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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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KRT19
keratin 19

Gene

Official Symbol	KRT19
Official Full Name	keratin 19
CGNC ID	49516
also known as	GK-19, KRT24, keratin-19, keratin, type I cytoskeletal 19\|CK-19\|K19\|cytokeratin-19\|keratin 24, Keratin, type I cytoskeletal 19 , Cytokeratin-19, CK-19, Keratin-19 (K19)
gene type	protein-coding

Genomic Map

	Ensembl
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_205009
Polypeptide	NP_990340
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.2612

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly
Human
Mouse	16669	ENSMUSG00000020911	All phenotypic alleles (5):Targeted, knock-out(1) Targeted, other(4)	MGI:96693
Xenopus	394514, 432054			490359
Zebrafish

Gene Ontology

Molecular Function	structural molecule activity
Biological Process
Cellular Component	intermediate filament

Links to other databases

Entrez Gene	395861
Ensembl Gene	ENSGALG00000019719
KEGG	gga:395861

Entry 1

GEISHA Id	KRT19.UApcr	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	GGGAATGAAAAGACAACGATGC
Reverse cDNA Template Primer	ATTAACCCTCACTAAAGGTCAATGCCTGGAGCAGAGTCC	cDNA Template Length	500
Forward cDNA Template Probe	show `AATTCAACTGGACTGGCGGCTACCTGGTCCTCCCAGGGCACTCATTTCCTCCTCGGTGGGTTCTTCTTCAGGGTAGGCC AGCTCCTCCTTCAGGGTTCTCAATCTGCAGCTCCAGGTCGGTCCTCGCCAGCGTCAGCTCGTCCAGCACCCTGCGCAGC CCGTTGATGTCGGCCTCCACGCTCATGCGAAGAGCTTGCTCTGTTTCAAACTTGGTCTTGAAGTCGTCAGCGGCCAGTC TGGCATTGTCAATCTGCAGGACAACCTTCGAGTTGTCGATAGTGGCAGCAAGGATCTGGTCTCGGAGGTCTTCAATAGC CTTGTAATAAGGGCTGTAGTCTCGGGCAGGGCCTGGTCCTTGTTTTAGGTACCACTCACGGATTTTAGTTTCAAGATCT GAGTTTGCTTCTTCCAATGCACGCACTTTGTCCAGGTAGGACGCGAGGCGGTCATTCAGGTTTTGCATCGTTGTCTTTT TCATTCCCA`

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

stage 5

Area Opaca
Early Endoderm
Epiblast
Headfold

7-12

stage 7

stage 8

stage 9

stage 10

stage 11

Anterior Intestinal Portal
Area Opaca
Blood Islands
Ectoderm
Extraembryonic
Headfold
extraembryonic ectoderm
extraembryonic endoderm
extraembryonic mesoderm

13-18

stage 13

stage 18

Amnion
Ear/Otic Placode
Ectoderm
Foregut
Hindbrain
Notochord
Pharyngeal Arches and Clefts
Spinal Cord
extraembryonic ectoderm
extraembryonic endoderm
extraembryonic mesoderm

19-24

stage 19

stage 22

stage 24

Allantois
Amnion
Ear/Otic Placode
Ectoderm
Foregut
Hindbrain
Liver
Lung
Nasal Placode/Nerve
Notochord
Oral Pharynx
Pharyngeal Arches and Clefts
Pharynx
Somatic Mesoderm
Spinal Cord
Spinal Ganglia and Nerves
Wing Ectoderm

25-26

stage 26

Allantois
Ectoderm
Epicardium
Foregut
Heart
Leg
Lung
Oral Pharynx
Pharyngeal Arches and Clefts
Somatic Mesoderm
Spinal Ganglia and Nerves
Wing
Yolk Sack or Stalk

Entry 2

GEISHA Id	CK19.Yanai.2005	Data Source	Publication
Complete cDNA Template Probe	show TCACAGGCATAAAAGAGCTGAGGTGGGGGAAAGGAACTCGCATTCCTGCCTCAGGATCACAAACTACAGCGCGCTTCAG GTCCTCGGCATTCCCCTCCATGGCGACTTATAGCTTCAGGCAAACCACCTCCTCCGTGGCAGGGGGACCCTGCGGCCGC TCGCTCCGTTTGGGTGGCGGCTCCTTCAGGGCTCCGAGCATCCATGGGGGATCCGGTGGCAGGGGAGTGTCAGTCTCTT CCGCCAGATTTGTCTCTTCTGGCCTAGGAAGCGGCCTGGGAGGCGGATATGGAGGTGCCTTCAGCAGCAGCTTTAGTGC AGGCTTCGGTGGTGGCTATGGCGGGGGCTTGGGCTCTGGTGACGGTCTCCTCTCAGGGAATGAAAAGACAACGATGCAA AACCTGAATGACCGCCTCGCGTCCTACCTGGACAAAGTGCGTGCGTTGGAAGAAGCAAACTCAGATCTTGAAACTAAAA TCCGGGAGTGGTACCTAAAACAAGGACCAGGCCCTGCCCGAGACTACAGCCCTTATTACAAGGCTATTGAAGACCTCCG AGACCAGATCCTTGCTGCCACTATCGACAACTCGAAGGTTGTCCTGCAGATTGACAATGCCAGACTGGCCGCTGACGAC TTCAAGACCAAGTTTGAAACAGAGCAAGCTCTTCGCATGAGCGTGGAGGCCGACATCAACGGGCTGCGCAGGGTGCTGG ACGAGCTGACGCTGGCGAGGACCGACCTGGAGCTGCAGATTGAGAACCTGAAGGAGGAGCTGGCCTACCTGAAGAAGAA CCACGAGGAGGAAATGAGTGCCCTGGGAGGACAGGTAGCCGGCCAAGTCAGTGTGGAAGTGGACTCTGCTCCAGGCATT GACCTGTCCAAGATCCTGGCCGATATGAGAGACCAGTATGAACACATGGCGGAGAAGAACAGGAAGGATGCTGAGGCCT GGTTCCACAGTAAGACTGAGGAGCTGAACCGTGAGGTAGCCGTCAATACCGAACAGCTACAGAGCAGCAAGTCTGAAGT CACTGACCTGAGACGCACCCTCCAAGGGCTGGAGATAGAGCTGCAGTCCCAGCTCAGCATGAAAGGCGCGCTGGAGAGC ACCCTGGCAGACACCGAAGGGCGTTACGGCGCACAGCTGGCGCAGATCCAGGACATGATTGGCAGCATTGAGGCGCAGC TGGCTGAGCTCCGCGCTGATATGGAGCGCCAGAACAGCGAATACAAGATGCTCATGGATATCAAGACCCGTCTGGAGCA GGAGATCGCTACTTACCGGCAGCTCCTGGAGGGTCAGGAGTCCCAGTTGTTTGGATCCCTTTCTGGATCTCCCGACAAA AGAGACAAGCCGGCAGATGGAAAATAATACTGAAAGTCCCATAACTGTCATCTTCAAGATGAGGGAAAAAAAGGAATTA AAATGCAGAGGAATCACACTAAACTGCTGGAAATTGAGTGCACAGAGAATCCTTGACTACACAGAGTTTAAGTAGATTG GTTCATTTAGCAGCGATTAATTTGCAGACTAGGTTAGGCTTTTAATTACTTCCAGTTCTTTCTTGTACTGAAATGCTGT ATCTATTCCAATAAAGATGATCTTGC
Citation	Yanai M, Tatsumi N, Endo F, Yokouchi Y. Analysis of gene expression patterns in the developing chick liver. Dev Dyn. 2005 Jul;233(3):1116-22.
Copyright	Wiley-Liss, Inc. 2005
Comments	Insufficient information provided to verify exact probe sequence. Sequence shown is entire coding region from ENSEMBL ENSGALT00000006103

Stage

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Location (click to highlight)

Comments (click to highlight)

25-30

stage 25

Gut
Splanchnic Mesoderm

31-42

stage 36

stage 39

stage 42

Gut
Liver
Veins

extrahepatic bile duct
intrahepatic bile duct
portal vein

Entry 3

GEISHA Id	Keratin.McLarren.2003	Data Source	Publication
Complete cDNA Template Probe	show AATTCGCGGCCGATCACAGGCATAAAAGAGCTGAGGTGGGGGAAAGGAACTCGCATTCCTGCCTCAGGATCACAAACTA CAGCGCGCTTCAGGTCCTCGGCATTCCCCTCCATGGCGACTTACAGCTTCAGGCAAACCACCTCCTCCGTGGCAGGGGG ACCCTGCGGCCGCTCGCTCCGTTTGGGTGGCGGCTCCTTCAGGGCTCCGAGCATCCATGGGGGATCCGGTGGCAGGGGA GTGTCAGTCTCTTCCGCCAGATTTGTCTCTTCTGGCCTAGGAAGCGGCCTGGGAGGCGGATATGGAGGTGCCTTCAGCA GCAGCTTTAGTGCAGGCTTCGGTGGTGGCTATGGCGGGGGCTTGGGCTCTGGTGACGGTCTCCTCTCAGGGAATGAAAA GACAACGATGCAAAACCTGAATGACCGCCTCGCGTCCTACCTGGACAAAGTGCGTGCGTTGGAAGAAGCAAACTCAGAT CTTGAAACTAAAATCCGGGAGTGGTACCTAAAACAAGGACCAGGCCCTGCCCGAGACTACAGCCCTTATTACAAGGCTA TTGAAGACCTCCGAGACCAGATCCTTGCTGCCACTATCGACAACTCGAAGGTTGTCCTGCAGATTGACAATGCCAGACT GGCCGCTGACGACTTCAAGACCAAGTTTGAAACAGAGCAAGCTCTTCGCATGAGCGTGGAGGCCGACATCAACGGCCTG CGCAGGGTGCTGGACGAACTGACGCTGGCGAGGACCGACCTGGAGCTGCAGATTGAGAACCTGAAGGAGGAGCTGGCCT ACCTGAAGAAGAACCACGAGGAGGAAATGAGTGCCCTGGGAGGACAGGTAGCCAGCCAAGTCAGTGTGGAAGTGGACTC TGCTCCAGGCATTGACCTGTCCAAGATCCTGGCCGATATGAGAGACCAGTATGAACACATGGCGGAGAAGAACAGGAAG GATGCTGAGGCCTGGTTCCACAGTAAGACTGAGGAGCTGAACCGTGAGTTAGCCGTCAATACCGAACAGCTACAGAGCA GCAAGTCTGAAGTCACTGACCTGAGACGCACCCTCCAAGGGCTGGAGATAGAGCTGCAGTCCCAGCTCAGCATGAAAGG CGCGCTGGAGAGCACCCTGGCAGACACCGAAGGGCGTTACGGCGCACAACTGGCGCAGATCCAGGACATGATTGGCAGC ATTGAGGCGCAGCTGGCTGAGCTCCGCGCTGATATGGAGCGCCAGAACAGCGAATACAAGATGCTCATGGATATCAAGA CCCGTCTGGAGCAGGAGATCGCTACTTACCGGCAGCTCCTGGAGGGTCAGGAGTCCCAGTTGTTTGGATCCCTTTCTGG ATCTCCCGACAAAAGAGACAAGCCGGCAGATGGAAAATAATACTGAAAGTCCCATAACTGTCATCTTCAAGATGAGGGA AAAAAAGGAATTAAAATGCAGAGGAATCACACTAAACTGCTGGAAATTGAGTGCACAGAGAATCCTTGACTACACAGAG TTTAAGTAGATTGGTTCATTTAGCAGCGATTAATTTGCAGACTAGGTTAGGCTTTTAATTACTTCCAGTTCTTTCTTGT ACTGAAATGCTGTATCTATTCCAATAAAGATGATCTTGCAAAAAAAAA
Citation	McLarren KW, Litsiou A, Streit A. DLX5 positions the neural crest and preplacode region at the border of the neural plate. Dev Biol. 2003 Jul 1;259(1):34-47.
Copyright	Copyright © 2003 Elsevier Science (USA). All rights reserved.
Comments	Insufficient information provided in publication to verify exact sequence used to synthesize probe. Sequence below was obtained from NCBI (NM_205009).