUSG00000004892	All phenotypic alleles (1):Targeted, other(1)	MGI:1096385
Xenopus	398229			5829330
Zebrafish	334113	ENSDARG00000016736	ZDB-GENE-030131-6045	ZFIN:ZDB-GENE-030131-6045

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	425976
Ensembl Gene
KEGG	gga:425976

Entry 1

GEISHA Id	BCAN.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	TGCCATCAGTGCCAGCATTG
Reverse cDNA Template Primer	ATTAACCCTCACTAAAGGAAGAGTTTGTCCCTTCTCGGTAGC	cDNA Template Length	539
Forward cDNA Template Probe	show AGTAGCATCGTATCTGCTCTGGGCATCGGGGAAATCCCGTCTGGTTGCGAAACTGGAAGATGGTTTTGACACCCGGCAG GGCTCCTCCACAGCGCTCCCTCGGGGTGACGATGGGATAGCGGACGCTGCCATCAGCCAGCCAGCCCGGGTTGCAGGCA TCCAACCCTGCACTCCAGGCTGCATACAGCTGCCCCGTGCTCGCCAGCACCGCACCCTGCGCCCGGCACCGCGCCGCCG CCTCCTCCAGGGTAAACTTGTCCGGGGCTGTCTCCAAAAATATTTCCCCTGGCACGTCCTCGGCATAACAGTACACGTC GTACATGTCCTCCGGGTCCACCACGCCGTAGTTCCTCACCCCAGGGAAGCCATTCATGTCTCCATAGCACGCCTCGCGG GGGGTGTGGATGGGGTACCTGACAGTCTGGTCAGCGATCCAGCCAGCATCACACTGCTCATAGCCGCCCAGATAGGCAG CATACAGCTGCTCAGGGGTGGCAATGCTGGACTTGATGGCA

Stage

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Location (click to highlight)

Comments (click to highlight)

7-12

stage 9

stage 10

Amnion
Anterior Intestinal Portal
Aorta
Blood Islands
Ear/Otic Placode
Extraembryonic Blood Vessels
Eye
Forebrain
Head Mesenchyme
Heart Tube
Hindbrain
Intermediate Mesoderm
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
Notochord
Paraxial Mesoderm
Pharynx
Primitive Streak
Sinus Venosus
Somites
Widespread Expression
extraembryonic mesoderm

13-18

stage 13

stage 17

stage 18

Foregut
Myotome
Neural Plate/Tube
Notochord
Proepicardium
Sclerotome
Sinus Venosus
Somatic Mesoderm
Widespread Expression

19-24

stage 21

stage 22

Dermomyotome
Foregut
Head Mesenchyme
Mesonephros
Myotome
Neural Plate/Tube
Pharyngeal Arches and Clefts
Sclerotome
Somatic Mesoderm

stage 25

Dermomyotome
Foregut
Head Mesenchyme
Myotome
Pharyngeal Arches and Clefts
Sclerotome
Somatic Mesoderm
Spinal Cord

Entry 2

GEISHA Id	BCAN.Domowicz.2008	Data Source	Publication
Complete cDNA Template Probe	show AAAGAGAGAGAGAGAGAGAGAGAGAGCCACGGACACGGACACACACAGAGGACTCCTCTCCTTTCGGTGCCTGCACTTA TGCCCGGTGCAGCTCACTCCCAGCCCTGCTGCCAACCTGCTGCCTACTGCCGCCCCGGAGAAACCTCAGCTCAGCCCCA CTCCGGGCTCCCGGGGACCCCCGCCCGCACCGTGAGCAAGGTGGGACACGGGGAGAGCCCCTCCTGCGGGCGCTGTGCT GCGCTATTCGTTGCCATATCTCATGTCACCTCTGTGCCAGCTGAAAGGCACAGGATGGCCTCAGTCCTCCCACTGCTGC TGCTCTGGGCGTTTGCCCCCACAGTGGTCCCGGAGGTGCTCAGCCCTGAAGATGTCACAGATGACCTCAAGGCCCTGCA GGTGTCCATCCCGCGGCACCCAGCCCTGCACGCTGTGCTGGCAGGGGACGTCACCATCCCCTGCCTCATCACCTACCTC GCACCCCTGCCCACTGCCAGCACGGCGGGGCGCCGGGCTGTGCTGGGAGCCCCCCGGGTCAAGCATGAGGAAATACCGG CGGGGCGCCGGGCTGTGCTGGGAGCCCCCCGGGTCAAGTGGACCTTCATCTCCGAAGGCAGGGAGGCAGAGATCTTGGT AGCACGGGGGGAAAGGGTGAAGGTGAGTGAGGACTACCGCCTCCGTGCCTCCTTGCCAGTCTTCCAGCAGCGCTACACT GACGCCTCTCTGCTGCTCACTGAGCTGCGCCCCAACGACTCGGGGATCTACCGCTGTGATGTGCAGCACGGCATCGAGG ATGGCCACGACATCCTCGACCTCAGAGTCAAAGGGGTGGTGTTTCACTACCGTGGGGGTTCCACACGCTACACCTACAC TTTTGCTGAGGCTCAGGAGGCGTGCACTGCCATCAGTGCCAGCATTGCCACCCCTGAGCAGCTGTATGCTGCCTATCTG GGCGGCTATGAGCAGTGTGATGCTGGCTGGATCGCTGACCAGACTGTCAGGTACCCCATCCACACCCCCCGCGAGGCGT GCTATGGAGACATGAATGGCTTCCCTGGGGTGAGGAACTACGGCGTGGTGGACCCGGAGGACATGTACGACGTGTACTG TTATGCCGAGGACGTGCCAGGGGAAATATTTTTGGAGACAGCCCCGGACAAGTTTACCCTGGAGGAGGCGGCGGCGCGG TGCCGGGCGCAGGGTGCGGTGCTGGCGAGCACGGGGCAGCTGTATGCAGCCTGGAGTGCAGGGTTGGATGCCTGCAACC CGGGCTGGCTGGCTGATGGCAGCGTCCGCTATCCCATCGTCACCCCGAGGGAGCGCTGTGGAGGAGCCCTGCCGGGTGT CAAAACCATCTTCCAGTTTCGCAACCAGACGGGATTCCCCGATGCCCAGAGCAGATACGATGCGTACTGCTACCGAGAA GGGACAAACTCTTTCCCTGAGGCTGCAGGAAAATATCAAGCCAGAGAGCCCGAGGGCCTCCAGGAGATTGTTACAGTGG CAGAAAAGCTGGAGGAGCTGCAGCTGCCCAAAGCGCAAGTGGAGATTGAGTCGCGAGGGGCTATATACGCCGTCCCTTT CTTTAAGGACGTGGCTGATGCTGAGCTGGAAAAGCCAAGCCTGTCCCCCGAAGACACCCGGCACCCCCCAGTAGATGCC TCCTCGTCCTCAGCACGAGGACATCACCCATCCTCAGCCGCCCCTTTCCCCACAGCCCCAGCCGTCCCCAAGGCAGGCG TCCCGCATAGCTGTGCTGCACAACCAGGCAGCCCATCCCCTGCAGACCAGGACGGGGCGACAGGGAAAGGTGGAAGGTG CGCAGAGGCCAGGCAAGAGCCATCCCGCACGGAGGATGGAGCAGCGCTGGAGTGGCCCCTGGGCTCTGTGCTGGGTGAG GACTTCGGGAACACAGCAGCAGAGAGTCCGGGCAGAGGGCAAGAGCCTGGACAGCCCATGAAGCCGAACGTGCAGACAC TTTTGGTGGGCACAGAAGGACCCAGTGACGCTCTGTCCCCAGCGGTGGCTGCAGCAGATATCCAAGAGCCATCCCCCTC CATAGGCAGCCGTGGGGCCGGGGGGGCGAGCACCCCCATCCACACCGCGGGGGCTGCTGAGGACCCTGAGCTATCAGGA GATGTGACTGAAAACCCCGGGGCATCCCCGCTGCCCCCCGCACCGCCGCAGCTGCAGGATGATGGAGAGGAGCAGTCGG GGGCCCCGTGGCTCTCCTCACCCACAGCACCGGGGGATGGGGGCACAGCCCCAGCGACGGCGGTCACCCCATGGCACGC AGAGGTGCCCGGCAGCAGCGATGCACTGCAAACCCCAAGCACCGATCGCGGGATGCCCGCTGCATCTTCAGAAGAGGAG GAGGATGAGGAAGAGGAGGAGGATGAAGAAGAGCGCCCGATGCCCTCTGTTGCAACCGTGGAGGGTTTCCTTGCAGCCA TTCCCGGAGAACCAGGTGGCTGCATCCCCAACCCCTGCCTGAACGGAGGGACCTGCATTGAGGATGGCACCCATCCCAC CTGCCTCTGCCTGCCAGGCTATGGAGGGAGCAGCTGCGAGAGACCGCTGAAGAGGTGCAGCCCCAGCTGGGACAGCTTC CAGGGAGCCTGCTACAAGCACTTCTCCACCCGGAGGAGCTGGGAGGATGCCGAGTCGCAGTGCAGGAATTTTGGGGGGC ATCTGGCCACCATCCTGACCCCCGAGGAGCAGGACTTCATCAACGGTATGTGGGGCCAGCCCAGCCTGCAGGGCATGGG ACCCAGAATCCCTCCACAGTGGGTCTGA
Citation	Domowicz MS, Sanders TA, Ragsdale CW, Schwartz NB. Aggrecan is expressed by embryonic brain glia and regulates astrocyte development. Dev Biol. 2008 Mar 1;315(1):114-24. Epub 2008 Jan 22.
Copyright	Copyright © 2008 Published by Elsevier Inc.
Comments	The probe shown was generated using PCR and degenerate primers based on sequences of the mammalian orthologs. Authors indicated the clone was XP_423655, the protein for this cDNA.