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HOXB1 Gene Summary Expression Transcript Levels Other Species Expression JBrowse Gene Official Symbol HOXB1 Official Full Name homeobox B1 CGNC ID 10116 also known as Ghox-lab, HOXB-1, homeobox protein Hox-B1|homeobox-containing transcription factor Hoxb-1 gene type protein-coding
Genomic Map Sequence Information Gene Expression Orthology Gene Ontology Links to other databases
Entry 1 GEISHA Id W24 Data Source GEISHA ISH Analysis Forward cDNA Template Probe show GAGCAGCAGCACCTTTACGGGCAGGAGCAGCCCGGTTACTTGCCCGGGGTTTACGGCAACCTCTCGCCTTCCCTAAATG
Reverse cDNA Template Probe show GCCATTTTGCACTATCGTCGCTTTACAGGGTTTCCTACACGCTCTCCGCCTGTATTACCGATCCTGGGGGTGGGAGCGT
Entry 2 GEISHA Id Hoxb-1.Reijntjes.2004 Data Source Publication Complete cDNA Template Probe show ATGGACAATACTAGGATGAACTCCTTCTTAGAGTATGCAATTTGTAACCGTGGGACGGGCGCCTACCACCATTTAGAGC
Citation Reijntjes S, Gale E, Maden M. Generating gradients of retinoic acid in the chick embryo: Cyp26C1 expression and a comparative analysis of the Cyp26 enzymes. Dev Dyn. 2004 Jul;230(3):509-17. Copyright Wiley-Liss, Inc. 2004
Entry 3 GEISHA Id HOXB1.Bok.2005 Data Source Publication Complete cDNA Template Probe show ATGGACAATACTAGGATGAACTCCTTCTTAGAGTATGCAATTTGTAACCGTGGGACGGGCGCCTACCACCATTTAGAGC
Citation Bok J, Bronner-Fraser M, Wu DK. Role of the hindbrain in dorsoventral but not anteroposterior axial specification of the inner ear. Development. 2005 May;132(9):2115-24. Epub 2005 Mar 23. Copyright Copyright for articles in Development are retained by the authors. Permission granted by MBF. Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_001080859).
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Entry 4 GEISHA Id HOXB1.Paxton.2010 Data Source Publication Complete cDNA Template Probe show ATGGACAATACTAGGATGAACTCCTTCTTAGAGTATGCAATTTGTAACCGTGGGACGGGCGCCTACCACCATTTAGAGC
Citation Paxton CN, Bleyl SB, Chapman SC, Schoenwolf GC.
Identification of differentially expressed genes in early inner ear development. Gene Expr Patterns. 2010 Jan;10(1):31-43. Epub 2009 Nov 11.
Copyright 2009 Elsevier B.V. All rights reserved. Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # NM_001080859.1).
Entry 5 GEISHA Id HOXB1.Alev.2010 Data Source Publication Complete cDNA Template Probe show CCTCGAGACGGCTAAAACAGAAAAGTTTGGGGTGCTTTTTTTTTGTTTCCCTTTTACATTTACTCTGTGTATCTCGGAA
Citation Alev C, Wu Y, Kasukawa T, Jakt LM, Ueda HR, Sheng G. Transcriptomic landscape of the primitive streak. Development. 2010 Sep 1;137(17):2863-74. Epub 2010 Jul 28. Copyright Published by The Company of Biologists 2010. This material is protected by a copyright retained by the authors. Permission granted by Dr. G Sheng. Comments FORWARD PRIMER CCTCGAGACGGCTAAAACAG
REVERSE PRIMER ACCACAGGCTTTTCAGGATG
Entry 6 GEISHA Id HOXB1.Bothe.2011 Data Source Publication Complete cDNA Template Probe show ATGGACAATACTAGGATGAACTCCTTCTTAGAGTATGCAATTTGTAACCGTGGGACGGGCGCCTACCACCATTTAGAGC
Citation Bothe I, Tenin G, Oseni A, Dietrich S., Dynamic control of head mesoderm patterning., Development. 2011 Jul;138(13):2807-21. Copyright Permission from the authors and the Company of Biologists Ltd. Copyright held by the authors. Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. The sequence below was obtained from NCBI (acc #XM_003642793.1)
Entry 7 GEISHA Id HOXB1.Chambers.2007 Data Source Publication Complete cDNA Template Probe show ATGGACAATACTAGGATGAACTCCTTCTTAGAGTATGCAATTTGTAACCGTGGGACGGGCGCCTACCACCATTTAGAGC
Citation Chambers D, Wilson L, Maden M, Lumsden A. RALDH-independent generation of retinoic acid during vertebrate embryogenesis by CYP1B1. Development. 2007 Apr;134(7):1369-83. Copyright © 2007 Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # XM_003642793.1).
Entry 8 GEISHA Id HOXB1.Garcia-Dominguez.200 Data Source Publication Complete cDNA Template Probe show ATGGACAATACTAGGATGAACTCCTTCTTAGAGTATGCAATTTGTAACCGTGGGACGGGCGCCTACCACCATTTAGAGC
Citation Garcia-Dominguez M, Poquet C, Garel S, Charnay P. PIASxβ acts as an activator of Hoxb1 and is antagonized by Krox20 during hindbrain segmentation. EMBO J. 2006 June 7; 25(11): 24322442. Published online 2006 May 4. Copyright Copyright © 2006, European Molecular Biology Organization Comments Fig4C
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Entry 9 GEISHA Id GHOXLAB.Bell.2004 Data Source Publication Forward cDNA Template Probe show GAGCAGCAGCACCTTTACGGGCAGGAGCAGCCCGGTTACTTGCCCGGGGTTTACGGCAACCTCTCGCCTTCCCTAAATG
Reverse cDNA Template Probe show GCCATTTTGCACTATCGTCGCTTTACAGGGTTTCCTACACGCTCTCCGCCTGTATTACCGATCCTGGGGGTGGGAGCGT
Citation Bell GW, Yatskievych TA, Antin PB. GEISHA, a whole-mount in situ hybridization gene expression screen in chicken embryos. Dev Dyn. 2004 Mar;229(3):677-87. Copyright Copyright © 2004 Wiley-Liss, Inc. Comments The probe sequence below was obtained from the GEISHA database using information provided in the publication, Geisha W24.
Stage Image (click image to view full size) Location (click to highlight) Comments (click to highlight) 4 stage 4
stage 4
Primitive Streak
Entry 10 Entry 11 GEISHA Id Hoxb1.Iimura.2006 Data Source GEISHA ISH Analysis Complete cDNA Template Probe show ATGGACAATACTAGGATGAACTCCTTCTTAGAGTATGCAATTTGTAACCGTGGGACGGGCGCCTACCACCATTTAGAGC
Citation Tadahiro Iimura, Olivier Pourquié. Collinear activation of Hoxb genes during gastrulation is linked to mesoderm cell ingression. Nature. 2006 Aug 3;442(7102):568-71. Epub 2006 Jun 7. DOI: 10.1038/nature04838. Copyright Copyright © 2006 Nature Publishing Group. Comments As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence above was obtained from NCBI (accession number NM_001080859.2).
Entry 12 GEISHA Id Hoxb1.Bel-Vialar.2002 Data Source GEISHA ISH Analysis Complete cDNA Template Probe show ATGGACAATACTAGGATGAACTCCTTCTTAGAGTATGCAATTTGTAACCGTGGGACGGGCGCCTACCACCATTTAGAGC
Citation Sophie Bel-Vialar, Nobue Itasaki, Robb Krumlauf. Initiating Hox gene expression: in the early chick neural tube differential sensitivity to FGF and RA signaling subdivides the HoxB genes in two distinct groups. Development 2002 Nov;129(22):5103-15. Copyright Copyright © The Company of Biologists Limited 2002. Comments As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence above was obtained from NCBI (accession number NM_001080859.2).
Entry 13 GEISHA Id HOXB1.Trevers.2023 Data Source GEISHA ISH Analysis Complete cDNA Template Probe show GTTCGAGGGCCAGCGATGCATGGAAGGAAGTTTTACAGCTTTGACATACTATCTAAAGGTTGTAGGGCAGGCGGAATCC
Comments Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_001080859 ).
Data from NCBI Unigene EST ProfileGga.533
Mouse Frog Fruit Fly Zebra Finch Zebrafish
