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A chicken embryo gene expression database

	Anatomical Location
	Stage
	Gene Name
	GEISHA ID
	Multiple Parameters

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CACNA1D
calcium voltage-gated channel subunit alpha1 D

Gene

Official Symbol	CACNA1D
Official Full Name	calcium voltage-gated channel subunit alpha1 D
CGNC ID	49537
also known as	voltage-dependent L-type calcium channel subunit alpha-1D\|CHCACHA1D\|L-type voltage-gated calcium channel alpha1D subunit ChCaChA1D\|calcium channel, voltage-dependent, L type, alpha 1D subunit\|voltage-gated calcium channel subunit alpha Cav1.3
gene type	protein-coding

Genomic Map

	Ensembl ID not known
	NCBI
	UCSC
	Gallus-Browse

Sequence Information

Genomic
RNA	NM_205034
Polypeptide	NP_990365
Sequence Clusters/ESTs	Unigene

Gene Expression

In Situ Hybridization	GEISHA
EST Profile	Gga.52031

Orthology

	Entrez Gene	Ensembl Gene	Genetic Phenotypes	MOD
Fruit Fly	34950			FBgn0001991
Human	776	ENSG00000157388		MIM:114206
Mouse	12289	ENSMUSG00000015968	All phenotypic alleles (5):Targeted, knock-out(2) Targeted, other(2) Gene trapped(1)	MGI:88293
Xenopus	780391, 100462912			876947
Zebrafish	403310, 403311	ENSDARG00000024004	ZDB-GENE-030616-135, ZDB-GENE-040525-3	ZFIN:ZDB-GENE-030616-135, ZFIN:ZDB-GENE-040525-3

Gene Ontology

Molecular Function	metal ion binding, voltage-gated calcium channel activity
Biological Process
Cellular Component	voltage-gated calcium channel complex

Links to other databases

Entrez Gene	395895
Ensembl Gene
KEGG	gga:395895

Entry 1

GEISHA Id	CACNA1D	Data Source	GEISHA ISH Analysis
Forward cDNA Template Primer	CTCTGTCCCAAAGAAAACGCC
Reverse cDNA Template Primer	AATTAACCCTCACTAAAGGATTCGGTCCAACCCAACCAC	cDNA Template Length	788
Complete cDNA Template Probe	show CTCTGTCCCAAAGAAAACGCCAGCAATATGCCAAGAGCAAAAAACAGGGTAATACGTCTAATAGTCGGCCACCCCGTGC CCTTTTCTGTTTATCCCTCAACAACCCAATACGAAGAGCCTGCATTAGTCTAGTAGAATGGAAACCATTTGACATATTT ATACTACTGTCTATTTTTGCCAATTGTGTGGCCTTAGCTGTTTACATCCCATTCCCAGAAGATGATTCTAATTCAACTA ATCATAACTTGGAAAAAGTAGAATATGCCTTCCTGATAATTTTTACAGTTGAAACATTTTTGAAGATTATAGCATATGG ATTATTATTACACCCCAATGCGTATGTTAGAAATGGATGGAATTTATTGGATTTTGTAATAGTAGTAGTAGGATTATTT AGTGTAATATTGGAACAATTAACCAAAGAAACAGAAGGTGGCAGCCACTCAGGTGGCAAACCTGGAGGCTTTGATGTCA AAGCCCTAAGAGCCTTTCGTGTATTGCGACCTCTCCGGCTTGTATCAGGAGTGCCCAGTTTACAAGTTGTCCTGAACTC CATTATAAAAGCCATGGTTCCCCTGCTCCATATTGCCCTTTTGGTATTGTTTGTAATCATAATCTATGCTATTATAGGA TTGGAACTTTTTATTGGAAAAATGCACAAATCTTGTTTTCTTATTGATTCAGATATACTAGTTGAAGAAGATCCAGCAC CTTGTGCATTCTCAGGGAATGGACGTCAGTGTGTCATGAATGGCACTGAATGTAAGGGTGGTTGGGTTGGACCGAAT

Stage

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Location (click to highlight)

Comments (click to highlight)

4-6

stage 4

Unlabeled

7-12

stage 7

stage 8

stage 10

stage 11

Area Pellucida
Atria
Endoderm
Neural Plate/Tube
Notochord
Sinus Venosus
Splanchnic Mesoderm
extraembryonic endoderm
extraembryonic mesoderm

19-24

stage 19

stage 23

Foregut
Head Mesenchyme
Heart
Neural Plate/Tube
Sclerotome
Sinus Venosus
Unlabeled
Ventricles

25-26

stage 26

Foregut
Sclerotome
Spinal Cord

Entry 2

GEISHA Id	CACNAID.Anderson.2020	Data Source	GEISHA ISH Analysis
Complete cDNA Template Probe	show CAGTTGGTAGAAGCGGTACTTATATCTGAAGGCCTAGGAAGGTATGCAAAGGACCCTAAATGGTTTCAGCTACAAAACA TGAGATTGCTGATGCTGTGACATGACTATCGATGAGATGGAAAGTGCAGCAAGTAATCTTCTCAATGGAAATATTAGCA ATGGGACCAATGGGGATATGTTTCCCATTTTAAGCAGACAAGATTATGAACTTCAAGATTTCGGTCCTGGCTACAGTGA TGAAGAACCAGAACCAGGACGATATGAAGAAGACTTAGCTGATGAAATGATATGCATTACAAGCTTATAGTATTTAGCA AGGGAAAAGATTTTAAATAACAGAAAAAGTGCCTCATAGTTTAAAGATGCTAGGCACTAGTTGGGGTTAACCGATCAAG TTTGTACAAGTGATGTCACACCTCAAGGAAGCCATAACTAATAAACAGATTATCTCCACGTTGCTGAAATGTGATCAGA GCTGCAGCACATCATCTCTTCCCACAGAATCTTCAGNTTTCTCTGTAGGAATAAGGTTATTTCGAAAAGAAGCAGGTTC TGACAATCAGTTTTTTGAGGGCTAGAGTGGGATTCTGAGGTGTAATATCTTGCCTGTTCTTCAACCTTGTGCTACTGTC CTTCATAGTAGAGCAGGATTTGTCAGTGAAAATGTGTAAGTCCAGCACAACACGAGGTGAGTGATGACAACCAGTAACG TCATTACCTCAGTACTCAAGAGCATATCAGCTATCCATATGCATAATCTATTCTAATACTGTTTTCCACACCTGGCTCC CGATTTCTTTTCTTAATGGCTCTTCTAAAACATGGTTGTCATGCTCTACCTGTTAGAGATCTTGGCAACAGAGTTTTTC AGAATATCGGATATG
Comments	Images and probe sequence provided by Claire Anderson.