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A chicken embryo gene expression database

	Anatomical Location
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	Gene Name
	GEISHA ID
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HESX1
HESX homeobox 1

The human orthologue of this gene is associated
with the following human diseases:

Gene

Official Symbol	HESX1
Official Full Name	HESX homeobox 1
CGNC ID	4101
also known as	GANF, homeobox protein ANF-1\|anterior neural fold protein\|homeo box (expressed in ES cells) 1\|homeobox protein GANF\|homeobox, ES cell expressed 1\|homeodomain-containing protein
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC

Sequence Information

Genomic
RNA	NM_205012
Polypeptide	NP_990343

Gene Expression

In Situ Hybridization

GEISHA

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human	8820	ENSG00000163666	MIM:182230	MIM:601802
Mouse	15209	ENSMUSG00000040726	All phenotypic alleles (4):Targeted, knock-out(1) Targeted, other(3)	MGI:96071
Xenopus	549466, 397950, 378542			483192
Zebrafish	30620	ENSDARG00000054509	ZDB-GENE-990415-130	ZFIN:ZDB-GENE-990415-130

Gene Ontology

Molecular Function	sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity
Biological Process	multicellular organismal development
Cellular Component	nucleus

Links to other databases

Entrez Gene	395864
Ensembl Gene	ENSGALG00000005506
KEGG	gga:395864

Entry 1

GEISHA Id	GANF	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show AGTGTATGTGCTGTGCTGTGCTCTGAAGGTGAAACCATGGCAAGTACATCGCTGTGTGCAGCTAATCCATCAGCATCTC AGAATCTTCGGAAAGTGTCTGGTTTTGTAGAAAATAAAACCACACAGTGCTCATTTTCCATTGAAAGTATTTTAGGATT GGAGCAGAAGAAGGATGGCGCAGCTGTGAAACCTCACAGACCGTGGATGGATGGATGCATGCACCAGCTTGGTGATCCA CATCTGCAAATCCCTGTTGTTTCCTATGAAAATTCATTATTTCATGCTAACAGTAATCTAATGCAAGAGGAAAAAGTTT TGAACTGTGAAAAATATTTTTCAGTCACAGTCACTGAAAGGTTATCTTTCAAACGAGAATTGAGCTGGTATAGGGGTAG AAGACCGAGAACTGCTTTCACTAGAAACCAGATTGAAGTCTTGGAAAATGTTTTTAAAATGAACTCCTACCCTGGCATT GATATTAGAGAAGAATTAGCTCGCAAGTTAGATTTAGAGGAAGACAGGATCCAGATCTGGTTCCAGAACCGTCGTGCAA AACTGAAGAGATCCCACCGAGAATCACAGTTTTTAATGGTGAAAAATAATTTCACCTCCAGCCTGCTAGAGTAGGAGGA AGGATGGTTTGCCTTGATATTACTACAATGGGACTTGAAGAATTACTGGCATGTGTATTGTGTATTGTATAAACAATGA TTATGTATTAATTATGATTTTATCCCTAGATTTGAAAGATTATCATTTTTCACTCAAATAAACTGTAAATATGTGAAGT ATTGTAAACTAATTTTTGTGGAGAAAGTGAAGCTTTTCCTATATATTTTTAATAAATATGTTGCAGAAAAGTTTAAATA TTTTTTGCAGTTAAAA
Comments	Images courtesy of Susan Chapman

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

Forebrain
Neural Plate/Tube

7-12

stage 7

stage 10

Forebrain
Neural Plate/Tube

13-17

stage 17

Diencephalon
Forebrain
Peripheral Nervous System
Telencephalon

Entry 2

GEISHA Id	HESX1.Chapman.2002	Data Source	Publication
Complete cDNA Template Probe	show AGTGTATGTGCTGTGCTGTGCTCTGAAGGTGAAACCATGGCAAGTACATCGCTGTGTGCAGCTAATCCATCAGCATCTC AGAATCTTCGGAAAGTGTCTGGTTTTGTAGAAAATAAAACCACACAGTGCTCATTTTCCATTGAAAGTATTTTAGGATT GGAGCAGAAGAAGGATGGCGCAGCTGTGAAACCTCACAGACCGTGGATGGATGGATGCATGCACCAGCTTGGTGATCCA CATCTGCAAATCCCTGTTGTTTCCTATGAAAATTCATTATTTCATGCTAACAGTAATCTAATGCAAGAGGAAAAAGTTT TGAACTGTGAAAAATATTTTTCAGTCACAGTCACTGAAAGGTTATCTTTCAAACGAGAATTGAGCTGGTATAGGGGTAG AAGACCGAGAACTGCTTTCACTAGAAACCAGATTGAAGTCTTGGAAAATGTTTTTAAAATGAACTCCTACCCTGGCATT GATATTAGAGAAGAATTAGCTCGCAAGTTAGATTTAGAGGAAGACAGGATCCAGATCTGGTTCCAGAACCGTCGTGCAA AACTGAAGAGATCCCACCGAGAATCACAGTTTTTAATGGTGAAAAATAATTTCACCTCCAGCCTGCTAGAGTAGGAGGA AGGATGGTTTGCCTTGATATTACTACAATGGGACTTGAAGAATTACTGGCATGTGTATTGTGTATTGTATAAACAATGA TTATGTATTAATTATGATTTTATCCCTAGATTTGAAAGATTATCATTTTTCACTCAAATAAACTGTAAATATGTGAAGT ATTGTAAACTAATTTTTGTGGAGAAAGTGAAGCTTTTCCTATATATTTTTAATAAATATGTTGCAGAAAAGTTTAAATA TTTTTTGCAGTTAAAA
Citation	Chapman SC, Schubert FR, Schoenwolf GC, Lumsden A. Analysis of spatial and temporal gene expression patterns in blastula and gastrula stage chick embryos. Dev Biol. 2002 May 1;245(1):187-99.
Copyright	2002 Elsevier Science (USA). All rights reserved.
Comments	HESX1 Called GANF in publication

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

4-5

stage 4

stage 5

Neural Plate/Tube

Chordin expresssion in red

Entry 3

GEISHA Id	Hesx1.Abe.2006	Data Source	Publication
Complete cDNA Template Probe	show AGTGTATGTGCTGTGCTGTGCTCTGAAGGTGAAACCATGGCAAGTACATCGCTGTGTGCAGCTAATCCATCAGCATCTC AGAATCTTCGGAAAGTGTCTGGTTTTGTAGAAAATAAAACCACACAGTGCTCATTTTCCATTGAAAGTATTTTAGGATT GGAGCAGAAGAAGGATGGCGCAGCTGTGAAACCTCACAGACCGTGGATGGATGGATGCATGCACCAGCTTGGTGATCCA CATCTGCAAATCCCTGTTGTTTCCTATGAAAATTCATTATTTCATGCTAACAGTAATCTAATGCAAGAGGAAAAAGTTT TGAACTGTGAAAAATATTTTTCAGTCACAGTCACTGAAAGGTTATCTTTCAAACGAGAATTGAGCTGGTATAGGGGTAG AAGACCGAGAACTGCTTTCACTAGAAACCAGATTGAAGTCTTGGAAAATGTTTTTAAAATGAACTCCTACCCTGGCATT GATATTAGAGAAGAATTAGCTCGCAAGTTAGATTTAGAGGAAGACAGGATCCAGATCTGGTTCCAGAACCGTCGTGCAA AACTGAAGAGATCCCACCGAGAATCACAGTTTTTAATGGTGAAAAATAATTTCACCTCCAGCCTGCTAGAGTAGGAGGA AGGATGGTTTGCCTTGATATTACTACAATGGGACTTGAAGAATTACTGGCATGTGTATTGTGTATTGTATAAACAATGA TTATGTATTAATTATGATTTTATCCCTAGATTTGAAAGATTATCATTTTTCACTCAAATAAACTGTAAATATGTGAAGT ATTGTAAACTAATTTTTGTGGAGAAAGTGAAGCTTTTCCTATATATTTTTAATAAATATGTTGCAGAAAAGTTTAAATA TTTTTTGCAGTTAAAA
Citation	Abe Y, Chen W, Huang W, Nishino M, Li YP. CNBP regulates forebrain formation at organogenesis stage in chick embryos. Dev Biol. 2006 Jul 1;295(1):116-27. Epub 2006 Apr 19.
Copyright	Reprinted from Developmental Biology, 295, Yoko Abea, Wei Chena, Wei Huangc, Mizuho Nishinod and Yi-Ping Li, CNBP regulates forebrain formation at organogenesis stage in chick embryos, 116-127, Copyright 2006, with permission from Elsevier. Copyright © 2006 Elsevier B.V. All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. The sequence below was obtained from NCBI (acc #NM_205012)

Stage

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Location (click to highlight)

Comments (click to highlight)

19-21

stage 21

Allantois
Ear/Otic Placcode
Forebrain
Midbrain
Tail

Entry 4

GEISHA Id	Anf.Chapman.2008	Data Source	Direct Submission
Complete cDNA Template Probe	show AGTGTATGTGCTGTGCTGTGCTCTGAAGGTGAAACCATGGCAAGTACATCGCTGTGTGCAGCTAATCCATCAGCATCTC AGAATCTTCGGAAAGTGTCTGGTTTTGTAGAAAATAAAACCACACAGTGCTCATTTTCCATTGAAAGTATTTTAGGATT GGAGCAGAAGAAGGATGGCGCAGCTGTGAAACCTCACAGACCGTGGATGGATGGATGCATGCACCAGCTTGGTGATCCA CATCTGCAAATCCCTGTTGTTTCCTATGAAAATTCATTATTTCATGCTAACAGTAATCTAATGCAAGAGGAAAAAGTTT TGAACTGTGAAAAATATTTTTCAGTCACAGTCACTGAAAGGTTATCTTTCAAACGAGAATTGAGCTGGTATAGGGGTAG AAGACCGAGAACTGCTTTCACTAGAAACCAGATTGAAGTCTTGGAAAATGTTTTTAAAATGAACTCCTACCCTGGCATT GATATTAGAGAAGAATTAGCTCGCAAGTTAGATTTAGAGGAAGACAGGATCCAGATCTGGTTCCAGAACCGTCGTGCAA AACTGAAGAGATCCCACCGAGAATCACAGTTTTTAATGGTGAAAAATAATTTCACCTCCAGCCTGCTAGAGTAGGAGGA AGGATGGTTTGCCTTGATATTACTACAATGGGACTTGAAGAATTACTGGCATGTGTATTGTGTATTGTATAAACAATGA TTATGTATTAATTATGATTTTATCCCTAGATTTGAAAGATTATCATTTTTCACTCAAATAAACTGTAAATATGTGAAGT ATTGTAAACTAATTTTTGTGGAGAAAGTGAAGCTTTTCCTATATATTTTTAATAAATATGTTGCAGAAAAGTTTAAATA TTTTTTGCAGTTAAAA
Comments	Double labeled with Chordin or Dkk1. Images Provided by Susan Chapman

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

stage 5

stage 6

Headfold

Anf: blue
Chd: red
Dkk1: red

Entry 5

GEISHA Id	Ganf.Chapman.2008	Data Source	Direct Submission
Forward cDNA Template Probe	show AGTGTATGTGCTGTGCTGTGCTCTGAAGGTGAAACCATGGCAAGTACATCGCTGTGTGCAGCTAATCCATCAGCATCTC AGAATCTTCGGAAAGTGTCTGGTTTTGTAGAAAATAAAACCACACAGTGCTCATTTTCCATTGAAAGTATTTTAGGATT GGAGCAGAAGAAGGATGGCGCAGCTGTGAAACCTCACAGACCGTGGATGGATGGATGCATGCACCAGCTTGGTGATCCA CATCTGCAAATCCCTGTTGTTTCCTATGAAAATTCATTATTTCATGCTAACAGTAATCTAATGCAAGAGGAAAAAGTTT TGAACTGTGAAAAATATTTTTCAGTCACAGTCACTGAAAGGTTATCTTTCAAACGAGAATTGAGCTGGTATAGGGGTAG AAGACCGAGAACTGCTTTCACTAGAAACCAGATTGAAGTCTTGGAAAATGTTTTTAAAATGAACTCCTACCCTGGCATT GATATTAGAGAAGAATTAGCTCGCAAGTTAGATTTAGAGGAAGACAGGATCCAGATCTGGTTCCAGAACCGTCGTGCAA AACTGAAGAGATCCCACCGAGAATCACAGTTTTTAATGGTGAAAAATAATTTCACCTCCAGCCTGCTAGAGTAGGAGGA AGGATGGTTTGCCTTGATATTACTACAATGGGACTTGAAGAATTACTGGCATGTGTATTGTGTATTGTATAAACAATGA TTATGTATTAATTATGATTTTATCCCTAGATTTGAAAGATTATCATTTTTCACTCAAATAAACTGTAAATATGTGAAGT ATTGTAAACTAATTTTTGTGGAGAAAGTGAAGCTTTTCCTATATATTTTTAATAAATATGTTGCAGAAAAGTTTAAATA TTTTTTGCAGTTAAAA
Comments	Images Provided by Susan Chapman

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

4-6

stage 5

Headfold
Neural Plate/Tube

7-12

stage 7

stage 8

stage 9

stage 10

Forebrain
Neural Plate/Tube

13-17

stage 17

Forebrain
Peripheral Nervous System

hypothalamus

Entry 6

GEISHA Id	GANF.Spieler.2004	Data Source	Publication
Complete cDNA Template Probe	show AGTGTATGTGCTGTGCTGTGCTCTGAAGGTGAAACCATGGCAAGTACATCGCTGTGTGCAGCTAATCCATCAGCATCTC AGAATCTTCGGAAAGTGTCTGGTTTTGTAGAAAATAAAACCACACAGTGCTCATTTTCCATTGAAAGTATTTTAGGATT GGAGCAGAAGAAGGATGGCGCAGCTGTGAAACCTCACAGACCGTGGATGGATGGATGCATGCACCAGCTTGGTGATCCA CATCTGCAAATCCCTGTTGTTTCCTATGAAAATTCATTATTTCATGCTAACAGTAATCTAATGCAAGAGGAAAAAGTTT TGAACTGTGAAAAATATTTTTCAGTCACAGTCACTGAAAGGTTATCTTTCAAACGAGAATTGAGCTGGTATAGGGGTAG AAGACCGAGAACTGCTTTCACTAGAAACCAGATTGAAGTCTTGGAAAATGTTTTTAAAATGAACTCCTACCCTGGCATT GATATTAGAGAAGAATTAGCTCGCAAGTTAGATTTAGAGGAAGACAGGATCCAGATCTGGTTCCAGAACCGTCGTGCAA AACTGAAGAGATCCCACCGAGAATCACAGTTTTTAATGGTGAAAAATAATTTCACCTCCAGCCTGCTAGAGTAGGAGGA AGGATGGTTTGCCTTGATATTACTACAATGGGACTTGAAGAATTACTGGCATGTGTATTGTGTATTGTATAAACAATGA TTATGTATTAATTATGATTTTATCCCTAGATTTGAAAGATTATCATTTTTCACTCAAATAAACTGTAAATATGTGAAGT ATTGTAAACTAATTTTTGTGGAGAAAGTGAAGCTTTTCCTATATATTTTTAATAAATATGTTGCAGAAAAGTTTAAATA TTTTTTGCAGTTAAAA
Citation	Spieler D, Bäumer N, Stebler J, Köprunner M, Reichman-Fried M, Teichmann U, Raz E, Kessel M, Wittler L. Involvement of Pax6 and Otx2 in the forebrain-specific regulation of the vertebrate homeobox gene ANF/Hesx1. Dev Biol. 2004 May 15;269(2):567-79.
Copyright	Copyright © 2004 Elsevier Inc. All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205012).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

stage 5

Headfold
Unlabeled

7-9

stage 8

stage 9

Neural Plate/Tube
Telencephalon

Anterior Neural Folds
Dorsal Neural Folds

Entry 7

GEISHA Id	GANF.Chapman.2003	Data Source	Publication
Complete cDNA Template Probe	show AGTGTATGTGCTGTGCTGTGCTCTGAAGGTGAAACCATGGCAAGTACATCGCTGTGTGCAGCTAATCCATCAGCATCTC AGAATCTTCGGAAAGTGTCTGGTTTTGTAGAAAATAAAACCACACAGTGCTCATTTTCCATTGAAAGTATTTTAGGATT GGAGCAGAAGAAGGATGGCGCAGCTGTGAAACCTCACAGACCGTGGATGGATGGATGCATGCACCAGCTTGGTGATCCA CATCTGCAAATCCCTGTTGTTTCCTATGAAAATTCATTATTTCATGCTAACAGTAATCTAATGCAAGAGGAAAAAGTTT TGAACTGTGAAAAATATTTTTCAGTCACAGTCACTGAAAGGTTATCTTTCAAACGAGAATTGAGCTGGTATAGGGGTAG AAGACCGAGAACTGCTTTCACTAGAAACCAGATTGAAGTCTTGGAAAATGTTTTTAAAATGAACTCCTACCCTGGCATT GATATTAGAGAAGAATTAGCTCGCAAGTTAGATTTAGAGGAAGACAGGATCCAGATCTGGTTCCAGAACCGTCGTGCAA AACTGAAGAGATCCCACCGAGAATCACAGTTTTTAATGGTGAAAAATAATTTCACCTCCAGCCTGCTAGAGTAGGAGGA AGGATGGTTTGCCTTGATATTACTACAATGGGACTTGAAGAATTACTGGCATGTGTATTGTGTATTGTATAAACAATGA TTATGTATTAATTATGATTTTATCCCTAGATTTGAAAGATTATCATTTTTCACTCAAATAAACTGTAAATATGTGAAGT ATTGTAAACTAATTTTTGTGGAGAAAGTGAAGCTTTTCCTATATATTTTTAATAAATATGTTGCAGAAAAGTTTAAATA TTTTTTGCAGTTAAAA
Citation	Chapman SC, Schubert FR, Schoenwolf GC, Lumsden A. Anterior identity is established in chick epiblast by hypoblast and anterior definitive endoderm. Development. 2003 Nov;130(21):5091-101. Epub 2003 Aug 27.
Copyright	© 2003 The Company of Biologists Ltd
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (acc # U65436.1).

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

stage 5

stage 6

Early Mesoderm
Neural Plate/Tube

(B) Sagittal section (40-50 mm) with anterior towards the left.
(D) Sagittal section (40-50 mm) with anterior towards the left.
(F) Sagittal section (40-50 mm) with anterior towards the left.
Double in situ hybridization
Double in situ hybridization - St. 4+/5
Double in situ hybridization - St. 4/4+
Double in situ hybridization - St. 5+
brown color is GANF expression

Entry 8

GEISHA Id	GANF.Sanchez-Arrones.2009	Data Source	Publication
Complete cDNA Template Probe	show AGTGTATGTGCTGTGCTGTGCTCTGAAGGTGAAACCATGGCAAGTACATCGCTGTGTGCAGCTAATCCATCAGCATCTC AGAATCTTCGGAAAGTGTCTGGTTTTGTAGAAAATAAAACCACACAGTGCTCATTTTCCATTGAAAGTATTTTAGGATT GGAGCAGAAGAAGGATGGCGCAGCTGTGAAACCTCACAGACCGTGGATGGATGGATGCATGCACCAGCTTGGTGATCCA CATCTGCAAATCCCTGTTGTTTCCTATGAAAATTCATTATTTCATGCTAACAGTAATCTAATGCAAGAGGAAAAAGTTT TGAACTGTGAAAAATATTTTTCAGTCACAGTCACTGAAAGGTTATCTTTCAAACGAGAATTGAGCTGGTATAGGGGTAG AAGACCGAGAACTGCTTTCACTAGAAACCAGATTGAAGTCTTGGAAAATGTTTTTAAAATGAACTCCTACCCTGGCATT GATATTAGAGAAGAATTAGCTCGCAAGTTAGATTTAGAGGAAGACAGGATCCAGATCTGGTTCCAGAACCGTCGTGCAA AACTGAAGAGATCCCACCGAGAATCACAGTTTTTAATGGTGAAAAATAATTTCACCTCCAGCCTGCTAGAGTAGGAGGA AGGATGGTTTGCCTTGATATTACTACAATGGGACTTGAAGAATTACTGGCATGTGTATTGTGTATTGTATAAACAATGA TTATGTATTAATTATGATTTTATCCCTAGATTTGAAAGATTATCATTTTTCACTCAAATAAACTGTAAATATGTGAAGT ATTGTAAACTAATTTTTGTGGAGAAAGTGAAGCTTTTCCTATATATTTTTAATAAATATGTTGCAGAAAAGTTTAAATA TTTTTTGCAGTTAAAA
Citation	Sánchez-Arrones L, Ferrán JL, Rodríguez-Gallardo L, Puelles L. Incipient forebrain boundaries traced by differential gene expression and fate mapping in the chick neural plate. Dev Biol. 2009 Nov 1;335(1):43-65. Epub 2009 Aug 19.
Copyright	Copyright © 2009 Elsevier Inc. All rights reserved.
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI NM_205012.1

Stage

Image (click image to view full size)

Location (click to highlight)

Comments (click to highlight)

4-6

stage 5

stage 6

Headfold
Neural Plate/Tube

HH Stage 5+

7-8

stage 8

Neural Plate/Tube
Surface Ectoderm

HH Stage 6/7

Entry 9

GEISHA Id	GANF.Borodulin.2012	Data Source	Publication
Complete cDNA Template Probe	show AGTGTATGTGCTGTGCTGTGCTCTGAAGGTGAAACCATGGCAAGTACATCGCTGTGTGCAGCTAATCCATCAGCATCTC AGAATCTTCGGAAAGTGTCTGGTTTTGTAGAAAATAAAACCACACAGTGCTCATTTTCCATTGAAAGTATTTTAGGATT GGAGCAGAAGAAGGATGGCGCAGCTGTGAAACCTCACAGACCGTGGATGGATGGATGCATGCACCAGCTTGGTGATCCA CATCTGCAAATCCCTGTTGTTTCCTATGAAAATTCATTATTTCATGCTAACAGTAATCTAATGCAAGAGGAAAAAGTTT TGAACTGTGAAAAATATTTTTCAGTCACAGTCACTGAAAGGTTATCTTTCAAACGAGAATTGAGCTGGTATAGGGGTAG AAGACCGAGAACTGCTTTCACTAGAAACCAGATTGAAGTCTTGGAAAATGTTTTTAAAATGAACTCCTACCCTGGCATT GATATTAGAGAAGAATTAGCTCGCAAGTTAGATTTAGAGGAAGACAGGATCCAGATCTGGTTCCAGAACCGTCGTGCAA AACTGAAGAGATCCCACCGAGAATCACAGTTTTTAATGGTGAAAAATAATTTCACCTCCAGCCTGCTAGAGTAGGAGGA AGGATGGTTTGCCTTGATATTACTACAATGGGACTTGAAGAATTACTGGCATGTGTATTGTGTATTGTATAAACAATGA TTATGTATTAATTATGATTTTATCCCTAGATTTGAAAGATTATCATTTTTCACTCAAATAAACTGTAAATATGTGAAGT ATTGTAAACTAATTTTTGTGGAGAAAGTGAAGCTTTTCCTATATATTTTTAATAAATATGTTGCAGAAAAGTTTAAATA TTTTTTGCAGTTAAAA
Citation	Borodulin AV, Eroshkin FM, Bayramov AV, Zaraisky AG. Noggin4 expression during chick embryonic development. Int J Dev Biol. 2012;56(5):403-6.
Copyright	© 2012 UBC Press
Comments	As insufficient information is provided in publication to verify exact sequence used to synthesize probe, the sequence below was obtained from NCBI (acc #NM_205012.1).

Stage

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Location (click to highlight)

Comments (click to highlight)

stage 4

Ectoderm

PN, presumptive neuroectoderm

Entry 10

GEISHA Id	HESX1.Trevers.2023	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show CTGACGGGAGGTGGTTTGTGGTTCGGGTTGCTTTCGCGCGCGATGAGCGGCGGGAGCTGCGCCTCGCGCCTCGCGCCTC GGAGCTGGCGCTTACCTGCGCGGCGGAGCGCTGCGGGACTGCCGCCACCGCGTCCTGTCAGGGTGGGGACGTCCCTCCC GCTCTTGGTGCGGGAGCTCGTTAGGCTGAGCCAGGGAGAAGAGCAGCCAACGGCTCTTTTAAGGATTTCAGATGTGTCC CCTAATGGAGAGAACTTTGGCTCTGCTGAGGAGTGGAATTAGCTGACTGGATCAGGTAGTTCATGGGAGTGTGGATCAT GCATATGAAGACAGCCTTACTGAGAGATGAGTCCCGTGGGCCTTGTTACTCTTTCTCAATGCTGACATGATCAGAAGGC ATGGCAGTAGCCAGTGAGCTGCTTATACAGCTATAAGGAGGACTTCTGGAGAAATGCAAGTACAGTGAGTGTATGTGCT GTGCTGTGCTGGCTGAAGGTGAAACCATGGCAAGTACATCGCTGTGTGCAGCTAATCCATCAGCATCTCAGAATCTTCG GAAAGTGTCTGGTTTTGTAGAAAATAAAACCACACAGTGCTCATTTTCCATTGAAAGTATTTTAGGATTGGAGCAGAAG AAGGATGGCATTGCAGCTGTGAAACCTCACAGACCGTGGATGGATGTGTGCACCAACTTGGTTTTAGGTGATGACAGTG ATCCACATCTGCAAATCCCTGTTGTTTCCTATGAAAATTCATTATTTCATGCTAACAGTAATCTAATGCAAGAGGAAAA AGTTTTGAACTGTGAAAAATATTTTTCAGTCACTGAAAGGTTATCTTTCAAACGAGAATTGAGCTGGTATAGGGGTAGA AGACCGAGAACTGCTTTCACTAGAAACCAGATTGAAGTCTTGGAAAATGTTTTTAAAATGAACTCCTACCCTGGCATTG ATATTAGAGAAGAATTAGCTCGCAAGTTAGATTTAGAGGAAGACAGGATCCAGATCTGGTTCCAGAACCGTCGTGCAAA ACTGAAGAGATCCCACCGAGAATCACAGTTTTTAATGGTGAAAAATAATTTCACCTCCAGCCTGCTAGAGTAGGAGGAA GGATGGTTTGCCTTGATGTTACTACAATGGGACTTGAAGAATTACTGGCATTGTTGTAATTTGTATTAAACAATGATTA TGTATTAATTATGATTTTATCCCTAGATTTGAAAGATTATCATTTTTCACTCAAATAAACTGTAAATATGTGAAGTATT GTAAACTAATTTTTGTGGAGAAAGTGAACTTTTCCTATATATTTTAATAAATATGTTCAGAAAAGTTTAAATATTTTTT GCAGTTAAAAAATAAACCGTAAGTTCTGGGTTGTGT
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205012).