Geisha

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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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HOXB7
homeobox B7

Gene

Official Symbol	HOXB7
Official Full Name	homeobox B7
CGNC ID	9975
also known as	homeobox protein Hox-B7
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	XM_003642790
Polypeptide	XP_003642838
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.11714

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human
Mouse
Xenopus
Zebrafish

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	425962
Ensembl Gene	ENSGALG00000029090
KEGG	gga:425962

Entry 1

GEISHA Id	ChEST611c8	Data Source	GEISHA ISH Analysis
Forward cDNA Template Probe	show GTAAAACCGACACCCAAATGTCGCGACCTACAAATCACCCGGCCAAATTATGAGTTCATTGTATTATGCGAATGCTTTA TTTTCTAAATATCAAGCCGCAAGTTCGGTTTTCCCATCCGGAGTCTTTCCCGAGCAAACTTCTTGCGCTTTCGCCTCCA ACACCCAACGAGCGGGCTATGGGGCCGGCTCCACGCCTCCCTTCGCCTCCTCCATGCCCGGGCTGTACTCCAGCGGCAG CGCCGTGCACCCCCAACCCCCCGGCATGTACTCCTCGGGGTACGGCCTGGAGCCCGGCTCCTTCAACATGCACTGTTCC CCCTTTGAGCAAAACCTCTCCATGATGTGCCCGGGAGATGCCTCCAAGCAGAACTGCAACAAAACGGACCAGAGGGATT CAGATTTGCAAAGCGACAGTAACTTCCGCATCTACCCCTGGATGAGGAGCACAGGCACGGACAGGAAACGCGGCCGGCA AACCTACACCAGGTATCAGACCCTGGAGCTGGAGAAGGAGTTCCACTACAACCGCTACCTGACGAGGAGGAGACGCATT GAGATCGCCCATGCTCTGTGTCTCACGGAGAGACAGATCAAAATCTGGTTCCAGAACAGGCGCATGAAGTGG

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

4-6

stage 5

Epiblast

hand transected

7-12

stage 9

stage 11

Endoderm
Extraembryonic
Neural Plate/Tube
Primitive Streak
Surface Ectoderm

hand transected

13-18

stage 16

stage 17

Lateral Plate Mesoderm
Neural Crest
Spinal Cord
Tail

19-22

stage 22

Dermatome
Myotome
Neural Crest
Spinal Cord

Entry 2

GEISHA Id	Hoxb7.Moreau.2019	Data Source	Publication
Complete cDNA Template Probe	show CTGCTCTTGTTGTTGTTTCTAACTGTTCATGCGTGGTGACAGGTTGGGAGATGTGTGGAAAGCCATCCCGAAGGGAACG CGGATGGGGCGTGGGGATGCACACACATCCCCTTGCAACTTAACCTTGGGAAAGGAGAACCGGTGCAAATCCTAACGGC ACATCCACCATTGTCTGAGCTGCTGTTCCTGCCAGTAAGACTTTATTCCTTTCTTACCCCCCACCCCTCTCCCCCCAAC CAAAAGAAAAGGAAAATTGAAGCTGATCTGGAAGGTCTCTTTGCTTCTCCAGCAGAAAGCAAATCAGCCAGCTGGTAAC GCTTTCCTATAACTGTAATTGAGTCCCGCAGAACCGCTGACGCGCTAAACAAGGGATCTGTACAGCCTTTATTTTTCGC AACAAGAAAAGCAAATGCCAGCTCAATACGAAACTCAAAGCCCGTGGCATTGGAATAAATGAGATATAGAGCTGAATGG CATTCGGGGGGGGCGAGAAAAAAAGAAGGAGCCTGGAACTATTAGAGAGAGACCGAGAGGAGCAGCGCCGCGCACCACC TCCCCCCCCCCCCCCCCTTCCCCTTCGCCTTTCTCTTTCTCCCTCGGTCTCAGCTGAAAACTGATTACAGGTTGCTTAT CGACTCCAGCACAATTTCACCCCCTTCCAGCATAGATCTTGGAGGGTTTTATATCGCATCAATTATTTATCATATTTTA TAAATCCAGCAGCACTACAATTTTTTGCCCCCGAGGAGGGAGCGGGCGGCGATTGGCGCCGCTGGAGCCACGTGCCCGC GCGTCACATGGGCCGGGAGGAAAAAGGGCTCCTTTTTGGTGTAAATCTGGACTCTAATTCCGTAATATATCACGGTACC TCGTAAAACCGACACTAAAACGTCCCGACCTACAAATCACCCGGCCAAATTATGAGTTCATTGTATTATGCGAATGCTT TATTTTCTAAATATCAAGCCGCAAGTTCGGTTTTCCCATCCGGAGTCTTTCCCGAGCAAACTTCTTGCGCTTTCGCCTC CAACACCCAACGAGCGGGCTATGGGGCCGGCTCCACGCCTCCCTTCGCCTCCTCCATGCCCGGGCTGTACTCCAGCGGC AGCGCCGTGCACCCCCAACCCCCCGGCATGTACTCCTCGGGGTACGGCCTGGAGCCCGGCTCCTTCAACATGCACTGTT CCCCCTTTGAGCAAAACCTCTCCATGATGTGCCCGGGAGATGCCTCCAAGCAGAACTGCAACAAAACGGACCAGAGGGA TTCAGATTTGCAAAGCGACAGTAACTTCCGCATCTACCCCTGGATGAGGAGCACAGGCACGGATAGGAAACGCGGCCGG CAAACCTACACCAGGTATCAGACCCTGGAGCTGGAGAAGGAGTTCCACTACAACCGCTACCTGACGAGGAGGAGACGCA TTGAGATCGCCCATGCTCTGTGTCTCACGGAGAGACAGATCAAAATCTGGTTCCAGAACAGGCGCATGAAGTGGAAAAA AGAAAATAAAACTGCCTGCTCCGGCTCCAGCAGCCAGGAAAAGGCAGACGTGGAGGACGACGAGGAGGAATGAAAAGGA CAAAAGGTGGATCCAGGAAACGTGAAAGCTCACGGGAATAGGAAAAAGAAAGGGGAAAAAACCACCCAGAAAAGACTAT ATACTAAAATAGATCAACGTTAAGTGCATAAATAATTAAAAACTTAGGAATGATACGTTGTGTTTCCTGACACTGAAAA AAAAATACTACCTATATTGAAGTTTTTTTTTTTTTTTTGTACAATAGAATGAATATCTACCTATTAAATGTGGCTTTAG AGTCAGAATAGACACCTTTTTTTTCTATGTGAGTCTCCCTATAGTCCAAGTAATTTGTAAATCTCCGTTTGTACTTCGC TGTGTACTTTTTTGGTATGAAGTAACGTGGTCGTGTTTAGCACCTTTAATTTAGAAGATGTGACCTGAAAATCTGAATG CAAATTATACTTAGCGTATATAGAGTCCTGTACATAATAGCAATTATTATTACGCCTTCTCCCTGTAACCTCTGTGGTT CTTTCCACGTTGCAAGGCTGTTTTGTCTGTGTATATTTTTACCCGGGTTTCCTCCTTGTTGAATCCCTAGGAAAAAAAA AACAAAAACAAAAGAAGAGGAATTAATATTGTGCTACGTAAACTGTTGTATATCGAAGTAGCAAAGTATTTAATGGCGA CGTGTTGCTTTTAATTTTCCCCTCGTCTGTGTTGATTATTCTTCGAAATAAAAAGGAAATCTCCCATCTTCTCGAA
Citation	Chloe Moreau, Paolo Caldarelli, Didier Rocancourt, Julian Roussel, Nicolas Denans, Olivier Pourquie, Jerome Gros. Timed Collinear Activation of Hox Genes during Gastrulation Controls the Avian Forelimb Position. Curr Biol. 2019 Jan 7; 29(1):35-50.e4. Epub 2018 Dec 13. DOI: 10.1016/j.cub.2018.11.009.
Copyright	Copyright © 2018 The Author(s). Published by Elsevier Ltd.. All rights reserved.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence above was obtained from NCBI (accession number XM_015299442.2).

no images

Entry 3

GEISHA Id	Hoxb7.Iimura.2006	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show CTGCTCTTGTTGTTGTTTCTAACTGTTCATGCGTGGTGACAGGTTGGGAGATGTGTGGAAAGCCATCCCGAAGGGAACG CGGATGGGGCGTGGGGATGCACACACATCCCCTTGCAACTTAACCTTGGGAAAGGAGAACCGGTGCAAATCCTAACGGC ACATCCACCATTGTCTGAGCTGCTGTTCCTGCCAGTAAGACTTTATTCCTTTCTTACCCCCCACCCCTCTCCCCCCAAC CAAAAGAAAAGGAAAATTGAAGCTGATCTGGAAGGTCTCTTTGCTTCTCCAGCAGAAAGCAAATCAGCCAGCTGGTAAC GCTTTCCTATAACTGTAATTGAGTCCCGCAGAACCGCTGACGCGCTAAACAAGGGATCTGTACAGCCTTTATTTTTCGC AACAAGAAAAGCAAATGCCAGCTCAATACGAAACTCAAAGCCCGTGGCATTGGAATAAATGAGATATAGAGCTGAATGG CATTCGGGGGGGGCGAGAAAAAAAGAAGGAGCCTGGAACTATTAGAGAGAGACCGAGAGGAGCAGCGCCGCGCACCACC TCCCCCCCCCCCCCCCCTTCCCCTTCGCCTTTCTCTTTCTCCCTCGGTCTCAGCTGAAAACTGATTACAGGTTGCTTAT CGACTCCAGCACAATTTCACCCCCTTCCAGCATAGATCTTGGAGGGTTTTATATCGCATCAATTATTTATCATATTTTA TAAATCCAGCAGCACTACAATTTTTTGCCCCCGAGGAGGGAGCGGGCGGCGATTGGCGCCGCTGGAGCCACGTGCCCGC GCGTCACATGGGCCGGGAGGAAAAAGGGCTCCTTTTTGGTGTAAATCTGGACTCTAATTCCGTAATATATCACGGTACC TCGTAAAACCGACACTAAAACGTCCCGACCTACAAATCACCCGGCCAAATTATGAGTTCATTGTATTATGCGAATGCTT TATTTTCTAAATATCAAGCCGCAAGTTCGGTTTTCCCATCCGGAGTCTTTCCCGAGCAAACTTCTTGCGCTTTCGCCTC CAACACCCAACGAGCGGGCTATGGGGCCGGCTCCACGCCTCCCTTCGCCTCCTCCATGCCCGGGCTGTACTCCAGCGGC AGCGCCGTGCACCCCCAACCCCCCGGCATGTACTCCTCGGGGTACGGCCTGGAGCCCGGCTCCTTCAACATGCACTGTT CCCCCTTTGAGCAAAACCTCTCCATGATGTGCCCGGGAGATGCCTCCAAGCAGAACTGCAACAAAACGGACCAGAGGGA TTCAGATTTGCAAAGCGACAGTAACTTCCGCATCTACCCCTGGATGAGGAGCACAGGCACGGATAGGAAACGCGGCCGG CAAACCTACACCAGGTATCAGACCCTGGAGCTGGAGAAGGAGTTCCACTACAACCGCTACCTGACGAGGAGGAGACGCA TTGAGATCGCCCATGCTCTGTGTCTCACGGAGAGACAGATCAAAATCTGGTTCCAGAACAGGCGCATGAAGTGGAAAAA AGAAAATAAAACTGCCTGCTCCGGCTCCAGCAGCCAGGAAAAGGCAGACGTGGAGGACGACGAGGAGGAATGAAAAGGA CAAAAGGTGGATCCAGGAAACGTGAAAGCTCACGGGAATAGGAAAAAGAAAGGGGAAAAAACCACCCAGAAAAGACTAT ATACTAAAATAGATCAACGTTAAGTGCATAAATAATTAAAAACTTAGGAATGATACGTTGTGTTTCCTGACACTGAAAA AAAAATACTACCTATATTGAAGTTTTTTTTTTTTTTTTGTACAATAGAATGAATATCTACCTATTAAATGTGGCTTTAG AGTCAGAATAGACACCTTTTTTTTCTATGTGAGTCTCCCTATAGTCCAAGTAATTTGTAAATCTCCGTTTGTACTTCGC TGTGTACTTTTTTGGTATGAAGTAACGTGGTCGTGTTTAGCACCTTTAATTTAGAAGATGTGACCTGAAAATCTGAATG CAAATTATACTTAGCGTATATAGAGTCCTGTACATAATAGCAATTATTATTACGCCTTCTCCCTGTAACCTCTGTGGTT CTTTCCACGTTGCAAGGCTGTTTTGTCTGTGTATATTTTTACCCGGGTTTCCTCCTTGTTGAATCCCTAGGAAAAAAAA AACAAAAACAAAAGAAGAGGAATTAATATTGTGCTACGTAAACTGTTGTATATCGAAGTAGCAAAGTATTTAATGGCGA CGTGTTGCTTTTAATTTTCCCCTCGTCTGTGTTGATTATTCTTCGAAATAAAAAGGAAATCTCCCATCTTCTCGAA
Citation	Tadahiro Iimura, Olivier Pourquié. Collinear activation of Hoxb genes during gastrulation is linked to mesoderm cell ingression. Nature. 2006 Aug 3;442(7102):568-71. Epub 2006 Jun 7. DOI: 10.1038/nature04838.
Copyright	Copyright © 2006 Nature Publishing Group.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence above was obtained from NCBI (accession number XM_015299442.2).

no images

Entry 4

GEISHA Id	Hoxb7.Bel-Vialar.2002	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show CTGCTCTTGTTGTTGTTTCTAACTGTTCATGCGTGGTGACAGGTTGGGAGATGTGTGGAAAGCCATCCCGAAGGGAACG CGGATGGGGCGTGGGGATGCACACACATCCCCTTGCAACTTAACCTTGGGAAAGGAGAACCGGTGCAAATCCTAACGGC ACATCCACCATTGTCTGAGCTGCTGTTCCTGCCAGTAAGACTTTATTCCTTTCTTACCCCCCACCCCTCTCCCCCCAAC CAAAAGAAAAGGAAAATTGAAGCTGATCTGGAAGGTCTCTTTGCTTCTCCAGCAGAAAGCAAATCAGCCAGCTGGTAAC GCTTTCCTATAACTGTAATTGAGTCCCGCAGAACCGCTGACGCGCTAAACAAGGGATCTGTACAGCCTTTATTTTTCGC AACAAGAAAAGCAAATGCCAGCTCAATACGAAACTCAAAGCCCGTGGCATTGGAATAAATGAGATATAGAGCTGAATGG CATTCGGGGGGGGCGAGAAAAAAAGAAGGAGCCTGGAACTATTAGAGAGAGACCGAGAGGAGCAGCGCCGCGCACCACC TCCCCCCCCCCCCCCCCTTCCCCTTCGCCTTTCTCTTTCTCCCTCGGTCTCAGCTGAAAACTGATTACAGGTTGCTTAT CGACTCCAGCACAATTTCACCCCCTTCCAGCATAGATCTTGGAGGGTTTTATATCGCATCAATTATTTATCATATTTTA TAAATCCAGCAGCACTACAATTTTTTGCCCCCGAGGAGGGAGCGGGCGGCGATTGGCGCCGCTGGAGCCACGTGCCCGC GCGTCACATGGGCCGGGAGGAAAAAGGGCTCCTTTTTGGTGTAAATCTGGACTCTAATTCCGTAATATATCACGGTACC TCGTAAAACCGACACTAAAACGTCCCGACCTACAAATCACCCGGCCAAATTATGAGTTCATTGTATTATGCGAATGCTT TATTTTCTAAATATCAAGCCGCAAGTTCGGTTTTCCCATCCGGAGTCTTTCCCGAGCAAACTTCTTGCGCTTTCGCCTC CAACACCCAACGAGCGGGCTATGGGGCCGGCTCCACGCCTCCCTTCGCCTCCTCCATGCCCGGGCTGTACTCCAGCGGC AGCGCCGTGCACCCCCAACCCCCCGGCATGTACTCCTCGGGGTACGGCCTGGAGCCCGGCTCCTTCAACATGCACTGTT CCCCCTTTGAGCAAAACCTCTCCATGATGTGCCCGGGAGATGCCTCCAAGCAGAACTGCAACAAAACGGACCAGAGGGA TTCAGATTTGCAAAGCGACAGTAACTTCCGCATCTACCCCTGGATGAGGAGCACAGGCACGGATAGGAAACGCGGCCGG CAAACCTACACCAGGTATCAGACCCTGGAGCTGGAGAAGGAGTTCCACTACAACCGCTACCTGACGAGGAGGAGACGCA TTGAGATCGCCCATGCTCTGTGTCTCACGGAGAGACAGATCAAAATCTGGTTCCAGAACAGGCGCATGAAGTGGAAAAA AGAAAATAAAACTGCCTGCTCCGGCTCCAGCAGCCAGGAAAAGGCAGACGTGGAGGACGACGAGGAGGAATGAAAAGGA CAAAAGGTGGATCCAGGAAACGTGAAAGCTCACGGGAATAGGAAAAAGAAAGGGGAAAAAACCACCCAGAAAAGACTAT ATACTAAAATAGATCAACGTTAAGTGCATAAATAATTAAAAACTTAGGAATGATACGTTGTGTTTCCTGACACTGAAAA AAAAATACTACCTATATTGAAGTTTTTTTTTTTTTTTTGTACAATAGAATGAATATCTACCTATTAAATGTGGCTTTAG AGTCAGAATAGACACCTTTTTTTTCTATGTGAGTCTCCCTATAGTCCAAGTAATTTGTAAATCTCCGTTTGTACTTCGC TGTGTACTTTTTTGGTATGAAGTAACGTGGTCGTGTTTAGCACCTTTAATTTAGAAGATGTGACCTGAAAATCTGAATG CAAATTATACTTAGCGTATATAGAGTCCTGTACATAATAGCAATTATTATTACGCCTTCTCCCTGTAACCTCTGTGGTT CTTTCCACGTTGCAAGGCTGTTTTGTCTGTGTATATTTTTACCCGGGTTTCCTCCTTGTTGAATCCCTAGGAAAAAAAA AACAAAAACAAAAGAAGAGGAATTAATATTGTGCTACGTAAACTGTTGTATATCGAAGTAGCAAAGTATTTAATGGCGA CGTGTTGCTTTTAATTTTCCCCTCGTCTGTGTTGATTATTCTTCGAAATAAAAAGGAAATCTCCCATCTTCTCGAA
Citation	Sophie Bel-Vialar, Nobue Itasaki, Robb Krumlauf. Initiating Hox gene expression: in the early chick neural tube differential sensitivity to FGF and RA signaling subdivides the HoxB genes in two distinct groups. Development 2002 Nov;129(22):5103-15.
Copyright	Copyright © The Company of Biologists Limited 2002.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence above was obtained from NCBI (accession number XM_015299442.2).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

7-11

stage 11

Lateral Plate Mesoderm
Neural Plate/Tube
Paraxial Mesoderm
Primitive Streak

Data from NCBI Unigene EST Profile
Unigene ID: Gga.11714

Mouse

Emage
Eurexpress
MGI GXD

Frog

Xenbase

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFIN

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HOXB7homeobox B7