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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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TBX6
T-box 6

Gene

Official Symbol	TBX6
Official Full Name	T-box 6
CGNC ID	4798
also known as	CH-TBX6L, Tbx6L, T-box-containing protein TBX6L\|T-box containing protein\|transcription factor TBX6L, t-box 6
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_001030367
Polypeptide	NP_001025538
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.466

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human
Mouse
Xenopus
Zebrafish	30264	ENSDARG00000007329	ZDB-GENE-990615-5	ZFIN:ZDB-GENE-990615-5

Gene Ontology

Molecular Function	DNA binding, sequence-specific DNA binding transcription factor activity
Biological Process	multicellular organismal development, transcription, DNA-templated
Cellular Component	nucleus

Links to other databases

Entrez Gene	395792
Ensembl Gene	ENSGALG00000006374
KEGG	gga:395792

Entry 1

GEISHA Id	Tbx6.James.2005	Data Source	Publication
Complete cDNA Template Probe	show CTGGATCTCCGATGGAAGGGCTTTTGCATGCTTCAGGACATCAGACCTGCTTTTGAACTGGACTATTTTGGCTCCCTTA TTGAGAACTCTGGTGGCTCTCTCGGCTGTGCGACCTCCTAGACTCCACATTACATGGAAAAATGCAAGTTTTGCCAGAC ATTAAAGCGCCATGTGACGCACTTGCTTCCCCCAGCCTGGAGCCCTACCCGCAGAGCTCCATCACGGTCACCCTGGAGG ACATGGGTCTCTGGATGAAGTTTCATCAGATAGGGACGGAGATGATCATCACCAAATCCGGCAGACGAATGTTTCCACA ATGCAAAATCAAAGTCTCTGGCTTAATCCCCTATGCCAAGTACCTCATGCTGGTGGATTTTGTGCCTGTGGACAACTTC AGGTACAAGTGGAATAAAGATCAGTGGGAAGTTGCTGGAAAAGCAGAGCCCCAGCTCCCTTGTCGCACCTATGTCCACC CCGATTCCCCCGCTCCTGGCAGCCACTGGATGAAGGAACCTGTCTCCTTCCAGAAACTGAAGCTCACCAACAACACTCT GGATCAACATGGGCATATCATCCTGCACTCCATGCACCGTTACAAGCCTCGCTTCCACATTGTGCAGGCAGATGACCTC TTCAGTGTTCGCTGGAGTATATTCCAAGTCTTCAGCTTCCCTGAGACTGTCTTCACTTCTGTTACTGCCTACCAGAATG AGCAGATCACAAAGCTGAAGATTGACAACAATCCATTTGCTAAAGGTTTCCGGGAGCATGGGAAGAACACTCGAAGGGA AGGACGAGCCAAATCCCAGAAGCCAAGTCCAGCCAAGGGCCAGAAGAGAAAGCTGCCAGAGGAAAAGGAGTCTGGTGCT GAGGAACGTGATTTTGAGAAAGATGAGAATGTGGATGTGAAGGAAGAGAGTAACCCCATTGTGGTCAGCAGTGGGTACC CCTTCTGGATCTCAGAGCAGAACAGCAGCCATGCCTTTCCTGCAGCATCGCCGGCGCCAGCCGAACAGAGGGAAGGTCC AGCCAGAGAGCAGCAAGTGCCTACACCATCCTACCAGACCTACCGGTTCCACGAAGCTGGGGACAGCCAGCAGCTCCCC AGCCGCGATGTCGCTGCCTTGAACGACTTCCGAGCGAGGTGCCACCCCTTGGATCTCGCCACGGTGCCCGAGCACGACT CCAAACAGCTCCCAGAGGGCTTCACCAACCTGCCTCCGCTGCCCCCACCTCTGCCCCCTCCCCAGGACTACACTGGAGT GGTGAACATGGCTCTGGACTCAGTGGGGAAACCTGGAGCTCGAGCGCCCATGTACAGTCCTTATGGCACCGAGCAAGGC CTTGGGCAGTGGATGGTGCCACCCCACAGCCAGTACAGGGCGATGAGCTACTCGGCCTTCTCCACAGATTACAACACAC AAGGGGCTTCGGGACATGCCCACGGGACCATGGCAGAGTGGAGCCAGTACCCACTGTTCCCCTATGCCTGCTGGTGAGC AGGGAGGAACCTTCCCAATGAACAGACTGAAAGAAAATTGTAAATGAGAACAGATTTGTTCTGGGGTGCTAACCTTGAA GCCTTGTCTATAGTAGGCAAAGAGGCATTGCTGCAGATGGTGGCATGGGACGCCTTCACTTCCTTGTCTCCTTGCACAA CAACCCTCACGGTATTTCACAAGCAGCAGCCACACTGCTGGCAGTCCCAGCTGTGTCAGGGCACGTCTGGCTCAATCTG TGTGTTCTGCAGTGCTTCTTCTCCAGCAGGAATAGGAAACCACAGGAACTGTGAGAACTGCAGTGAAAGAGCTGCCGAC CTCTGTCCCAGTCCATGCTTGCATTTGGCAGCTTCCAAAATCCCTTCTTCCCAGGACACGTGTGCAAGGAGATAGGGGC TGAGGAGTTTCAGTAAGCCAGGCCAAGAAGCTGTAGAGGATTTTTGCAAGGATGAGCCAGAAAAGCAATTCCAGTGACC CCTTGAGCAGGTTTCATCACTTAGTATAGTCAAACTAAAATCTTGCCTTCTTTTCCAGGAGCATGTGACAGTAAAACAT GCAGTGGTACACGCGGCTGTGGATCATGCAGGCAGGGAAGAGCTCGTCTTCTGCACGAGAACCAGCAGCAAGGCTCTGT GTTGNGTCTGTCCCTCATGCCCACCCCTATCTCATCTCCCC
Citation	James RG, Schultheiss TM. Bmp signaling promotes intermediate mesoderm gene expression in a dose-dependent, cell-autonomous and translation-dependent manner. Dev Biol. 2005 Dec 1;288(1):113-25. Epub 2005 Oct 21.
Copyright	Copyright © 2005 Elsevier Inc. All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_001030367).

Stage

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7-11

stage 11

Somites

all

Entry 2

GEISHA Id	TBX6.Hardy.2011	Data Source	Publication
Complete cDNA Template Probe	show CTGGATCTCCGATGGAAGGGCTTTTGCATGCTTCAGGACATCAGACCTGCTTTTGAACTGGACTATTTTGGCTCCCTTA TTGAGAACTCTGGTGGCTCTCTCGGCTGTGCGACCTCCTAGACTCCACATTACATGGAAAAATGCAAGTTTTGCCAGAC ATTAAAGCGCCATGTGACGCACTTGCTTCCCCCAGCCTGGAGCCCTACCCGCAGAGCTCCATCACGGTCACCCTGGAGG ACATGGGTCTCTGGATGAAGTTTCATCAGATAGGGACGGAGATGATCATCACCAAATCCGGCAGACGAATGTTTCCACA ATGCAAAATCAAAGTCTCTGGCTTAATCCCCTATGCCAAGTACCTCATGCTGGTGGATTTTGTGCCTGTGGACAACTTC AGGTACAAGTGGAATAAAGATCAGTGGGAAGTTGCTGGAAAAGCAGAGCCCCAGCTCCCTTGTCGCACCTATGTCCACC CCGATTCCCCCGCTCCTGGCAGCCACTGGATGAAGGAACCTGTCTCCTTCCAGAAACTGAAGCTCACCAACAACACTCT GGATCAACATGGGCATATCATCCTGCACTCCATGCACCGTTACAAGCCTCGCTTCCACATTGTGCAGGCAGATGACCTC TTCAGTGTTCGCTGGAGTATATTCCAAGTCTTCAGCTTCCCTGAGACTGTCTTCACTTCTGTTACTGCCTACCAGAATG AGCAGATCACAAAGCTGAAGATTGACAACAATCCATTTGCTAAAGGTTTCCGGGAGCATGGGAAGAACACTCGAAGGGA AGGACGAGCCAAATCCCAGAAGCCAAGTCCAGCCAAGGGCCAGAAGAGAAAGCTGCCAGAGGAAAAGGAGTCTGGTGCT GAGGAACGTGATTTTGAGAAAGATGAGAATGTGGATGTGAAGGAAGAGAGTAACCCCATTGTGGTCAGCAGTGGGTACC CCTTCTGGATCTCAGAGCAGAACAGCAGCCATGCCTTTCCTGCAGCATCGCCGGCGCCAGCCGAACAGAGGGAAGGTCC AGCCAGAGAGCAGCAAGTGCCTACACCATCCTACCAGACCTACCGGTTCCACGAAGCTGGGGACAGCCAGCAGCTCCCC AGCCGCGATGTCGCTGCCTTGAACGACTTCCGAGCGAGGTGCCACCCCTTGGATCTCGCCACGGTGCCCGAGCACGACT CCAAACAGCTCCCAGAGGGCTTCACCAACCTGCCTCCGCTGCCCCCACCTCTGCCCCCTCCCCAGGACTACACTGGAGT GGTGAACATGGCTCTGGACTCAGTGGGGAAACCTGGAGCTCGAGCGCCCATGTACAGTCCTTATGGCACCGAGCAAGGC CTTGGGCAGTGGATGGTGCCACCCCACAGCCAGTACAGGGCGATGAGCTACTCGGCCTTCTCCACAGATTACAACACAC AAGGGGCTTCGGGACATGCCCACGGGACCATGGCAGAGTGGAGCCAGTACCCACTGTTCCCCTATGCCTGCTGGTGAGC AGGGAGGAACCTTCCCAATGAACAGACTGAAAGAAAATTGTAAATGAGAACAGATTTGTTCTGGGGTGCTAACCTTGAA GCCTTGTCTATAGTAGGCAAAGAGGCATTGCTGCAGATGGTGGCATGGGACGCCTTCACTTCCTTGTCTCCTTGCACAA CAACCCTCACGGTATTTCACAAGCAGCAGCCACACTGCTGGCAGTCCCAGCTGTGTCAGGGCACGTCTGGCTCAATCTG TGTGTTCTGCAGTGCTTCTTCTCCAGCAGGAATAGGAAACCACAGGAACTGTGAGAACTGCAGTGAAAGAGCTGCCGAC CTCTGTCCCAGTCCATGCTTGCATTTGGCAGCTTCCAAAATCCCTTCTTCCCAGGACACGTGTGCAAGGAGATAGGGGC TGAGGAGTTTCAGTAAGCCAGGCCAAGAAGCTGTAGAGGATTTTTGCAAGGATGAGCCAGAAAAGCAATTCCAGTGACC CCTTGAGCAGGTTTCATCACTTAGTATAGTCAAACTAAAATCTTGCCTTCTTTTCCAGGAGCATGTGACAGTAAAACAT GCAGTGGTACACGCGGCTGTGGATCATGCAGGCAGGGAAGAGCTCGTCTTCTGCACGAGAACCAGCAGCAAGGCTCTGT GTTGNGTCTGTCCCTCATGCCCACCCCTATCTCATCTCCCC
Citation	Hardy KM, Yatskievych TA, Konieczka J, Bobbs AS, Antin PB. FGF signalling through RAS/MAPK and PI3K pathways regulates cell movement and gene expression in the chicken primitive streak without affecting E-cadherin expression. BMC Dev Biol. 2011 Mar 21;11:20.
Copyright	© 2011 Hardy et al; licensee BioMed Central Ltd.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_001030367).

Stage

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stage 4

Primitive Streak

Entry 3

GEISHA Id	TBX-6L.Dady.2012	Data Source	Publication
Complete cDNA Template Probe	show CTGGATCTCCGATGGAAGGGCTTTTGCATGCTTCAGGACATCAGACCTGCTTTTGAACTGGACTATTTTGGCTCCCTTA TTGAGAACTCTGGTGGCTCTCTCGGCTGTGCGACCTCCTAGACTCCACATTACATGGAAAAATGCAAGTTTTGCCAGAC ATTAAAGCGCCATGTGACGCACTTGCTTCCCCCAGCCTGGAGCCCTACCCGCAGAGCTCCATCACGGTCACCCTGGAGG ACATGGGTCTCTGGATGAAGTTTCATCAGATAGGGACGGAGATGATCATCACCAAATCCGGCAGACGAATGTTTCCACA ATGCAAAATCAAAGTCTCTGGCTTAATCCCCTATGCCAAGTACCTCATGCTGGTGGATTTTGTGCCTGTGGACAACTTC AGGTACAAGTGGAATAAAGATCAGTGGGAAGTTGCTGGAAAAGCAGAGCCCCAGCTCCCTTGTCGCACCTATGTCCACC CCGATTCCCCCGCTCCTGGCAGCCACTGGATGAAGGAACCTGTCTCCTTCCAGAAACTGAAGCTCACCAACAACACTCT GGATCAACATGGGCATATCATCCTGCACTCCATGCACCGTTACAAGCCTCGCTTCCACATTGTGCAGGCAGATGACCTC TTCAGTGTTCGCTGGAGTATATTCCAAGTCTTCAGCTTCCCTGAGACTGTCTTCACTTCTGTTACTGCCTACCAGAATG AGCAGATCACAAAGCTGAAGATTGACAACAATCCATTTGCTAAAGGTTTCCGGGAGCATGGGAAGAACACTCGAAGGGA AGGACGAGCCAAATCCCAGAAGCCAAGTCCAGCCAAGGGCCAGAAGAGAAAGCTGCCAGAGGAAAAGGAGTCTGGTGCT GAGGAACGTGATTTTGAGAAAGATGAGAATGTGGATGTGAAGGAAGAGAGTAACCCCATTGTGGTCAGCAGTGGGTACC CCTTCTGGATCTCAGAGCAGAACAGCAGCCATGCCTTTCCTGCAGCATCGCCGGCGCCAGCCGAACAGAGGGAAGGTCC AGCCAGAGAGCAGCAAGTGCCTACACCATCCTACCAGACCTACCGGTTCCACGAAGCTGGGGACAGCCAGCAGCTCCCC AGCCGCGATGTCGCTGCCTTGAACGACTTCCGAGCGAGGTGCCACCCCTTGGATCTCGCCACGGTGCCCGAGCACGACT CCAAACAGCTCCCAGAGGGCTTCACCAACCTGCCTCCGCTGCCCCCACCTCTGCCCCCTCCCCAGGACTACACTGGAGT GGTGAACATGGCTCTGGACTCAGTGGGGAAACCTGGAGCTCGAGCGCCCATGTACAGTCCTTATGGCACCGAGCAAGGC CTTGGGCAGTGGATGGTGCCACCCCACAGCCAGTACAGGGCGATGAGCTACTCGGCCTTCTCCACAGATTACAACACAC AAGGGGCTTCGGGACATGCCCACGGGACCATGGCAGAGTGGAGCCAGTACCCACTGTTCCCCTATGCCTGCTGGTGAGC AGGGAGGAACCTTCCCAATGAACAGACTGAAAGAAAATTGTAAATGAGAACAGATTTGTTCTGGGGTGCTAACCTTGAA GCCTTGTCTATAGTAGGCAAAGAGGCATTGCTGCAGATGGTGGCATGGGACGCCTTCACTTCCTTGTCTCCTTGCACAA CAACCCTCACGGTATTTCACAAGCAGCAGCCACACTGCTGGCAGTCCCAGCTGTGTCAGGGCACGTCTGGCTCAATCTG TGTGTTCTGCAGTGCTTCTTCTCCAGCAGGAATAGGAAACCACAGGAACTGTGAGAACTGCAGTGAAAGAGCTGCCGAC CTCTGTCCCAGTCCATGCTTGCATTTGGCAGCTTCCAAAATCCCTTCTTCCCAGGACACGTGTGCAAGGAGATAGGGGC TGAGGAGTTTCAGTAAGCCAGGCCAAGAAGCTGTAGAGGATTTTTGCAAGGATGAGCCAGAAAAGCAATTCCAGTGACC CCTTGAGCAGGTTTCATCACTTAGTATAGTCAAACTAAAATCTTGCCTTCTTTTCCAGGAGCATGTGACAGTAAAACAT GCAGTGGTACACGCGGCTGTGGATCATGCAGGCAGGGAAGAGCTCGTCTTCTGCACGAGAACCAGCAGCAAGGCTCTGT GTTGNGTCTGTCCCTCATGCCCACCCCTATCTCATCTCCCC
Citation	Dady A, Blavet C, Duband JL Timing and kinetics of E- to N-cadherin switch during neurulation in the avian embryo DEVELOPMENTAL DYNAMICS. Volume 241, Issue 8, August 2012, Pages: 13331349.
Copyright	Copyright © 2012 Wiley-Liss, Inc.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (Acc. # AB193180.1).

Stage

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13-14

stage 14

Paraxial Mesoderm

Entry 4

GEISHA Id	TBX6.Tenin.2010	Data Source	Publication
Complete cDNA Template Probe	show CTGGATCTCCGATGGAAGGGCTTTTGCATGCTTCAGGACATCAGACCTGCTTTTGAACTGGACTATTTTGGCTCCCTTA TTGAGAACTCTGGTGGCTCTCTCGGCTGTGCGACCTCCTAGACTCCACATTACATGGAAAAATGCAAGTTTTGCCAGAC ATTAAAGCGCCATGTGACGCACTTGCTTCCCCCAGCCTGGAGCCCTACCCGCAGAGCTCCATCACGGTCACCCTGGAGG ACATGGGTCTCTGGATGAAGTTTCATCAGATAGGGACGGAGATGATCATCACCAAATCCGGCAGACGAATGTTTCCACA ATGCAAAATCAAAGTCTCTGGCTTAATCCCCTATGCCAAGTACCTCATGCTGGTGGATTTTGTGCCTGTGGACAACTTC AGGTACAAGTGGAATAAAGATCAGTGGGAAGTTGCTGGAAAAGCAGAGCCCCAGCTCCCTTGTCGCACCTATGTCCACC CCGATTCCCCCGCTCCTGGCAGCCACTGGATGAAGGAACCTGTCTCCTTCCAGAAACTGAAGCTCACCAACAACACTCT GGATCAACATGGGCATATCATCCTGCACTCCATGCACCGTTACAAGCCTCGCTTCCACATTGTGCAGGCAGATGACCTC TTCAGTGTTCGCTGGAGTATATTCCAAGTCTTCAGCTTCCCTGAGACTGTCTTCACTTCTGTTACTGCCTACCAGAATG AGCAGATCACAAAGCTGAAGATTGACAACAATCCATTTGCTAAAGGTTTCCGGGAGCATGGGAAGAACACTCGAAGGGA AGGACGAGCCAAATCCCAGAAGCCAAGTCCAGCCAAGGGCCAGAAGAGAAAGCTGCCAGAGGAAAAGGAGTCTGGTGCT GAGGAACGTGATTTTGAGAAAGATGAGAATGTGGATGTGAAGGAAGAGAGTAACCCCATTGTGGTCAGCAGTGGGTACC CCTTCTGGATCTCAGAGCAGAACAGCAGCCATGCCTTTCCTGCAGCATCGCCGGCGCCAGCCGAACAGAGGGAAGGTCC AGCCAGAGAGCAGCAAGTGCCTACACCATCCTACCAGACCTACCGGTTCCACGAAGCTGGGGACAGCCAGCAGCTCCCC AGCCGCGATGTCGCTGCCTTGAACGACTTCCGAGCGAGGTGCCACCCCTTGGATCTCGCCACGGTGCCCGAGCACGACT CCAAACAGCTCCCAGAGGGCTTCACCAACCTGCCTCCGCTGCCCCCACCTCTGCCCCCTCCCCAGGACTACACTGGAGT GGTGAACATGGCTCTGGACTCAGTGGGGAAACCTGGAGCTCGAGCGCCCATGTACAGTCCTTATGGCACCGAGCAAGGC CTTGGGCAGTGGATGGTGCCACCCCACAGCCAGTACAGGGCGATGAGCTACTCGGCCTTCTCCACAGATTACAACACAC AAGGGGCTTCGGGACATGCCCACGGGACCATGGCAGAGTGGAGCCAGTACCCACTGTTCCCCTATGCCTGCTGGTGAGC AGGGAGGAACCTTCCCAATGAACAGACTGAAAGAAAATTGTAAATGAGAACAGATTTGTTCTGGGGTGCTAACCTTGAA GCCTTGTCTATAGTAGGCAAAGAGGCATTGCTGCAGATGGTGGCATGGGACGCCTTCACTTCCTTGTCTCCTTGCACAA CAACCCTCACGGTATTTCACAAGCAGCAGCCACACTGCTGGCAGTCCCAGCTGTGTCAGGGCACGTCTGGCTCAATCTG TGTGTTCTGCAGTGCTTCTTCTCCAGCAGGAATAGGAAACCACAGGAACTGTGAGAACTGCAGTGAAAGAGCTGCCGAC CTCTGTCCCAGTCCATGCTTGCATTTGGCAGCTTCCAAAATCCCTTCTTCCCAGGACACGTGTGCAAGGAGATAGGGGC TGAGGAGTTTCAGTAAGCCAGGCCAAGAAGCTGTAGAGGATTTTTGCAAGGATGAGCCAGAAAAGCAATTCCAGTGACC CCTTGAGCAGGTTTCATCACTTAGTATAGTCAAACTAAAATCTTGCCTTCTTTTCCAGGAGCATGTGACAGTAAAACAT GCAGTGGTACACGCGGCTGTGGATCATGCAGGCAGGGAAGAGCTCGTCTTCTGCACGAGAACCAGCAGCAAGGCTCTGT GTTGNGTCTGTCCCTCATGCCCACCCCTATCTCATCTCCCC
Citation	Tenin G, Wright D, Ferjentsik Z, Bone R, McGrew MJ, Maroto M. The chick somitogenesis oscillator is arrested before all paraxial mesoderm is segmented into somites. BMC Dev Biol. 2010 Feb 25;10:24.
Copyright	authors retain copyright of their article, and grant any third party the right to use reproduce and disseminate the article, subject to the terms of BMC Developmental Biology copyright and license agreement

Stage

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19-24

stage 20

stage 22

stage 24

Tail

25-27

stage 25

stage 26

stage 27

Tail
Unlabeled Embryonic

Entry 5

GEISHA Id	TBX6L.Acloque.2008	Data Source	Publication
Complete cDNA Template Probe	show CTGGATCTCCGATGGAAGGGCTTTTGCATGCTTCAGGACATCAGACCTGCTTTTGAACTGGACTATTTTGGCTCCCTTA TTGAGAACTCTGGTGGCTCTCTCGGCTGTGCGACCTCCTAGACTCCACATTACATGGAAAAATGCAAGTTTTGCCAGAC ATTAAAGCGCCATGTGACGCACTTGCTTCCCCCAGCCTGGAGCCCTACCCGCAGAGCTCCATCACGGTCACCCTGGAGG ACATGGGTCTCTGGATGAAGTTTCATCAGATAGGGACGGAGATGATCATCACCAAATCCGGCAGACGAATGTTTCCACA ATGCAAAATCAAAGTCTCTGGCTTAATCCCCTATGCCAAGTACCTCATGCTGGTGGATTTTGTGCCTGTGGACAACTTC AGGTACAAGTGGAATAAAGATCAGTGGGAAGTTGCTGGAAAAGCAGAGCCCCAGCTCCCTTGTCGCACCTATGTCCACC CCGATTCCCCCGCTCCTGGCAGCCACTGGATGAAGGAACCTGTCTCCTTCCAGAAACTGAAGCTCACCAACAACACTCT GGATCAACATGGGCATATCATCCTGCACTCCATGCACCGTTACAAGCCTCGCTTCCACATTGTGCAGGCAGATGACCTC TTCAGTGTTCGCTGGAGTATATTCCAAGTCTTCAGCTTCCCTGAGACTGTCTTCACTTCTGTTACTGCCTACCAGAATG AGCAGATCACAAAGCTGAAGATTGACAACAATCCATTTGCTAAAGGTTTCCGGGAGCATGGGAAGAACACTCGAAGGGA AGGACGAGCCAAATCCCAGAAGCCAAGTCCAGCCAAGGGCCAGAAGAGAAAGCTGCCAGAGGAAAAGGAGTCTGGTGCT GAGGAACGTGATTTTGAGAAAGATGAGAATGTGGATGTGAAGGAAGAGAGTAACCCCATTGTGGTCAGCAGTGGGTACC CCTTCTGGATCTCAGAGCAGAACAGCAGCCATGCCTTTCCTGCAGCATCGCCGGCGCCAGCCGAACAGAGGGAAGGTCC AGCCAGAGAGCAGCAAGTGCCTACACCATCCTACCAGACCTACCGGTTCCACGAAGCTGGGGACAGCCAGCAGCTCCCC AGCCGCGATGTCGCTGCCTTGAACGACTTCCGAGCGAGGTGCCACCCCTTGGATCTCGCCACGGTGCCCGAGCACGACT CCAAACAGCTCCCAGAGGGCTTCACCAACCTGCCTCCGCTGCCCCCACCTCTGCCCCCTCCCCAGGACTACACTGGAGT GGTGAACATGGCTCTGGACTCAGTGGGGAAACCTGGAGCTCGAGCGCCCATGTACAGTCCTTATGGCACCGAGCAAGGC CTTGGGCAGTGGATGGTGCCACCCCACAGCCAGTACAGGGCGATGAGCTACTCGGCCTTCTCCACAGATTACAACACAC AAGGGGCTTCGGGACATGCCCACGGGACCATGGCAGAGTGGAGCCAGTACCCACTGTTCCCCTATGCCTGCTGGTGAGC AGGGAGGAACCTTCCCAATGAACAGACTGAAAGAAAATTGTAAATGAGAACAGATTTGTTCTGGGGTGCTAACCTTGAA GCCTTGTCTATAGTAGGCAAAGAGGCATTGCTGCAGATGGTGGCATGGGACGCCTTCACTTCCTTGTCTCCTTGCACAA CAACCCTCACGGTATTTCACAAGCAGCAGCCACACTGCTGGCAGTCCCAGCTGTGTCAGGGCACGTCTGGCTCAATCTG TGTGTTCTGCAGTGCTTCTTCTCCAGCAGGAATAGGAAACCACAGGAACTGTGAGAACTGCAGTGAAAGAGCTGCCGAC CTCTGTCCCAGTCCATGCTTGCATTTGGCAGCTTCCAAAATCCCTTCTTCCCAGGACACGTGTGCAAGGAGATAGGGGC TGAGGAGTTTCAGTAAGCCAGGCCAAGAAGCTGTAGAGGATTTTTGCAAGGATGAGCCAGAAAAGCAATTCCAGTGACC CCTTGAGCAGGTTTCATCACTTAGTATAGTCAAACTAAAATCTTGCCTTCTTTTCCAGGAGCATGTGACAGTAAAACAT GCAGTGGTACACGCGGCTGTGGATCATGCAGGCAGGGAAGAGCTCGTCTTCTGCACGAGAACCAGCAGCAAGGCTCTGT GTTGNGTCTGTCCCTCATGCCCACCCCTATCTCATCTCCCC
Citation	Acloque H, Wilkinson DG, Nieto MA. In situ hybridization analysis of chick embryos in whole-mount and tissue sections. Methods Cell Biol. 2008;87:169-85. doi: 10.1016/S0091-679X(08)00209-4.
Copyright	Copyright © 2013 Elsevier B.V. All rights reserved.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI NM_001030367.1

Stage

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4-6

stage 6

Early Mesoderm

Entry 6

GEISHA Id	TBX6.Lee.2020	Data Source	Publication
Complete cDNA Template Probe	show CTGGATCTCCGATGGAAGGGCTTTTGCATGCTTCAGGACATCAGACCTGCTTTTGAACTGGACTATTTTGGCTCCCTTA TTGAGAACTCTGGTGGCTCTCTCGGCTGTGCGACCTCCTAGACTCCACATTACATGGAAAAATGCAAGTTTTGCCAGAC ATTAAAGCGCCATGTGACGCACTTGCTTCCCCCAGCCTGGAGCCCTACCCGCAGAGCTCCATCACGGTCACCCTGGAGG ACATGGGTCTCTGGATGAAGTTTCATCAGATAGGGACGGAGATGATCATCACCAAATCCGGCAGACGAATGTTTCCACA ATGCAAAATCAAAGTCTCTGGCTTAATCCCCTATGCCAAGTACCTCATGCTGGTGGATTTTGTGCCTGTGGACAACTTC AGGTACAAGTGGAATAAAGATCAGTGGGAAGTTGCTGGAAAAGCAGAGCCCCAGCTCCCTTGTCGCACCTATGTCCACC CCGATTCCCCCGCTCCTGGCAGCCACTGGATGAAGGAACCTGTCTCCTTCCAGAAACTGAAGCTCACCAACAACACTCT GGATCAACATGGGCATATCATCCTGCACTCCATGCACCGTTACAAGCCTCGCTTCCACATTGTGCAGGCAGATGACCTC TTCAGTGTTCGCTGGAGTATATTCCAAGTCTTCAGCTTCCCTGAGACTGTCTTCACTTCTGTTACTGCCTACCAGAATG AGCAGATCACAAAGCTGAAGATTGACAACAATCCATTTGCTAAAGGTTTCCGGGAGCATGGGAAGAACACTCGAAGGGA AGGACGAGCCAAATCCCAGAAGCCAAGTCCAGCCAAGGGCCAGAAGAGAAAGCTGCCAGAGGAAAAGGAGTCTGGTGCT GAGGAACGTGATTTTGAGAAAGATGAGAATGTGGATGTGAAGGAAGAGAGTAACCCCATTGTGGTCAGCAGTGGGTACC CCTTCTGGATCTCAGAGCAGAACAGCAGCCATGCCTTTCCTGCAGCATCGCCGGCGCCAGCCGAACAGAGGGAAGGTCC AGCCAGAGAGCAGCAAGTGCCTACACCATCCTACCAGACCTACCGGTTCCACGAAGCTGGGGACAGCCAGCAGCTCCCC AGCCGCGATGTCGCTGCCTTGAACGACTTCCGAGCGAGGTGCCACCCCTTGGATCTCGCCACGGTGCCCGAGCACGACT CCAAACAGCTCCCAGAGGGCTTCACCAACCTGCCTCCGCTGCCCCCACCTCTGCCCCCTCCCCAGGACTACACTGGAGT GGTGAACATGGCTCTGGACTCAGTGGGGAAACCTGGAGCTCGAGCGCCCATGTACAGTCCTTATGGCACCGAGCAAGGC CTTGGGCAGTGGATGGTGCCACCCCACAGCCAGTACAGGGCGATGAGCTACTCGGCCTTCTCCACAGATTACAACACAC AAGGGGCTTCGGGACATGCCCACGGGACCATGGCAGAGTGGAGCCAGTACCCACTGTTCCCCTATGCCTGCTGGTGAGC AGGGAGGAACCTTCCCAATGAACAGACTGAAAGAAAATTGTAAATGAGAACAGATTTGTTCTGGGGTGCTAACCTTGAA GCCTTGTCTATAGTAGGCAAAGAGGCATTGCTGCAGATGGTGGCATGGGACGCCTTCACTTCCTTGTCTCCTTGCACAA CAACCCTCACGGTATTTCACAAGCAGCAGCCACACTGCTGGCAGTCCCAGCTGTGTCAGGGCACGTCTGGCTCAATCTG TGTGTTCTGCAGTGCTTCTTCTCCAGCAGGAATAGGAAACCACAGGAACTGTGAGAACTGCAGTGAAAGAGCTGCCGAC CTCTGTCCCAGTCCATGCTTGCATTTGGCAGCTTCCAAAATCCCTTCTTCCCAGGACACGTGTGCAAGGAGATAGGGGC TGAGGAGTTTCAGTAAGCCAGGCCAAGAAGCTGTAGAGGATTTTTGCAAGGATGAGCCAGAAAAGCAATTCCAGTGACC CCTTGAGCAGGTTTCATCACTTAGTATAGTCAAACTAAAATCTTGCCTTCTTTTCCAGGAGCATGTGACAGTAAAACAT GCAGTGGTACACGCGGCTGTGGATCATGCAGGCAGGGAAGAGCTCGTCTTCTGCACGAGAACCAGCAGCAAGGCTCTGT GTTGNGTCTGTCCCTCATGCCCACCCCTATCTCATCTCCCC
Citation	Hyung Chul Lee, Hui-Chun Lu, Mark Turmaine, Nidia M. M. Oliveira, Youwen Yang† , Irene De Almeida and Claudio D. Stern. Molecular anatomy of the pre-primitive streak chick embryo Open Biol. null. 10.1098/rsob.190299.
Copyright	Copyright © 2020 The Authors.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence was obtained from NCBI (NM_001030367.1).

Stage

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X-XIV

stage X

stage XII

stage XIV

Area Opaca
Epiblast
Kohler's Sickle

Stage EGK X-XI
Stage EGK XII-XIII
Stage EGK XIV-HH2
posterior marginal zone

all

Entry 7

GEISHA Id	TBX6.Trevers.2023	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show CTGGATCTCCGATGGAAGGGCTTTTGCATGCTTCAGGACATCAGACCTGCTTTTGAACTGGACTATTTTGGCTCCCTTA TTGAGAACTCTGGTGGCTCTCTCGGCTGTGCGACCTCCTAGACTCCACATTACATGGAAAAATGCAAGTTTTGCCAGAC ATTAAAGCGCCATGTGACGCACTTGCTTCCCCCAGCCTGGAGCCCTACCCGCAGAGCTCCATCACGGTCACCCTGGAGG ACATGGGTCTCTGGATGAAGTTTCATCAGATAGGGACGGAGATGATCATCACCAAATCCGGCAGACGAATGTTTCCACA ATGCAAAATCAAAGTCTCTGGCTTAATCCCCTATGCCAAGTACCTCATGCTGGTGGATTTTGTGCCTGTGGACAACTTC AGGTACAAGTGGAATAAAGATCAGTGGGAAGTTGCTGGAAAAGCAGAGCCCCAGCTCCCTTGTCGCACCTATGTCCACC CCGATTCCCCCGCTCCTGGCAGCCACTGGATGAAGGAACCTGTCTCCTTCCAGAAACTGAAGCTCACCAACAACACTCT GGATCAACATGGGCATATCATCCTGCACTCCATGCACCGTTACAAGCCTCGCTTCCACATTGTGCAGGCAGATGACCTC TTCAGTGTTCGCTGGAGTATATTCCAAGTCTTCAGCTTCCCTGAGACTGTCTTCACTTCTGTTACTGCCTACCAGAATG AGCAGATCACAAAGCTGAAGATTGACAACAATCCATTTGCTAAAGGTTTCCGGGAGCATGGGAAGAACACTCGAAGGGA AGGACGAGCCAAATCCCAGAAGCCAAGTCCAGCCAAGGGCCAGAAGAGAAAGCTGCCAGAGGAAAAGGAGTCTGGTGCT GAGGAACGTGATTTTGAGAAAGATGAGAATGTGGATGTGAAGGAAGAGAGTAACCCCATTGTGGTCAGCAGTGGGTACC CCTTCTGGATCTCAGAGCAGAACAGCAGCCATGCCTTTCCTGCAGCATCGCCGGCGCCAGCCGAACAGAGGGAAGGTCC AGCCAGAGAGCAGCAAGTGCCTACACCATCCTACCAGACCTACCGGTTCCACGAAGCTGGGGACAGCCAGCAGCTCCCC AGCCGCGATGTCGCTGCCTTGAACGACTTCCGAGCGAGGTGCCACCCCTTGGATCTCGCCACGGTGCCCGAGCACGACT CCAAACAGCTCCCAGAGGGCTTCACCAACCTGCCTCCGCTGCCCCCACCTCTGCCCCCTCCCCAGGACTACACTGGAGT GGTGAACATGGCTCTGGACTCAGTGGGGAAACCTGGAGCTCGAGCGCCCATGTACAGTCCTTATGGCACCGAGCAAGGC CTTGGGCAGTGGATGGTGCCACCCCACAGCCAGTACAGGGCGATGAGCTACTCGGCCTTCTCCACAGATTACAACACAC AAGGGGCTTCGGGACATGCCCACGGGACCATGGCAGAGTGGAGCCAGTACCCACTGTTCCCCTATGCCTGCTGGTGAGC AGGGAGGAACCTTCCCAATGAACAGACTGAAAGAAAATTGTAAATGAGAACAGATTTGTTCTGGGGTGCTAACCTTGAA GCCTTGTCTATAGTAGGCAAAGAGGCATTGCTGCAGATGGTGGCATGGGACGCCTTCACTTCCTTGTCTCCTTGCACAA CAACCCTCACGGTATTTCACAAGCAGCAGCCACACTGCTGGCAGTCCCAGCTGTGTCAGGGCACGTCTGGCTCAATCTG TGTGTTCTGCAGTGCTTCTTCTCCAGCAGGAATAGGAAACCACAGGAACTGTGAGAACTGCAGTGAAAGAGCTGCCGAC CTCTGTCCCAGTCCATGCTTGCATTTGGCAGCTTCCAAAATCCCTTCTTCCCAGGACACGTGTGCAAGGAGATAGGGGC TGAGGAGTTTCAGTAAGCCAGGCCAAGAAGCTGTAGAGGATTTTTGCAAGGATGAGCCAGAAAAGCAATTCCAGTGACC CCTTGAGCAGGTTTCATCACTTAGTATAGTCAAACTAAAATCTTGCCTTCTTTTCCAGGAGCATGTGACAGTAAAACAT GCAGTGGTACACGCGGCTGTGGATCATGCAGGCAGGGAAGAGCTCGTCTTCTGCACGAGAACCAGCAGCAAGGCTCTGT GTTGNGTCTGTCCCTCATGCCCACCCCTATCTCATCTCCCC
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_001030367 ).