GEISHA - A Chicken Embryo Gene Expression Database
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CACNA1D
calcium voltage-gated channel subunit alpha1 D

Gene
Official SymbolCACNA1D
Official Full Namecalcium voltage-gated channel subunit alpha1 D
CGNC ID49537
also known asvoltage-dependent L-type calcium channel subunit alpha-1D|CHCACHA1D|L-type voltage-gated calcium channel alpha1D subunit ChCaChA1D|calcium channel, voltage-dependent, L type, alpha 1D subunit|voltage-gated calcium channel subunit alpha Cav1.3
gene typeprotein-coding
Genomic Map
 Ensembl ID not known
NCBI
UCSC
Gallus-Browse
Sequence Information
Genomic
RNANM_205034
PolypeptideNP_990365
Sequence Clusters/ESTsUnigene
Gene Expression
In Situ HybridizationGEISHA
EST ProfileGga.52031
Orthology
Entrez GeneEnsembl GeneGenetic PhenotypesMOD
Fruit Fly34950FBgn0001991
Human776ENSG00000157388MIM:114206
Mouse12289ENSMUSG00000015968All phenotypic alleles (5):Targeted, knock-out(2) Targeted, other(2) Gene trapped(1) MGI:88293
Xenopus780391, 100462912876947
Zebrafish403310, 403311ENSDARG00000024004ZDB-GENE-030616-135, ZDB-GENE-040525-3ZFIN:ZDB-GENE-030616-135, ZFIN:ZDB-GENE-040525-3
Gene Ontology
Molecular Functionmetal ion binding, voltage-gated calcium channel activity
Biological Process
Cellular Componentvoltage-gated calcium channel complex
Links to other databases
Entrez Gene395895
Ensembl Gene
KEGGgga:395895

Entry 1

GEISHA IdCACNA1DData SourceGEISHA ISH Analysis
Forward cDNA Template PrimerCTCTGTCCCAAAGAAAACGCC
Reverse cDNA Template PrimerAATTAACCCTCACTAAAGGATTCGGTCCAACCCAACCACcDNA Template Length788
Complete cDNA Template Probeshow
CTCTGTCCCAAAGAAAACGCCAGCAATATGCCAAGAGCAAAAAACAGGGTAATACGTCTAATAGTCGGCCACCCCGTGC
CCTTTTCTGTTTATCCCTCAACAACCCAATACGAAGAGCCTGCATTAGTCTAGTAGAATGGAAACCATTTGACATATTT
ATACTACTGTCTATTTTTGCCAATTGTGTGGCCTTAGCTGTTTACATCCCATTCCCAGAAGATGATTCTAATTCAACTA
ATCATAACTTGGAAAAAGTAGAATATGCCTTCCTGATAATTTTTACAGTTGAAACATTTTTGAAGATTATAGCATATGG
ATTATTATTACACCCCAATGCGTATGTTAGAAATGGATGGAATTTATTGGATTTTGTAATAGTAGTAGTAGGATTATTT
AGTGTAATATTGGAACAATTAACCAAAGAAACAGAAGGTGGCAGCCACTCAGGTGGCAAACCTGGAGGCTTTGATGTCA
AAGCCCTAAGAGCCTTTCGTGTATTGCGACCTCTCCGGCTTGTATCAGGAGTGCCCAGTTTACAAGTTGTCCTGAACTC
CATTATAAAAGCCATGGTTCCCCTGCTCCATATTGCCCTTTTGGTATTGTTTGTAATCATAATCTATGCTATTATAGGA
TTGGAACTTTTTATTGGAAAAATGCACAAATCTTGTTTTCTTATTGATTCAGATATACTAGTTGAAGAAGATCCAGCAC
CTTGTGCATTCTCAGGGAATGGACGTCAGTGTGTCATGAATGGCACTGAATGTAAGGGTGGTTGGGTTGGACCGAAT
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
4-6
stage 4
Unlabeled
 
7-12
stage 7
stage 8
stage 10
stage 11
stage 11
Area Pellucida
Atria
Endoderm
Neural Plate/Tube
Notochord
Sinus Venosus
Splanchnic Mesoderm
extraembryonic endoderm
extraembryonic mesoderm
 
19-24
stage 19
stage 19
stage 23
stage 23
Foregut
Head Mesenchyme
Heart
Neural Plate/Tube
Sclerotome
Sinus Venosus
Unlabeled
Ventricles
 
25-26
stage 26
stage 26
Foregut
Sclerotome
Spinal Cord
 

Entry 2

GEISHA IdCACNAID.Anderson.2020Data SourceGEISHA ISH Analysis
Complete cDNA Template Probeshow
CAGTTGGTAGAAGCGGTACTTATATCTGAAGGCCTAGGAAGGTATGCAAAGGACCCTAAATGGTTTCAGCTACAAAACA
TGAGATTGCTGATGCTGTGACATGACTATCGATGAGATGGAAAGTGCAGCAAGTAATCTTCTCAATGGAAATATTAGCA
ATGGGACCAATGGGGATATGTTTCCCATTTTAAGCAGACAAGATTATGAACTTCAAGATTTCGGTCCTGGCTACAGTGA
TGAAGAACCAGAACCAGGACGATATGAAGAAGACTTAGCTGATGAAATGATATGCATTACAAGCTTATAGTATTTAGCA
AGGGAAAAGATTTTAAATAACAGAAAAAGTGCCTCATAGTTTAAAGATGCTAGGCACTAGTTGGGGTTAACCGATCAAG
TTTGTACAAGTGATGTCACACCTCAAGGAAGCCATAACTAATAAACAGATTATCTCCACGTTGCTGAAATGTGATCAGA
GCTGCAGCACATCATCTCTTCCCACAGAATCTTCAGNTTTCTCTGTAGGAATAAGGTTATTTCGAAAAGAAGCAGGTTC
TGACAATCAGTTTTTTGAGGGCTAGAGTGGGATTCTGAGGTGTAATATCTTGCCTGTTCTTCAACCTTGTGCTACTGTC
CTTCATAGTAGAGCAGGATTTGTCAGTGAAAATGTGTAAGTCCAGCACAACACGAGGTGAGTGATGACAACCAGTAACG
TCATTACCTCAGTACTCAAGAGCATATCAGCTATCCATATGCATAATCTATTCTAATACTGTTTTCCACACCTGGCTCC
CGATTTCTTTTCTTAATGGCTCTTCTAAAACATGGTTGTCATGCTCTACCTGTTAGAGATCTTGGCAACAGAGTTTTTC
AGAATATCGGATATG
CommentsImages and probe sequence provided by Claire Anderson.
StageImage (click image to view full size)Location (click to highlight)Comments (click to highlight)
7-12
stage 12
stage 12
stage 12
Widespread Expression
section 1
stage 12+, dorsal
 Data from NCBI Unigene EST Profile
Unigene ID: Gga.52031

Mouse

EmageMGI:88293
EurexpressMGI:88293
MGI GXDMGI:88293

Frog

Xenbase876947

Fruit Fly

BDGPFBgn0001991

Zebra Finch

ZEBrA

Zebrafish

ZFINZDB-GENE-030616-135, ZDB-GENE-040525-3
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