GEISHA - A Chicken Embryo Gene Expression Database
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FOXD3
forkhead box D3

Gene
Official SymbolFOXD3
Official Full Nameforkhead box D3
CGNC ID49481
also known asforkhead box protein D3|HNF3/FH transcription factor genesis|winged helix protein CWH-3
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_204951
PolypeptideNP_990282
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.468
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human
Mouse
Xenopus
Zebrafish
Gene Ontology
Molecular Functionsequence-specific DNA binding, sequence-specific DNA binding transcription factor activity
Biological Processchordate embryonic development, negative regulation of transcription from RNA polymerase II promoter, more...positive regulation of transcription from RNA polymerase II promoter, transcription, DNA-templated
Cellular Componentnucleus
Links to other databases
Entrez Gene395794
Ensembl Gene
KEGGgga:395794

Entry 1

GEISHA IdFoxD3.McKeown.2005Data SourcePublication
Complete cDNA Template Probeshow
GCGGGGATGACTCTATCGGGCGGCGGCAGCGATATGTCCGGCCAGACCGCGCTGGCGGCCGAGGACGTGGATATCGACG
TGGTGGGCGAGGGAGACGACGCGCCGGGCAAGGACGGGGACGGCGAGGCCCGCAGCCCCGCCGCGCTGCCGCTGCCGCT
GGACGAGGCGGCGGAGCCCGGCGAGCCGGAGCGGGCGGCGAGACGGGCAGCAGCGGCACGGCAGCCCGGCCCCGGCCGG
CCCGAGGGCGGCAGAGGCGGCGGCGGCGGCGGCGGCGGCGGCGAGGAGGGGGCGAGCGGCGGGGGAGCGGCGGCGGCGG
CGGCGGCGGGGCAGAGCAAGCCGAAGAGCAGCCTGGTGAAGCCGCCCTACTCGTACATCGCGCTCATCACCATGGCCAT
CCTGCAGAGCCCGCAGAAGAAGCTGACGCTCAGCGGCATCTGCGAGTTCATCAGCAACCGCTTCCCCTACTACCGGGAG
AAGTTCCCCGCCTGGCAGAACAGCATCCGCCACAACCTCTCGCTCAACGACTGCTTCGTGAAGATCCCCCGCGAGCCCG
GCAACCCCGGGAAGGGCAACTACTGGACGCTGGACCCGCAGTCTGAGGACATGTTCGACAACGGCAGCTTCCTGCGGCG
GAGGAAGCGCTTCAAGCGGCACCAGCAGGAGCACCTGCGGGACCAGACGGCGCTCATGATGCAGGGCTTCGGCGCCTAC
GGGCTGGCCGGGCCCTACGGCCGCCCCTACGGGCTGCCCCCCGGCGCCTACCCGCACCCCGCCGCTCTGCAGTACCCCT
ACATCCCGCCCGTCGGGCCCATGCTGCCGCCCGCGTGCCCGCTGCTGCCGTCGGGCGAGCTGAGCCGCAAAGCCTTCAA
CGCGCAGCTCGGGCCCAGCCTGCAGCTGCAGCTCAGCAGTTTGGGGGCGGCGGGCTCCATCGTGAAATCCGAGCCCAGC
AGCCGCCCCTCGTTCAGCATCGAGAACATCATCGGCGGCCCCGCCGCCAGCTCGGCGCCCAGCGCGCAGACTTTCCTGC
GGCCGCCCGTCACCGTGCAGTCGGGCCTGGTGGCGCACCAGCCGCTGGCGTTAGCCAGGACCACCGCGGCCATCGCGCC
CATCCTCAGCGTGCCTACCAACATCATCGCGGGGCAGTTCCTGCAGCCCCCCGCCGCCGTGCAGGCCAAGTGGCCGGCG
CAGTGACCGCGCGGTGACCCCCGGAGCGGCGGCGACCCCCGGAGCGGCGCGGCGACCCCCCGGACGTATCTCTGGGAAA
CGGCGGAGGTCGCTTTCGGGGTTTTTATTTTTCTAACAGAGCGAAGTGACGGTCGCGTTTAGGAGCCGGGAGGGCTTTC
GCTTTTTTTGAAGGTTCCGGCGCTCCGAGCGGTTTTATCCGAAATAAGCGAACGAACGGGGGGAAAAAAATGTATAAAA
ATATTAATAATAAGCGGGGGAAATTTTAAATATTAAACGAACG
CitationMcKeown S, Lee V, Bronner-Fraser M, Newgreen D, Farlie P. Sox10 Overexpression Induces Neural Crest-Like Cells From All Dorsoventral Levels of the Neural Tube but Inhibits Differentiation. Dev Dyn. 2005 Jun;233(2):430-44.
CopyrightCopyright © 2005 Wiley-Liss, Inc.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_204951). Plasmid documented in Dottori et al., 2001
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-10
stage 10
Neural Crest
 

Entry 2

GEISHA IdFOXD3.Schmidt.2007Data SourcePublication
Complete cDNA Template Probeshow
GCGGGGATGACTCTATCGGGCGGCGGCAGCGATATGTCCGGCCAGACCGCGCTGGCGGCCGAGGACGTGGATATCGACG
TGGTGGGCGAGGGAGACGACGCGCCGGGCAAGGACGGGGACGGCGAGGCCCGCAGCCCCGCCGCGCTGCCGCTGCCGCT
GGACGAGGCGGCGGAGCCCGGCGAGCCGGAGCGGGCGGCGAGACGGGCAGCAGCGGCACGGCAGCCCGGCCCCGGCCGG
CCCGAGGGCGGCAGAGGCGGCGGCGGCGGCGGCGGCGGCGGCGAGGAGGGGGCGAGCGGCGGGGGAGCGGCGGCGGCGG
CGGCGGCGGGGCAGAGCAAGCCGAAGAGCAGCCTGGTGAAGCCGCCCTACTCGTACATCGCGCTCATCACCATGGCCAT
CCTGCAGAGCCCGCAGAAGAAGCTGACGCTCAGCGGCATCTGCGAGTTCATCAGCAACCGCTTCCCCTACTACCGGGAG
AAGTTCCCCGCCTGGCAGAACAGCATCCGCCACAACCTCTCGCTCAACGACTGCTTCGTGAAGATCCCCCGCGAGCCCG
GCAACCCCGGGAAGGGCAACTACTGGACGCTGGACCCGCAGTCTGAGGACATGTTCGACAACGGCAGCTTCCTGCGGCG
GAGGAAGCGCTTCAAGCGGCACCAGCAGGAGCACCTGCGGGACCAGACGGCGCTCATGATGCAGGGCTTCGGCGCCTAC
GGGCTGGCCGGGCCCTACGGCCGCCCCTACGGGCTGCCCCCCGGCGCCTACCCGCACCCCGCCGCTCTGCAGTACCCCT
ACATCCCGCCCGTCGGGCCCATGCTGCCGCCCGCGTGCCCGCTGCTGCCGTCGGGCGAGCTGAGCCGCAAAGCCTTCAA
CGCGCAGCTCGGGCCCAGCCTGCAGCTGCAGCTCAGCAGTTTGGGGGCGGCGGGCTCCATCGTGAAATCCGAGCCCAGC
AGCCGCCCCTCGTTCAGCATCGAGAACATCATCGGCGGCCCCGCCGCCAGCTCGGCGCCCAGCGCGCAGACTTTCCTGC
GGCCGCCCGTCACCGTGCAGTCGGGCCTGGTGGCGCACCAGCCGCTGGCGTTAGCCAGGACCACCGCGGCCATCGCGCC
CATCCTCAGCGTGCCTACCAACATCATCGCGGGGCAGTTCCTGCAGCCCCCCGCCGCCGTGCAGGCCAAGTGGCCGGCG
CAGTGACCGCGCGGTGACCCCCGGAGCGGCGGCGACCCCCGGAGCGGCGCGGCGACCCCCCGGACGTATCTCTGGGAAA
CGGCGGAGGTCGCTTTCGGGGTTTTTATTTTTCTAACAGAGCGAAGTGACGGTCGCGTTTAGGAGCCGGGAGGGCTTTC
GCTTTTTTTGAAGGTTCCGGCGCTCCGAGCGGTTTTATCCGAAATAAGCGAACGAACGGGGGGAAAAAAATGTATAAAA
ATATTAATAATAAGCGGGGGAAATTTTAAATATTAAACGAACG
CitationSchmidt C, McGonnell IM, Allen S, Otto A, Patel K. Wnt6 controls amniote neural crest induction through the non-canonical signaling pathway.Dev Dyn. 2007 Sep;236(9):2502-11.
CopyrightCopyright © 2007 Wiley-Liss, Inc.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204951).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-18
stage 18
stage 18
stage 18
Neural Crest
Neural Plate/Tube
 

Entry 3

GEISHA IdFOXD3.Jin.2001Data SourcePublication
Complete cDNA Template Probeshow
GCGGGGATGACTCTATCGGGCGGCGGCAGCGATATGTCCGGCCAGACCGCGCTGGCGGCCGAGGACGTGGATATCGACG
TGGTGGGCGAGGGAGACGACGCGCCGGGCAAGGACGGGGACGGCGAGGCCCGCAGCCCCGCCGCGCTGCCGCTGCCGCT
GGACGAGGCGGCGGAGCCCGGCGAGCCGGAGCGGGCGGCGAGACGGGCAGCAGCGGCACGGCAGCCCGGCCCCGGCCGG
CCCGAGGGCGGCAGAGGCGGCGGCGGCGGCGGCGGCGGCGGCGAGGAGGGGGCGAGCGGCGGGGGAGCGGCGGCGGCGG
CGGCGGCGGGGCAGAGCAAGCCGAAGAGCAGCCTGGTGAAGCCGCCCTACTCGTACATCGCGCTCATCACCATGGCCAT
CCTGCAGAGCCCGCAGAAGAAGCTGACGCTCAGCGGCATCTGCGAGTTCATCAGCAACCGCTTCCCCTACTACCGGGAG
AAGTTCCCCGCCTGGCAGAACAGCATCCGCCACAACCTCTCGCTCAACGACTGCTTCGTGAAGATCCCCCGCGAGCCCG
GCAACCCCGGGAAGGGCAACTACTGGACGCTGGACCCGCAGTCTGAGGACATGTTCGACAACGGCAGCTTCCTGCGGCG
GAGGAAGCGCTTCAAGCGGCACCAGCAGGAGCACCTGCGGGACCAGACGGCGCTCATGATGCAGGGCTTCGGCGCCTAC
GGGCTGGCCGGGCCCTACGGCCGCCCCTACGGGCTGCCCCCCGGCGCCTACCCGCACCCCGCCGCTCTGCAGTACCCCT
ACATCCCGCCCGTCGGGCCCATGCTGCCGCCCGCGTGCCCGCTGCTGCCGTCGGGCGAGCTGAGCCGCAAAGCCTTCAA
CGCGCAGCTCGGGCCCAGCCTGCAGCTGCAGCTCAGCAGTTTGGGGGCGGCGGGCTCCATCGTGAAATCCGAGCCCAGC
AGCCGCCCCTCGTTCAGCATCGAGAACATCATCGGCGGCCCCGCCGCCAGCTCGGCGCCCAGCGCGCAGACTTTCCTGC
GGCCGCCCGTCACCGTGCAGTCGGGCCTGGTGGCGCACCAGCCGCTGGCGTTAGCCAGGACCACCGCGGCCATCGCGCC
CATCCTCAGCGTGCCTACCAACATCATCGCGGGGCAGTTCCTGCAGCCCCCCGCCGCCGTGCAGGCCAAGTGGCCGGCG
CAGTGACCGCGCGGTGACCCCCGGAGCGGCGGCGACCCCCGGAGCGGCGCGGCGACCCCCCGGACGTATCTCTGGGAAA
CGGCGGAGGTCGCTTTCGGGGTTTTTATTTTTCTAACAGAGCGAAGTGACGGTCGCGTTTAGGAGCCGGGAGGGCTTTC
GCTTTTTTTGAAGGTTCCGGCGCTCCGAGCGGTTTTATCCGAAATAAGCGAACGAACGGGGGGAAAAAAATGTATAAAA
ATATTAATAATAAGCGGGGGAAATTTTAAATATTAAACGAACG
CitationJin EJ, Erickson CA, Takada S, Burrus LW (2001). Wnt and BMP signaling govern lineage segregation of melanocytes in the avian embryo. Dev Biol. 2001 May 1;233(1):22-37.
CopyrightCopyright © 2001 Academic Press. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204951).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13
stage 13
stage 13
Neural Crest
 

Entry 4

GEISHA IdFOXD3.Khudyakov.2009Data SourcePublication
Complete cDNA Template Probeshow
GCGGGGATGACTCTATCGGGCGGCGGCAGCGATATGTCCGGCCAGACCGCGCTGGCGGCCGAGGACGTGGATATCGACG
TGGTGGGCGAGGGAGACGACGCGCCGGGCAAGGACGGGGACGGCGAGGCCCGCAGCCCCGCCGCGCTGCCGCTGCCGCT
GGACGAGGCGGCGGAGCCCGGCGAGCCGGAGCGGGCGGCGAGACGGGCAGCAGCGGCACGGCAGCCCGGCCCCGGCCGG
CCCGAGGGCGGCAGAGGCGGCGGCGGCGGCGGCGGCGGCGGCGAGGAGGGGGCGAGCGGCGGGGGAGCGGCGGCGGCGG
CGGCGGCGGGGCAGAGCAAGCCGAAGAGCAGCCTGGTGAAGCCGCCCTACTCGTACATCGCGCTCATCACCATGGCCAT
CCTGCAGAGCCCGCAGAAGAAGCTGACGCTCAGCGGCATCTGCGAGTTCATCAGCAACCGCTTCCCCTACTACCGGGAG
AAGTTCCCCGCCTGGCAGAACAGCATCCGCCACAACCTCTCGCTCAACGACTGCTTCGTGAAGATCCCCCGCGAGCCCG
GCAACCCCGGGAAGGGCAACTACTGGACGCTGGACCCGCAGTCTGAGGACATGTTCGACAACGGCAGCTTCCTGCGGCG
GAGGAAGCGCTTCAAGCGGCACCAGCAGGAGCACCTGCGGGACCAGACGGCGCTCATGATGCAGGGCTTCGGCGCCTAC
GGGCTGGCCGGGCCCTACGGCCGCCCCTACGGGCTGCCCCCCGGCGCCTACCCGCACCCCGCCGCTCTGCAGTACCCCT
ACATCCCGCCCGTCGGGCCCATGCTGCCGCCCGCGTGCCCGCTGCTGCCGTCGGGCGAGCTGAGCCGCAAAGCCTTCAA
CGCGCAGCTCGGGCCCAGCCTGCAGCTGCAGCTCAGCAGTTTGGGGGCGGCGGGCTCCATCGTGAAATCCGAGCCCAGC
AGCCGCCCCTCGTTCAGCATCGAGAACATCATCGGCGGCCCCGCCGCCAGCTCGGCGCCCAGCGCGCAGACTTTCCTGC
GGCCGCCCGTCACCGTGCAGTCGGGCCTGGTGGCGCACCAGCCGCTGGCGTTAGCCAGGACCACCGCGGCCATCGCGCC
CATCCTCAGCGTGCCTACCAACATCATCGCGGGGCAGTTCCTGCAGCCCCCCGCCGCCGTGCAGGCCAAGTGGCCGGCG
CAGTGACCGCGCGGTGACCCCCGGAGCGGCGGCGACCCCCGGAGCGGCGCGGCGACCCCCCGGACGTATCTCTGGGAAA
CGGCGGAGGTCGCTTTCGGGGTTTTTATTTTTCTAACAGAGCGAAGTGACGGTCGCGTTTAGGAGCCGGGAGGGCTTTC
GCTTTTTTTGAAGGTTCCGGCGCTCCGAGCGGTTTTATCCGAAATAAGCGAACGAACGGGGGGAAAAAAATGTATAAAA
ATATTAATAATAAGCGGGGGAAATTTTAAATATTAAACGAACG
CitationKhudyakov J, Bronner-Fraser M. Comprehensive spatiotemporal analysis of early chick neural crest network genes. Dev Dyn. 2009 Mar;238(3):716-23.
CopyrightPublished Online: 22 Feb 2009 Copyright © 2009 Wiley-Liss, Inc.
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204951).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
stage 4
stage 4
stage 5
stage 6
Neural Plate/Tube
Notochord
anterior neural folds
7-10
stage 7
stage 7
stage 8
stage 9
stage 10
stage 10
Neural Crest
Neural Plate/Tube
Notochord
anterior neural folds

Entry 5

GEISHA IdFOXD3.Coles.2007Data SourcePublication
Complete cDNA Template Probeshow
GCGGGGATGACTCTATCGGGCGGCGGCAGCGATATGTCCGGCCAGACCGCGCTGGCGGCCGAGGACGTGGATATCGACG
TGGTGGGCGAGGGAGACGACGCGCCGGGCAAGGACGGGGACGGCGAGGCCCGCAGCCCCGCCGCGCTGCCGCTGCCGCT
GGACGAGGCGGCGGAGCCCGGCGAGCCGGAGCGGGCGGCGAGACGGGCAGCAGCGGCACGGCAGCCCGGCCCCGGCCGG
CCCGAGGGCGGCAGAGGCGGCGGCGGCGGCGGCGGCGGCGGCGAGGAGGGGGCGAGCGGCGGGGGAGCGGCGGCGGCGG
CGGCGGCGGGGCAGAGCAAGCCGAAGAGCAGCCTGGTGAAGCCGCCCTACTCGTACATCGCGCTCATCACCATGGCCAT
CCTGCAGAGCCCGCAGAAGAAGCTGACGCTCAGCGGCATCTGCGAGTTCATCAGCAACCGCTTCCCCTACTACCGGGAG
AAGTTCCCCGCCTGGCAGAACAGCATCCGCCACAACCTCTCGCTCAACGACTGCTTCGTGAAGATCCCCCGCGAGCCCG
GCAACCCCGGGAAGGGCAACTACTGGACGCTGGACCCGCAGTCTGAGGACATGTTCGACAACGGCAGCTTCCTGCGGCG
GAGGAAGCGCTTCAAGCGGCACCAGCAGGAGCACCTGCGGGACCAGACGGCGCTCATGATGCAGGGCTTCGGCGCCTAC
GGGCTGGCCGGGCCCTACGGCCGCCCCTACGGGCTGCCCCCCGGCGCCTACCCGCACCCCGCCGCTCTGCAGTACCCCT
ACATCCCGCCCGTCGGGCCCATGCTGCCGCCCGCGTGCCCGCTGCTGCCGTCGGGCGAGCTGAGCCGCAAAGCCTTCAA
CGCGCAGCTCGGGCCCAGCCTGCAGCTGCAGCTCAGCAGTTTGGGGGCGGCGGGCTCCATCGTGAAATCCGAGCCCAGC
AGCCGCCCCTCGTTCAGCATCGAGAACATCATCGGCGGCCCCGCCGCCAGCTCGGCGCCCAGCGCGCAGACTTTCCTGC
GGCCGCCCGTCACCGTGCAGTCGGGCCTGGTGGCGCACCAGCCGCTGGCGTTAGCCAGGACCACCGCGGCCATCGCGCC
CATCCTCAGCGTGCCTACCAACATCATCGCGGGGCAGTTCCTGCAGCCCCCCGCCGCCGTGCAGGCCAAGTGGCCGGCG
CAGTGACCGCGCGGTGACCCCCGGAGCGGCGGCGACCCCCGGAGCGGCGCGGCGACCCCCCGGACGTATCTCTGGGAAA
CGGCGGAGGTCGCTTTCGGGGTTTTTATTTTTCTAACAGAGCGAAGTGACGGTCGCGTTTAGGAGCCGGGAGGGCTTTC
GCTTTTTTTGAAGGTTCCGGCGCTCCGAGCGGTTTTATCCGAAATAAGCGAACGAACGGGGGGAAAAAAATGTATAAAA
ATATTAATAATAAGCGGGGGAAATTTTAAATATTAAACGAACG
CitationColes EG, Taneyhill LA, Bronner-Fraser M. A critical role for Cadherin6B in regulating avian neural crest emigration. Dev Biol. 2007 Dec 15;312(2):533-44. Epub 2007 Oct 5.
CopyrightCopyright © 2007 Elsevier Inc. All rights reserved.
CommentsInsufficient information provided in publication to verify exact sequence to synthesize probe. Sequence below was obtained from NCBI (NM_204951).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-10
stage 10
stage 10
Ectoderm
Neural Crest
Neural Plate/Tube
 

Entry 6

GEISHA IdFOXD3.Taneyhill.2005Data SourcePublication
Complete cDNA Template Probeshow
GCGGGGATGACTCTATCGGGCGGCGGCAGCGATATGTCCGGCCAGACCGCGCTGGCGGCCGAGGACGTGGATATCGACG
TGGTGGGCGAGGGAGACGACGCGCCGGGCAAGGACGGGGACGGCGAGGCCCGCAGCCCCGCCGCGCTGCCGCTGCCGCT
GGACGAGGCGGCGGAGCCCGGCGAGCCGGAGCGGGCGGCGAGACGGGCAGCAGCGGCACGGCAGCCCGGCCCCGGCCGG
CCCGAGGGCGGCAGAGGCGGCGGCGGCGGCGGCGGCGGCGGCGAGGAGGGGGCGAGCGGCGGGGGAGCGGCGGCGGCGG
CGGCGGCGGGGCAGAGCAAGCCGAAGAGCAGCCTGGTGAAGCCGCCCTACTCGTACATCGCGCTCATCACCATGGCCAT
CCTGCAGAGCCCGCAGAAGAAGCTGACGCTCAGCGGCATCTGCGAGTTCATCAGCAACCGCTTCCCCTACTACCGGGAG
AAGTTCCCCGCCTGGCAGAACAGCATCCGCCACAACCTCTCGCTCAACGACTGCTTCGTGAAGATCCCCCGCGAGCCCG
GCAACCCCGGGAAGGGCAACTACTGGACGCTGGACCCGCAGTCTGAGGACATGTTCGACAACGGCAGCTTCCTGCGGCG
GAGGAAGCGCTTCAAGCGGCACCAGCAGGAGCACCTGCGGGACCAGACGGCGCTCATGATGCAGGGCTTCGGCGCCTAC
GGGCTGGCCGGGCCCTACGGCCGCCCCTACGGGCTGCCCCCCGGCGCCTACCCGCACCCCGCCGCTCTGCAGTACCCCT
ACATCCCGCCCGTCGGGCCCATGCTGCCGCCCGCGTGCCCGCTGCTGCCGTCGGGCGAGCTGAGCCGCAAAGCCTTCAA
CGCGCAGCTCGGGCCCAGCCTGCAGCTGCAGCTCAGCAGTTTGGGGGCGGCGGGCTCCATCGTGAAATCCGAGCCCAGC
AGCCGCCCCTCGTTCAGCATCGAGAACATCATCGGCGGCCCCGCCGCCAGCTCGGCGCCCAGCGCGCAGACTTTCCTGC
GGCCGCCCGTCACCGTGCAGTCGGGCCTGGTGGCGCACCAGCCGCTGGCGTTAGCCAGGACCACCGCGGCCATCGCGCC
CATCCTCAGCGTGCCTACCAACATCATCGCGGGGCAGTTCCTGCAGCCCCCCGCCGCCGTGCAGGCCAAGTGGCCGGCG
CAGTGACCGCGCGGTGACCCCCGGAGCGGCGGCGACCCCCGGAGCGGCGCGGCGACCCCCCGGACGTATCTCTGGGAAA
CGGCGGAGGTCGCTTTCGGGGTTTTTATTTTTCTAACAGAGCGAAGTGACGGTCGCGTTTAGGAGCCGGGAGGGCTTTC
GCTTTTTTTGAAGGTTCCGGCGCTCCGAGCGGTTTTATCCGAAATAAGCGAACGAACGGGGGGAAAAAAATGTATAAAA
ATATTAATAATAAGCGGGGGAAATTTTAAATATTAAACGAACG
CitationTaneyhill LA, Bronner-Fraser M. Dynamic alterations in gene expression after Wnt-mediated induction of avian neural crest. Mol Biol Cell. 2005 Nov;16(11):5283-93. Epub 2005 Aug 31.
CopyrightCopyright 2004, MBC Online by The American Society for Cell Biology.
CommentsInsufficient information provided in publication to verify exact sequence to synthesize probe. Sequence below was obtained from NCBI (NM_204951).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 10
Neural Crest
Neural Plate/Tube
 
13-16
stage 16
stage 16
stage 16
stage 16
Neural Crest
Neural Plate/Tube
 

Entry 7

GEISHA IdFOXD3.Blentic.2008Data SourcePublication
Complete cDNA Template Probeshow
GCGGGGATGACTCTATCGGGCGGCGGCAGCGATATGTCCGGCCAGACCGCGCTGGCGGCCGAGGACGTGGATATCGACG
TGGTGGGCGAGGGAGACGACGCGCCGGGCAAGGACGGGGACGGCGAGGCCCGCAGCCCCGCCGCGCTGCCGCTGCCGCT
GGACGAGGCGGCGGAGCCCGGCGAGCCGGAGCGGGCGGCGAGACGGGCAGCAGCGGCACGGCAGCCCGGCCCCGGCCGG
CCCGAGGGCGGCAGAGGCGGCGGCGGCGGCGGCGGCGGCGGCGAGGAGGGGGCGAGCGGCGGGGGAGCGGCGGCGGCGG
CGGCGGCGGGGCAGAGCAAGCCGAAGAGCAGCCTGGTGAAGCCGCCCTACTCGTACATCGCGCTCATCACCATGGCCAT
CCTGCAGAGCCCGCAGAAGAAGCTGACGCTCAGCGGCATCTGCGAGTTCATCAGCAACCGCTTCCCCTACTACCGGGAG
AAGTTCCCCGCCTGGCAGAACAGCATCCGCCACAACCTCTCGCTCAACGACTGCTTCGTGAAGATCCCCCGCGAGCCCG
GCAACCCCGGGAAGGGCAACTACTGGACGCTGGACCCGCAGTCTGAGGACATGTTCGACAACGGCAGCTTCCTGCGGCG
GAGGAAGCGCTTCAAGCGGCACCAGCAGGAGCACCTGCGGGACCAGACGGCGCTCATGATGCAGGGCTTCGGCGCCTAC
GGGCTGGCCGGGCCCTACGGCCGCCCCTACGGGCTGCCCCCCGGCGCCTACCCGCACCCCGCCGCTCTGCAGTACCCCT
ACATCCCGCCCGTCGGGCCCATGCTGCCGCCCGCGTGCCCGCTGCTGCCGTCGGGCGAGCTGAGCCGCAAAGCCTTCAA
CGCGCAGCTCGGGCCCAGCCTGCAGCTGCAGCTCAGCAGTTTGGGGGCGGCGGGCTCCATCGTGAAATCCGAGCCCAGC
AGCCGCCCCTCGTTCAGCATCGAGAACATCATCGGCGGCCCCGCCGCCAGCTCGGCGCCCAGCGCGCAGACTTTCCTGC
GGCCGCCCGTCACCGTGCAGTCGGGCCTGGTGGCGCACCAGCCGCTGGCGTTAGCCAGGACCACCGCGGCCATCGCGCC
CATCCTCAGCGTGCCTACCAACATCATCGCGGGGCAGTTCCTGCAGCCCCCCGCCGCCGTGCAGGCCAAGTGGCCGGCG
CAGTGACCGCGCGGTGACCCCCGGAGCGGCGGCGACCCCCGGAGCGGCGCGGCGACCCCCCGGACGTATCTCTGGGAAA
CGGCGGAGGTCGCTTTCGGGGTTTTTATTTTTCTAACAGAGCGAAGTGACGGTCGCGTTTAGGAGCCGGGAGGGCTTTC
GCTTTTTTTGAAGGTTCCGGCGCTCCGAGCGGTTTTATCCGAAATAAGCGAACGAACGGGGGGAAAAAAATGTATAAAA
ATATTAATAATAAGCGGGGGAAATTTTAAATATTAAACGAACG
CitationBlentic A, Tandon P, Payton S, Walshe J, Carney T, Kelsh RN, Mason I, Graham A. The emergence of ectomesenchyme. Dev Dyn. 2008 Mar;237(3):592-601.
CopyrightCopyright © 2008 John Wiley & Sons, Inc. All Rights Reserved.
Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. The sequence below was obtained from NCBI (acc # NM_204951.1)
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 10
stage 10
stage 11
Hindbrain
Midbrain
Neural Crest
Rhombomeres
 
13-18
stage 14
stage 15
stage 15
Neural Crest
Neural Plate/Tube
 
19
stage 19
Neural Crest
 

Entry 8

GEISHA IdFOXD3.Groysman.2008Data SourcePublication
Complete cDNA Template Probeshow
GCGGGGATGACTCTATCGGGCGGCGGCAGCGATATGTCCGGCCAGACCGCGCTGGCGGCCGAGGACGTGGATATCGACG
TGGTGGGCGAGGGAGACGACGCGCCGGGCAAGGACGGGGACGGCGAGGCCCGCAGCCCCGCCGCGCTGCCGCTGCCGCT
GGACGAGGCGGCGGAGCCCGGCGAGCCGGAGCGGGCGGCGAGACGGGCAGCAGCGGCACGGCAGCCCGGCCCCGGCCGG
CCCGAGGGCGGCAGAGGCGGCGGCGGCGGCGGCGGCGGCGGCGAGGAGGGGGCGAGCGGCGGGGGAGCGGCGGCGGCGG
CGGCGGCGGGGCAGAGCAAGCCGAAGAGCAGCCTGGTGAAGCCGCCCTACTCGTACATCGCGCTCATCACCATGGCCAT
CCTGCAGAGCCCGCAGAAGAAGCTGACGCTCAGCGGCATCTGCGAGTTCATCAGCAACCGCTTCCCCTACTACCGGGAG
AAGTTCCCCGCCTGGCAGAACAGCATCCGCCACAACCTCTCGCTCAACGACTGCTTCGTGAAGATCCCCCGCGAGCCCG
GCAACCCCGGGAAGGGCAACTACTGGACGCTGGACCCGCAGTCTGAGGACATGTTCGACAACGGCAGCTTCCTGCGGCG
GAGGAAGCGCTTCAAGCGGCACCAGCAGGAGCACCTGCGGGACCAGACGGCGCTCATGATGCAGGGCTTCGGCGCCTAC
GGGCTGGCCGGGCCCTACGGCCGCCCCTACGGGCTGCCCCCCGGCGCCTACCCGCACCCCGCCGCTCTGCAGTACCCCT
ACATCCCGCCCGTCGGGCCCATGCTGCCGCCCGCGTGCCCGCTGCTGCCGTCGGGCGAGCTGAGCCGCAAAGCCTTCAA
CGCGCAGCTCGGGCCCAGCCTGCAGCTGCAGCTCAGCAGTTTGGGGGCGGCGGGCTCCATCGTGAAATCCGAGCCCAGC
AGCCGCCCCTCGTTCAGCATCGAGAACATCATCGGCGGCCCCGCCGCCAGCTCGGCGCCCAGCGCGCAGACTTTCCTGC
GGCCGCCCGTCACCGTGCAGTCGGGCCTGGTGGCGCACCAGCCGCTGGCGTTAGCCAGGACCACCGCGGCCATCGCGCC
CATCCTCAGCGTGCCTACCAACATCATCGCGGGGCAGTTCCTGCAGCCCCCCGCCGCCGTGCAGGCCAAGTGGCCGGCG
CAGTGACCGCGCGGTGACCCCCGGAGCGGCGGCGACCCCCGGAGCGGCGCGGCGACCCCCCGGACGTATCTCTGGGAAA
CGGCGGAGGTCGCTTTCGGGGTTTTTATTTTTCTAACAGAGCGAAGTGACGGTCGCGTTTAGGAGCCGGGAGGGCTTTC
GCTTTTTTTGAAGGTTCCGGCGCTCCGAGCGGTTTTATCCGAAATAAGCGAACGAACGGGGGGAAAAAAATGTATAAAA
ATATTAATAATAAGCGGGGGAAATTTTAAATATTAAACGAACG
CitationGroysman M, Shoval I, Kalcheim C. A negative modulatory role for rho and rho-associated kinase signaling in delamination of neural crest cells. Neural Dev. 2008 Oct 22;3:27.
CopyrightCopyright © 2008 Groysman et al.; licensee BioMed Central Ltd.
CommentsAs insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI NM_204951
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
13-15
stage 15
Neural Crest
 

Entry 9

GEISHA IdFoxD3.Hu.2012Data SourcePublication
Complete cDNA Template Probeshow
GCGGGGATGACTCTATCGGGCGGCGGCAGCGATATGTCCGGCCAGACCGCGCTGGCGGCCGAGGACGTGGATATCGACG
TGGTGGGCGAGGGAGACGACGCGCCGGGCAAGGACGGGGACGGCGAGGCCCGCAGCCCCGCCGCGCTGCCGCTGCCGCT
GGACGAGGCGGCGGAGCCCGGCGAGCCGGAGCGGGCGGCGAGACGGGCAGCAGCGGCACGGCAGCCCGGCCCCGGCCGG
CCCGAGGGCGGCAGAGGCGGCGGCGGCGGCGGCGGCGGCGGCGAGGAGGGGGCGAGCGGCGGGGGAGCGGCGGCGGCGG
CGGCGGCGGGGCAGAGCAAGCCGAAGAGCAGCCTGGTGAAGCCGCCCTACTCGTACATCGCGCTCATCACCATGGCCAT
CCTGCAGAGCCCGCAGAAGAAGCTGACGCTCAGCGGCATCTGCGAGTTCATCAGCAACCGCTTCCCCTACTACCGGGAG
AAGTTCCCCGCCTGGCAGAACAGCATCCGCCACAACCTCTCGCTCAACGACTGCTTCGTGAAGATCCCCCGCGAGCCCG
GCAACCCCGGGAAGGGCAACTACTGGACGCTGGACCCGCAGTCTGAGGACATGTTCGACAACGGCAGCTTCCTGCGGCG
GAGGAAGCGCTTCAAGCGGCACCAGCAGGAGCACCTGCGGGACCAGACGGCGCTCATGATGCAGGGCTTCGGCGCCTAC
GGGCTGGCCGGGCCCTACGGCCGCCCCTACGGGCTGCCCCCCGGCGCCTACCCGCACCCCGCCGCTCTGCAGTACCCCT
ACATCCCGCCCGTCGGGCCCATGCTGCCGCCCGCGTGCCCGCTGCTGCCGTCGGGCGAGCTGAGCCGCAAAGCCTTCAA
CGCGCAGCTCGGGCCCAGCCTGCAGCTGCAGCTCAGCAGTTTGGGGGCGGCGGGCTCCATCGTGAAATCCGAGCCCAGC
AGCCGCCCCTCGTTCAGCATCGAGAACATCATCGGCGGCCCCGCCGCCAGCTCGGCGCCCAGCGCGCAGACTTTCCTGC
GGCCGCCCGTCACCGTGCAGTCGGGCCTGGTGGCGCACCAGCCGCTGGCGTTAGCCAGGACCACCGCGGCCATCGCGCC
CATCCTCAGCGTGCCTACCAACATCATCGCGGGGCAGTTCCTGCAGCCCCCCGCCGCCGTGCAGGCCAAGTGGCCGGCG
CAGTGACCGCGCGGTGACCCCCGGAGCGGCGGCGACCCCCGGAGCGGCGCGGCGACCCCCCGGACGTATCTCTGGGAAA
CGGCGGAGGTCGCTTTCGGGGTTTTTATTTTTCTAACAGAGCGAAGTGACGGTCGCGTTTAGGAGCCGGGAGGGCTTTC
GCTTTTTTTGAAGGTTCCGGCGCTCCGAGCGGTTTTATCCGAAATAAGCGAACGAACGGGGGGAAAAAAATGTATAAAA
ATATTAATAATAAGCGGGGGAAATTTTAAATATTAAACGAACG
CitationHu N, Strobl-Mazzulla P, Sauka-Spengler T, Bronner ME. DNA methyltransferase3A as a molecular switch mediating the neural tube-to-neural crest fate transition. Genes Dev. 2012 November 1; 26(21): 2380–2385.
CopyrightCopyright © 2012 by Cold Spring Harbor Laboratory Press
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-10
stage 10
stage 10
Neural Crest
 

Entry 10

GEISHA IdFOXD3.Ferronha.2013Data SourcePublication
Complete cDNA Template Probeshow
GCGGGGATGACTCTATCGGGCGGCGGCAGCGATATGTCCGGCCAGACCGCGCTGGCGGCCGAGGACGTGGATATCGACG
TGGTGGGCGAGGGAGACGACGCGCCGGGCAAGGACGGGGACGGCGAGGCCCGCAGCCCCGCCGCGCTGCCGCTGCCGCT
GGACGAGGCGGCGGAGCCCGGCGAGCCGGAGCGGGCGGCGAGACGGGCAGCAGCGGCACGGCAGCCCGGCCCCGGCCGG
CCCGAGGGCGGCAGAGGCGGCGGCGGCGGCGGCGGCGGCGGCGAGGAGGGGGCGAGCGGCGGGGGAGCGGCGGCGGCGG
CGGCGGCGGGGCAGAGCAAGCCGAAGAGCAGCCTGGTGAAGCCGCCCTACTCGTACATCGCGCTCATCACCATGGCCAT
CCTGCAGAGCCCGCAGAAGAAGCTGACGCTCAGCGGCATCTGCGAGTTCATCAGCAACCGCTTCCCCTACTACCGGGAG
AAGTTCCCCGCCTGGCAGAACAGCATCCGCCACAACCTCTCGCTCAACGACTGCTTCGTGAAGATCCCCCGCGAGCCCG
GCAACCCCGGGAAGGGCAACTACTGGACGCTGGACCCGCAGTCTGAGGACATGTTCGACAACGGCAGCTTCCTGCGGCG
GAGGAAGCGCTTCAAGCGGCACCAGCAGGAGCACCTGCGGGACCAGACGGCGCTCATGATGCAGGGCTTCGGCGCCTAC
GGGCTGGCCGGGCCCTACGGCCGCCCCTACGGGCTGCCCCCCGGCGCCTACCCGCACCCCGCCGCTCTGCAGTACCCCT
ACATCCCGCCCGTCGGGCCCATGCTGCCGCCCGCGTGCCCGCTGCTGCCGTCGGGCGAGCTGAGCCGCAAAGCCTTCAA
CGCGCAGCTCGGGCCCAGCCTGCAGCTGCAGCTCAGCAGTTTGGGGGCGGCGGGCTCCATCGTGAAATCCGAGCCCAGC
AGCCGCCCCTCGTTCAGCATCGAGAACATCATCGGCGGCCCCGCCGCCAGCTCGGCGCCCAGCGCGCAGACTTTCCTGC
GGCCGCCCGTCACCGTGCAGTCGGGCCTGGTGGCGCACCAGCCGCTGGCGTTAGCCAGGACCACCGCGGCCATCGCGCC
CATCCTCAGCGTGCCTACCAACATCATCGCGGGGCAGTTCCTGCAGCCCCCCGCCGCCGTGCAGGCCAAGTGGCCGGCG
CAGTGACCGCGCGGTGACCCCCGGAGCGGCGGCGACCCCCGGAGCGGCGCGGCGACCCCCCGGACGTATCTCTGGGAAA
CGGCGGAGGTCGCTTTCGGGGTTTTTATTTTTCTAACAGAGCGAAGTGACGGTCGCGTTTAGGAGCCGGGAGGGCTTTC
GCTTTTTTTGAAGGTTCCGGCGCTCCGAGCGGTTTTATCCGAAATAAGCGAACGAACGGGGGGAAAAAAATGTATAAAA
ATATTAATAATAAGCGGGGGAAATTTTAAATATTAAACGAACG
CitationFerronha T, Rabadán MA, Gil-Guiñon E, Le Dréau G, de Torres C, Martí E. LMO4 is an essential cofactor in the Snail2-mediated epithelial-to-mesenchymal transition of neuroblastoma and neural crest cells. J Neurosci. 2013 Feb 13;33(7):2773-83.
CopyrightCopyright @ 2013 by the Society of Neuroscience
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (Acc. # NM_204951.1).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-10
stage 10
stage 10
Neural Crest
Control Embryo: Stage 10 embryo, 24 hour post-electroporation.

Entry 11

GEISHA IdFOXD3.Trevers.2023Data SourceGEISHA ISH Analysis
Complete cDNA Template Probeshow
CCGCGGGCGCGGAGCGGTGGAGCGGAGGGGCCCCGCGGGCGGCGGGCGGGAGGCAGCGGCGCCGCCCGAGCCCCGATGC
CCGGCGGCCGGAGCGGGGCGCGCAGCCGGAGGTGACCGGGGGGGATCCCCGGGAGCGGAGCGGGCGCGGCCCCCCCATG
CCCCGCGGGGACGGCGCCGCGGGCGGCAGCGGAGCCGCGCGGGTGTAGCGGCCCCGCGCTGGGGGAGAGGGGCGCGGGG
GCGGCCCGCGGAGCGGGGATGACTCTATCGGGCGGCGGCAGCGATATGTCCGGCCAGACCGCGCTGGCGGCCGAGGACG
TGGATATCGACGTGGTGGGCGAGGGAGACGACGCGCCGGGCAAGGACGGGGACGGCGAGGCCCGCAGCCCCGCCGCGCT
GCCGCGGCTGCCGCTGGACGAGGCGGCGGAGCCCGGCGAGCCGGGAGCGGGCGGCGAGAGCGGCAGCAGCGGCAGCGGC
AGCCCGGCCCCGGCGGGCCCCGAGGGCGGCAGAGGGGGCGGCGGCGGCGGCGGCGGCGGCGAGGAGGGGGCGAGCGGCG
GGGGAGCGGCGGCGGCGGCGGCGGCGGCGGGGCAGAGCAAGCCGAAGAGCAGCCTGGTGAAGCCGCCCTACTCGTACAT
CGCGCTCATCACCATGGCCATCCTGCAGAGCCCGCAGAAGAAGCTGACGCTCAGCGGCATCTGCGAGTTCATCAGCAAC
CGCTTCCCCTACTACCGGGAGAAGTTCCCCGCCTGGCAGAACAGCATCCGCCACAACCTCTCGCTCAACGACTGCTTCG
TGAAGATCCCCCGCGAGCCCGGCAACCCGGGCAAGGGCAACTACTGGACGCTGGACCCGCAGTCCGAGGACATGTTCGA
CAACGGCAGCTTCCTGCGGCGGAGGAAGCGCTTCAAGCGGCACCAGCAGGAGCACCTGCGGGACCAGACGGCGCTCATG
ATGCAGGGCTTCGGCGCCTACGGGCTGGCCGGGCCCTACGGCCGCCCCTACGGGCTGCCCCCCGGCGCCTACCCGCACC
CCGCCGCTCTGCAGTACCCCTACATCCCGCCCGTCGGGCCCATGCTGCCGCCCGCGGTGCCGCTGCTGCCGTCGGGCGA
GCTGAGCCGCAAAGCCTTCAACGCGCAGCTCGGGCCCAGCCTGCAGCTGCAGCTCAGCAGTTTGGGGGCGGCGGGCTCC
ATCGTGAAATCCGAGCCCAGCAGCCGCCCCTCGTTCAGCATCGAGAACATCATCGGCGGCCCCGCCGCCAGCTCGGCGC
CCAGCGCGCAGACTTTCCTGCGGCCGCCCGTCACCGTGCAGTCGGGCCTGGTGGCGCACCAGCCGCTGGCGTTAGCCAG
GACCACCGCGGCCATCGCGCCCATCCTCAGCGTGCCTACCAACATCATCGCGGGGCAGTTCCTGCAGCCCCCCGCCGCC
GTGCAGGCCAAGTGGCCGGCGCAGTGACCGCCGCACGGTGACCCCCGGAGCGGCGGCGACCCCCGGAGCGGCGGTGACC
CCCCGGACGTATCTCTGGGAAACGGCGGAGGTCGCTTTCGGGGTTTTTATTTTTCTAACAGAGCGAAGTGACGGTCGCG
TTTAGGAGCCGGGAGGGCTTTCGCTTTTTTTGAAGGTTCCGGCGCTCCGAGCGGTTTTATCCGAAATAAGCGAACGAAC
GGGGGGAAAAAAATGTATAAAAATATTAATAATAAGCGGGGGAAATTTTAAATATTAAACGAACGAACAACAACGAAAA
AATGAATTTTGGAGGAAAAAAAAAAACAAAGAAAGAAAGAAAGGAGGAAAACGCTGTCGTTCTATTATAGAAGTCTGTT
TATATATGAATGAATATATGTATTCTAAATGTTATCCCTTCGTGTTGTACACTACTTTGTAAATAAATTTTTCAAACG
CommentsInsufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_204951 ).
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
X-XIV
stage XIII
Area Pellucida
weak throughout
1-3
stage 3
Epiblast
Hensen's Node
Hensen's node and surrounding epiblast
4-6
stage 6
Head Process
Headfold
Notochord
head process / notochord / head fold
7-8
stage 8
Foregut
Headfold
Neural Plate/Tube
neural plate strongest anteriorly / head fold / foregut
all
 
  
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.468

Mouse

Emage
Eurexpress
MGI GXD

Frog

Xenbase

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFIN
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