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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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LHX6
LIM homeobox 6

Gene

Official Symbol	LHX6
Official Full Name	LIM homeobox 6
CGNC ID	924
also known as	LIM/homeobox protein Lhx6\|LIM homeodomain protein
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	XM_001235420
Polypeptide	XP_001235421
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.33663

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	26468	ENSG00000106852		MIM:608215
Mouse	16874	ENSMUSG00000026890	All phenotypic alleles (6):Targeted, knock-out(1) Targeted, other(5)	MGI:1306803
Xenopus	100493242, 378636			493340
Zebrafish	445565	ENSDARG00000006896	ZDB-GENE-041025-1	ZFIN:ZDB-GENE-041025-1

Gene Ontology

Molecular Function
Biological Process
Cellular Component

Links to other databases

Entrez Gene	772259
Ensembl Gene
KEGG	gga:772259

Entry 1

GEISHA Id	pgm2n.pk003.o1	Data Source	GEISHA ISH Analysis
Forward cDNA Template Probe	show `ACCTTCTCNCCCCTATTTGATAGCGGTCCTTCCATGTCTGCTTTGAGGTGCACTGGAGGAGCCGTGTAGGGAAGTCTAC AGTGCACTTGTCCACACTGTACCTGACTCTCAATGTATCCATGCAGCGTCACCATGCGGGCCCTCTCCGGGCTGCTGAA GGGCGAATAGTGGATGTCCNCNGCAAGGGAGGANGGGATGCCGGGCGGGGGAGGCCCCGAGGGCNGCNCCNTGTGCTGG GGAGTGTGTTTTTTATGGNGGGCTCGGNCAGTTTTGGAACCAAACCTGAATGACTCTCCGACNCNGCCCCCGTCATGTC TGCNAGTTTTCTGAANCCNTTTTGTGCATCGGGGGNTTGTTGNNCTGANCAAAANTGNGNCCTGCNTGAACCTGCANCC TGCTCANCGGNTAAAGGAGGGGGNGGGCCCCTTTTGGCTGGCTTTGNCTGGGCTGTCCTGC`

Stage

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Location (click to highlight)

Comments (click to highlight)

13-18

stage 15

stage 16

stage 17

stage 18

Pharyngeal Arches and Clefts

19-22

stage 20

stage 21

stage 22

Head Mesenchyme
Mesoderm
Pharyngeal Arches and Clefts

Entry 2

GEISHA Id	Lhx6.Haworth.2007	Data Source	Publication
Complete cDNA Template Probe	show ATGGAGCCGCAGCCGCCCTCTCCCGCTCTCTCCCGCAAGGTGATGCCGCCGGAGCCGCTGCCCAAAGCGACCGCCCGCT GCCTCGACCCGCACGGCCGCGCCATGTCGCAGCCCGACGGGGAGCCGCTGCCCGCAGCCCTGGAGAAGGAGGACGCCCG CTCGGCGCCCAGCACCCCCTCCACGCCGTCCGTCTGCTCCCCGCCGTCCTCCTCCTCCTCCTCCACGCCGTCGGCCGGC AAGAACGTGTGCTCCAGCTGCGGGCTGGAGATCCTCGACCGGTACCTGCTGAAGGTAAATAATTGCATTTGGCATTCAG GGCTCCAGTGCTTTGAGGAGAACCAAATTAAAACTGGAGCTCGTGGAGCTCCGTCAGAGGAACGCTGTGTTCCCAGGCG ATCAGCCTTTTTTTGTTGGTTCAGCCGCTTCGGTACCAAATGTGCCCGCTGCGGCCGGCAGATATACGCCAGTGATTGG GTGCGGCGGGCGCGCGGCAATGCCTACCACCTGGCCTGCTTTGCCTGCTTCTCCTGCAAGAGGCAGCTCTCCACGGGCG AGGAGTTCGGCTTGGTGGAGGAAAAGGTGCTGTGCCGGATCCACTACGACACCATGATAGAGAACCTCAAGCGGGCAGC AGAAAATGGCAATGGGATCACACTGGAGGGGGCCGTGCCCTCAGAGCAGGACAGCCAGCCAAAGCCAGCCAAAAGGGCC CGCACCTCCTTCACCGCTGAGCAGCTGCAGGTCATGCAGGCACAGTTTGCTCAGGACAACAACCCCGATGCACAAACGC TTCAGAAACTCGCAGACATGACGGGGCTGAGTCGGAGAGTCATTCAGGTTTGGTTCCAAAACTGCCGAGCCCGCCATAA AAAACACACTCCCCAGCACACGGTGCCGCCCTCGGGGCCTCCCCCGCCCCGCATCCCCTCCTCCCTCGCCGAGGACATC CACTATTCGCCCTTCAGCAGCCCGGAGAGGGCCCGCATGGTGACGCTGCATGGATACATTGAGAGTCAGGTACAGTGTG GACAAATGCACTGTAGACTTCCCTACACGGCTCCTCCAGTGCACCTCAAAGCAGACATGGAAGGACCGCTATCAAATAG GGGTGAGAAGGTAATTCTGGTGCTTGCTGCTGCTTTGGGGCCGACCTCCTTCCGTAGCAATAGTTTTTGTGTCATCCTC TTTCAGTACTGA
Citation	Haworth KE, Wilson JM, Grevellec A, Cobourne MT, Healy C, Helms JA, Sharpe PT, Tucker AS. Sonic hedgehog in the pharyngeal endoderm controls arch pattern via regulation of Fgf8 in head ectoderm. Dev Biol. 2007 Mar 1;303(1):244-58.
Copyright	Reprinted with permission from Elsevier. Copyright © 2007 Elsevier B.V. All rights reserved.
Comments	As information provided is insufficient to verify exact sequence used to synthesize the probe, the sequence below was obtained from NCBI (Acc# XM_001235420.1)