GEISHA - A Chicken Embryo Gene Expression Database
Browse By
- Anatomical Location
- Stage
- Gene Name
- GEISHA ID
- Multiple Parameters
Search
- Quick Search
Data Class
Enter Text:
go
- Gene Family QuickSearch
Transcription Factors
Growth Factors
Receptors
MicroRNAs
- Human Disease Gene Search
Documents
- Downloads
- Protocols
- About GEISHA
- Contact Us
Resources
- Transgenic Birds
- Model Organism Databases
- Gene Expression Databases
- Genomic Resources
- Anatomical Atlases
- Chicken Stage Series
_

HDAC8
histone deacetylase 8

Gene
Official SymbolHDAC8
Official Full Namehistone deacetylase 8
CGNC ID3582
also known ashistone deacetylase 8, Histone deacetylase 8 (HD8), HDAC8
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNAXM_420178
PolypeptideXP_420178
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.11652
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly
Human55869ENSG00000147099MIM:300269
Mouse70315ENSMUSG00000067567All phenotypic alleles (4):Targeted, knock-out(1) Targeted, other(3) MGI:1917565
Xenopus100145561, 4441375863425
Zebrafish406740ENSDARG00000003021ZDB-GENE-040426-2772ZFIN:ZDB-GENE-040426-2772
Gene Ontology
Molecular Function
Biological Process
Cellular Component
Links to other databases
Entrez Gene422182
Ensembl GeneENSGALG00000004825
KEGGgga:422182

Entry 1

GEISHA IdChEST552d17Data SourceGEISHA ISH Analysis
Forward cDNA Template Probeshow
GGATCTTCGACTACGCAGCAGCCGTGGGGGGAGCCACCATCACCGCAGCCCAGTGCCTGCTGGATGGCAAGTGCAAGGT
AGCAATTAACTGGCCTGGAGGGTGGCATCACGCAAAGAAAGATGAAGCTTCTGGTTTTTGTTACCTGAATGATGCTGTC
CTGGGGATCCTGCGACTGCGCCAGAAATTTGACCGCATCCTTTATATTGATTTGGATTTGCATCATGGGGATGGTGTTG
AAGATGCCTTTAGCTTCACCTCGAAGGTCATGACTGTTTCTCTGCACAAGTTTTCGCCAGGATTTTTCCCAGGCACAGG
GGATGTGACAGATATTGGCCTGGGGAAAGGTCGCTATTACAGTGTGAATGTGCCTATCCAAGATGGCATTCAAGATGAG
AAATATTACCAGATCTGTGAAACTGTGCTGAAGGAGGTGTACGCTGCCTTCAACCCTGAGGCAGTGGTGCTACAGCTGG
GGGCTGACACCATTGCTGGAGACCCCATGTGCTCCTTCAACATGACGCCCGAGGGAGTGGGCAAGTGCCTGAAGTACGT
CCTGCAGTGGCAGCTGGCAACTCTCATCCTGGGAGGAGGAGGCTACAACCTTGCCAACACAGCCCGCTGCTGGACGTAC
TTGACTGGGGTCATCCTTGGCAGAACGCTGTCCTCTGAGATCCCTGATCATGAGTTCTTCACATAATATGGTCCTGACT
ACAT
CommentsNo specific expression detected, stages 6-22, widespread or ubiquitous.
no images

Entry 2

GEISHA IdHDAC8.UApcrData SourceGEISHA ISH Analysis
Forward cDNA Template PrimerATCTTTGACTACGCAGCAGCCG
Reverse cDNA Template PrimerATTAACCCTCACTAAAGGTGAGCCTTCCCTTCTCCACTAAACcDNA Template Length831
Forward cDNA Template Probeshow
CCTTCAGATTGCCTTTGATCAAGTTGAAGAATTTCTTGGAATTCTCTGTGGATCGTTGCGGTCCGGGTCTGCAACTGGG
TGTGATCTCCAGCACGTAGTCAGGACCATACTCTGTGAAGAACTCATGATCAGGGATCTCAGAGGACAGCGTTCTGCCA
AGGATGACCCCAGTCAAGTACGTCCAGCAGCGGGCTGTGTTGGCAAGGTTGTAGCCTCCTCCTCCCAGGATGAGAGTTG
CCAGCTGCCACTGCAGGACGTACTTCAGGCACTTGCCCACTCCCTCGGGCGTCATGTTGAAGGAGCACATGGGGTCTCC
AGCAATGGTGTCAGCCCCCAGCTGTAGCACCACTGCCTCAGGGTTGAAGGCAGCGTACACCTCCTTCAGCACNGTTTCA
CAGATCTGGTAATATTTCTCATCTTGAATGCCATCTTGGATAGGCACATTCACACTGTAATAGCGACCTTTCCCCAGGC
CAATATCTGTCACATCCCCTGTGCCTGGGAAAAATCCTGGCGAAAACTTGTGCAGAGAAACAGTCATGACCTTCGAGGT
GAAGCTAAAGGCATCTTCAACACCATCCCCNTGATGCAAATCCAAATCAATATAAAGGATGCGGTCAAATTTCTGGCGC
AGTCGCAGGATCCCCAGGACAGCATCATTCAGGTAACAAAAACCAGAAGCTTCATCTTTCTTTGCGTGATGCCACCCTC
CAGGCCAGTTAATTGCTACCTTGCACTTGCCATCCAGCAGGCACTGGGCTGCNNTGATGGTGGCTCCCCCCACGGCTGC
TGCTA
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
1-3
stage 3
Area Pellucida
 
4-6
stage 4
stage 5
stage 6
Area Pellucida
Early Endoderm
Early Mesoderm
Extraembryonic Mesoderm
Hensen's Node
Lateral Plate Mesoderm
Neural Plate/Tube
Paraxial Mesoderm
Primitive Streak
 
7-12
stage 7
stage 7
stage 7
stage 7
stage 7
stage 8
stage 9
stage 11
stage 11
Anterior Intestinal Portal
Blood Islands
Extraembryonic Mesoderm
Head Mesenchyme
Heart
Intermediate Mesoderm
Lateral Plate Mesoderm
Midbrain
Neural Plate/Tube
Notochord
Primitive Streak
Somites
 
13-18
stage 15
stage 15
stage 16
Dermomyotome
Eye
Forebrain
Foregut
Head Mesenchyme
Heart
Hindbrain
Intermediate Mesoderm
Midbrain
Neural Plate/Tube
Notochord
Oral Pharynx
Pharyngeal Arches and Clefts
Sclerotome
Spinal Cord
situs inversis
19-24
stage 20
stage 20
stage 20
stage 21
stage 21
stage 22
stage 22
stage 24
Ear/Otic Placode
Eye
Forebrain
Foregut
Gut
Heart
Hindbrain
Leg Mesenchyme
Liver
Mesonephros
Midbrain
Myotome
Notochord
Pharyngeal Arches and Clefts
Sclerotome
Somatic Mesoderm
Spinal Cord
Spinal Ganglia and Nerves
Widespread Expression
Wing Mesenchyme
 

Entry 3

GEISHA IdHDAC8.Murko.2010Data SourcePublication
Complete cDNA Template Probeshow
AGATATTGGCCTGGGGAAAGGTCGCTATTACAGTGTGAATGTGCCTATCCAAGATGGCATTCAAGATGAGAAATATTAC
CAGATCTGTGAAACTGTGCTGAAGGAGGTGTACGCTGCCTTCAACCCTGAGGCAGTGGTGCTACAGCTGGGGGCTGACA
CCATTGCTGGAGACCCCATGTGCTCCTTCAACATGACGCCCGAGGGAGTGGGCAAGTGCCTGAAGTACGTCCTGCAGTG
GCAGCTGGCAACTCTCATCCTGGGAGGAGGAGGCTACAACCTTGCCAACACAGCCCGCTGCTGGACGTACTTGACTGG
CitationMurko C, Lagger S, Steiner M, Seiser C, Schoefer C, Pusch O. Expression of class I histone deacetylases during chick and mouse development. Int J Dev Biol. 2010;54(10):1527-37.
CopyrightReprinted from Int. J. Dev. Biol., 55(1), Copyright (2010), with permission from the authors and IJDB
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 9
stage 9
stage 12
Central Nervous System
Eye
Forebrain
Hindbrain
Limb Buds
Midbrain
Spinal Cord
Wing
 
13-18
stage 16
Central Nervous System
Spinal Cord
 
19-23
stage 23
Ear/Otic Placode
Eye
Forebrain
Hindbrain
Limb Buds
Midbrain
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.11652

Mouse

EmageMGI:1917565
EurexpressMGI:1917565
MGI GXDMGI:1917565

Frog

Xenbase5863425

Fruit Fly

BDGP

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-040426-2772
Home | Contact
     
© 2008 Arizona Board of Regents
This website is hosted by the Biotechnology Computing Facility at the University of Arizona