GEISHA - A Chicken Embryo Gene Expression Database
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CAPN2
calpain 2

Gene
Official SymbolCAPN2
Official Full Namecalpain 2
CGNC ID7115
also known ascalpain-2 catalytic subunit|CANP 2|M-calpain|calcium-activated neutral proteinase 2|calpain 2, (m/II) large subunit|calpain M-type|calpain-2 large subunit|calpain-2 subunit|mCL|millimolar-calpain
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Sequence Information
Genomic
RNANM_205080
PolypeptideNP_990411
Gene Expression
In Situ HybridizationGEISHA
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human824ENSG00000162909MIM:114230
Mouse12334ENSMUSG00000026509All phenotypic alleles (2):Targeted, knock-out(2) MGI:88264
Xenopus448035, 399075993757
Zebrafish550505, 445091, 563053, 541374ENSDARG00000034211, ENSDARG00000090014, ENSDARG00000055592, ENSDARG00000091699ZDB-GENE-050417-341, ZDB-GENE-040801-227, ZDB-GENE-050522-84, ZDB-GENE-050320-69ZFIN:ZDB-GENE-050417-341, ZFIN:ZDB-GENE-040801-227, ZFIN:ZDB-GENE-050522-84, ZFIN:ZDB-GENE-050320-69
Gene Ontology
Molecular Functioncalcium ion binding, calcium-dependent cysteine-type endopeptidase activity
Biological Processcellular response to amino acid stimulus, proteolysis
Cellular Componentcytoplasm, dendrite, plasma membrane
Links to other databases
Entrez Gene395963
Ensembl Gene
KEGGgga:395963
GEISHA IdCAPN2Data SourceGEISHA ISH Analysis
Forward cDNA Template PrimerTGACGGCTTTAGCATTGAGACG
Reverse cDNA Template PrimerAATTAACCCTCACTAAAGGCTTTCAGATACACGGACTGTGGTGcDNA Template Length
Complete cDNA Template Probeshow
TGACGGCTTTAGCATTGAGACGTGCAAAATAATGGTTGACCTGCTAGATAACGATGGGAGTGGAAAACTGGGGCTGAAG
GAGTTCCACACGCTCTGGACAAAGATTCAGAAATATCAGAAAATTTACAGGGAAATTGACGTGGATCGATCTGGAACCA
TGAACTCGTATGAGATGAGAAGAGCGCTGGAAGCTGCAGGGTTCAAGTTGAGCTGCCAGTTACATCAGATCATTGTGGC
TCGGTTTGCTGATGAAGACCTCATCATTGACTTTGATAATTGTGTCCGGTGCTTGATTCGGCTGGAAACCTTGTACAAA
ATGTTTAGAAAACTGGACACCGAGAAAACTGGAACAATAGAGTTGAACCTCATTAATTGGCTCTTCTTCACTGTCATTT
GAACTACTGCCATCAGCCCAAGATGCTTCAAAAAGATGAAGATCAGGTGAAGATAATCAAACAGCATACAAAGCAAAAA
ATACATATATGCTAAATTACACGTGCCTTAACTTGCAAATGGGAACTTTGCACAAGCTTACAAGGAGGAAAGAGCTAAT
TCCATGGCAGAAGATCTGCAACCTTGGTTTATAGGTTAATAGTCTTAAATAACCATGTACCTTTGACACTTATACTGAT
AACCTAGCGCACTTTGAAATATTCTTACTAAATCTCCTACGTCATGTGGAGAAGATCATATGCTTGAGTGAGGCTTTGT
AATAGCAGCACCACAGTCCGTGTATCTGAAAG
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 7
stage 8
stage 11
Unlabeled
 
13-18
stage 13
stage 13
stage 16
stage 16
stage 16
stage 16
stage 18
Dermomyotome
Ear/Otic Placode
Head Mesenchyme
Heart
Myotome
Neural Plate/Tube
Notochord
Pharyngeal Arches and Clefts
Pharynx
Sclerotome
 
19-24
stage 19
stage 19
stage 22
stage 22
stage 22
stage 22
stage 24
stage 24
Ear/Otic Placode
Facial Muscles
Head Mesenchyme
Hindbrain
Mesonephros
Midbrain
Myotome
Neural Plate/Tube
Pharyngeal Arches and Clefts
Sclerotome
Spinal Ganglia and Nerves
 
25-27
stage 26
stage 26
stage 26
stage 26
stage 27
stage 27
stage 27
Cranial Ganglia
Foregut
Head Mesenchyme
Hindbrain
Mesonephros
Midbrain
Myotome
Pharyngeal Arches and Clefts
Sclerotome
Spinal Cord
Spinal Ganglia and Nerves
 

Mouse

EmageMGI:88264
MGI GXDMGI:88264

Frog

Xenbase993757

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-050417-341, ZDB-GENE-040801-227, ZDB-GENE-050522-84, ZDB-GENE-050320-69
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