GEISHA - A Chicken Embryo Gene Expression Database
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HPGDS
hematopoietic prostaglandin D synthase

Gene
Official SymbolHPGDS
Official Full Namehematopoietic prostaglandin D synthase
CGNC ID49518
also known asH-PGDS, PGDS, hematopoietic prostaglandin D synthase|GST class-sigma|glutathione S-transferase|glutathione-dependent PGD synthase|glutathione-dependent PGD synthetase|glutathione-requiring prostaglandin D synthase|prostaglandin-D synthase|prostaglandin-H2 D-isomerase
gene typeprotein-coding
Genomic Map
 Ensembl
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_205011
PolypeptideNP_990342
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.3137
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly36927FBgn0010226
Human27306ENSG00000163106MIM:602598
Mouse54486ENSMUSG00000029919All phenotypic alleles (3):Targeted, knock-out(1) Targeted, other(2) MGI:1859384
Xenopus448666, 379417, 398969944777
Zebrafish
Gene Ontology
Molecular Functioncalcium ion binding, glutathione transferase activity, magnesium ion binding, more...prostaglandin-D synthase activity, protein homodimerization activity
Biological Processprostaglandin biosynthetic process, prostaglandin metabolic process
Cellular Componentcytoplasm, nucleus
Links to other databases
Entrez Gene395863
Ensembl GeneENSGALG00000010402
KEGGgga:395863

Entry 1

GEISHA IdHPGDS.Anderson.2021Data SourceDirect Submission
Complete cDNA Template Probeshow
AGGGATCACACACCGCTGCACCCAAGGACCCATCATGCCCAACTACAAGCTGACGTACTTCAATCTGCGAGGAAGAGCA
GAAATCTGCCGCTACCTGTTTGCCTATGCAGGCATAAAGTATGAAGACCACAGGTTGGAAGGAGCAGACTGGCCCAAAA
TTAAACCAACTATCCCATTTGGCAAAGTTCCTATTCTGGAAGTAGATGGAGTGATCATTCACCAGAGCCTAGCAATTGC
GAGATACCTCGCCAGAGAATCAGGTCTGGCAGGTCAGACTCCAGTGGAGCAGGCATTGGCTGATGCCATTGTGGACACC
ATTGATGATTTCATGATGCTGTTCCCCTGGGCAGAGAAAAATCAGGATGTGAAGGAGAAAGCTTTTAATGACATCCTCA
CCAACAAGGCCCCCGAGCTGCTAAAAGATTTGGATACTTTCTTAGGGGACAAGAAGTGGTTTGTAGGGAAATCTGTAAC
ATGGGCTGATTTCTACTGGGATGTGTGCAGCACAACGCTCCTGTCCTACAAAGCTGACCTGGCAGACAAGTACCCCAGG
CTGTTGGCTCTCAGGGACAGAGTGGAAGCACTGCCCGCTATTGCAGCCTGGATCCAGAAAAGACCAAAGACAGCAATTT
AGACTGGCTGTTCAGTGGAAAAACAAATGCATGTTTTTTGGTTTTCAGACATTACAAGTGTGCTAAGTTATTAATTTTA
GAATCATTTAAATTAATTTCAGGTGGATATGAAGTACCAAATCAGAATCTAGTAGAGTAGAGCCTGGGTAGAGGTGCCA
TTCCAACTGCATTCCCTTCATCGCTAATAAAGTGTTTGGAAAA
CommentsImages and probe sequence provided by Claire Anderson. The probe was synthesized from cDNA clone ChEST153g19. Related paper: Anderson C, Hill B, Lu HC, Moverley A, Yang Y, Oliveira NMM, Baldock RA, Stern CD. A 3D molecular atlas of the chick embryonic heart. Dev Biol. 2019 Dec 1;456(1):40-46. doi: 10.1016/j.ydbio.2019.07.003. Epub 2019 Jul 5.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 12
stage 12
stage 12
Anterior Intestinal Portal
Blood Islands
Extraembryonic
Head Mesenchyme
Hindbrain
Intermediate Mesoderm
Lateral Plate Mesoderm
Neural Plate/Tube
Notochord
Outflow Tract
Pharynx
Somites
section 13
section 15

Entry 2

GEISHA IdHPGDS.Anderson.2019Data SourcePublication
Complete cDNA Template Probeshow
GTGAAGGGATCACACACCGCTGCACCCAAGGACCCATCATGCCCAACTACAAGCTGACGTACTTCAATCTGCGAGGAAG
AGCAGAAATCTGCCGCTACCTGTTTGCCTATGCAGGCATAAAGTATGAAGACCACAGGTTGGAAGGAGCAGACTGGCCC
AAAATTAAACCAACTATCCCATTTGGCAAAGTTCCTATTCTGGAAGTAGATGGAGTGATCATTCACCAGAGCCTAGCAA
TTGCGAGATACCTCGCCAGAGAATCAGGTCTGGCAGGTCAGACTCCAGTGGAGCAGGCATTGGCTGATGCCATTGTGGA
CACCATTGATGATTTCATGATGCTGTTCCCCTGGGCAGAGAAAAATCAGGATGTGAAGGAGAAAGCTTTTAATGACATC
CTCACCAACAAGGCCCCCGAGCTGCTAAAAGATTTGGATACTTTCTTAGGGGACAAGAAGTGGTTTGTAGGGAAATCTG
TAACATGGGCTGATTTCTACTGGGATGTGTGCAGCACAACGCTCCTGTCCTACAAAGCTGACCTGGCAGACAAGTACCC
CAGGCTGTTGGCTCTCAGGGACAGAGTGGAAGCACTGCCCGCTATTGCAGCCTGGATCCAGAAAAGACCAAAGACAGCA
ATTTAGACTGGCTGTTCAGTGGAAAAACAAATGCATGTTTTTTGGTTTTCAGACATTACAAGTGTGCTAAGTTATTAAT
TTTAGAATCATTTAAATTAATTTCAGGTGGATATGAAGTACCAAATCAGAATCTAGTAGAGTAGAGCCTGGGTAGAGGT
GCCATTCCAACTGCATTCCCTTTCATCGCTAATAAAGTGTTTGGAAAAACGAAAA
CitationAnderson C, Hill B, Lu HC, Moverley A, Yang Y, Oliveira NMM, Baldock RA, Stern CD. A 3D molecular atlas of the chick embryonic heart. Dev Biol. 2019 Dec 1;456(1):40-46. doi: 10.1016/j.ydbio.2019.07.003. Epub 2019 Jul 5.
CopyrightCopyright © 2019 Elsevier Inc. All rights reserved.
CommentsThe complete cDNA template sequence was obtained from the information from the publication as described in Anderson et al. 2019.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 12
stage 12
Outflow Tract
 
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.3137

Mouse

EmageMGI:1859384
EurexpressMGI:1859384
MGI GXDMGI:1859384

Frog

Xenbase944777

Fruit Fly

BDGPFBgn0010226

Zebra Finch

ZEBrA

Zebrafish

ZFIN
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